CmaCh16G003040 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G003040
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTubulin alpha chain
LocationCma_Chr16: 1415689 .. 1420644 (+)
RNA-Seq ExpressionCmaCh16G003040
SyntenyCmaCh16G003040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTCTGCAAATTCTTAAATCAACCGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACTCGGAGGTTTGTACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTAGAAGGTTGAGTTTCCGTTGTGCTGCTCAGGATTCTGATAAGGAAAGCAACGGCAAGTTTTGACCGCTCTTCTTCTTCTTCTTCTTCTTTTGTTTCTGCTTCTGCTTTTTGGTGTCTTCTTTTTCTCATTTGTTTTTCTTTCTCAGCGCATTTTCTTGATGATTTGTTGTTCGTTGTTGTAGACCTCGTCTTGTAATATTGAAAGCGAGAGATAGAGAGGCAACTAGTTAACTGGCTTAGATGAGGCAATAGTTACTGATGTGGTTTTATTCCGATAGTCTGTCATTCTTAGTCCTAAACTATCTCTCTTTGTAGACAATCGTGTGAGAATCCATCCGGCTATTCGCCCGTCATTCCTGGTTTATCTCTCTCAATGTGTTTGCCTCGCTCGGATTTCTTCATGAATTCATGTTCGTCATCATTGACTTAAACGAGATAGAGAGACAGTATGCAGCCTAATCCTTCGATGATGCCGAAGTTGCATGGTGTAGTTTGCAGCTCAGTTGGTCCGTCGCTTCTGAATTATCTTCTTCTGTTGACAGTAGCTCAATCACGTCGCAAAATCGTGAGAGATGAGATTCATCCAGCTATTCGTTCCTCATTCCTTAATTCTCTTACTCAGTGCATTTGCCTTGTTCGGATGTCTTGATGAAATGATGTTCGTGTTTGTTAGTTATTTTCATAGCGAGAAATAGAGACGCAAATTCACCGAGAGAGATAATTCGGGAATGATGAACGAATATTTGGATGAAACTCGCATGATTTTACTCGTTGATTGTGCTGCAGTCAACAGAGTAAGATAGTAGATGTTCACTATCGTAGACATCTTCTTGCTTAAAAGAGGCAGAAGTTGTATGTTGTAGTTTGTTGTTGAGATGGTCCGTCATTCCTCGGTTATCTTACTCTGTAGAAAATCATGTAGCAAAATCGTGCAGTATCCATCAAGCTATTTGAGTAAATAAGGGATGGAAAATGCTTGCGGCTGCAAATGAAGATCACTTAGTTGGCCGTCCAATTCTTTTTAGAGCTCTATTCTTGAGTCAATATAGGCATATCCACGAAGATGAAATTAAATAGGAATTTGAAAATTTGTATTGGTCCAATTTTTATAGTCGAAGCTTTGAAGAAGCTACAAGTCTGTGTCAAGCCAACAGGAGTATTGGCTGGCCATGCTTGTTTAGATTGTTTGAACAGCTTTTGCATAGGGCCGATTTCTCCTTTAAGAAGAGTTTCGGATGTTTGAGTTTTCTTCAGCTTGTGTAACAATGGCGTGGTTAGCTTTGGCCCTCCAATATGAAGGCCCAGAACGCCTTCAAGCTTATTTTCCTAGCCAGTCGCTTTTGTATGCACCATCTTCCTACTACGTTCACATCTGGCCTTTCCTTTCTTGGTCCATTATAGAAGAACTTTTACTTATTAGAGCAGAGCTTTTAGCGTTCATCTGATTAGATGTTCCAACCAAGTTTGTATCTGCGTCACAGTTATCTCTAATAGTAGGTCTTAGTGGTAGGAATTTTCACATTCCTCATTAGGAACCTTAGGATTCTCTTTTCTTAACTATTTTCGTATACTTTGTTATGTGAGCCATACGTTCACATGCATATATTTTCTATAAATCAAGTCTGCCACAAGTAGCTTACTAGAAGGCTGTAATTTTTAGTTAGGGACTGATTAATCACCCTGTTGTAGGTTATGGAAAATGATGTTAGTTTTGAAGGATTCTGTGTGTTTTCCAAGGTTAGAGAAAGTTGCTTTAACTACACCCAAGAGTTAGATGCCAGGTACGATAGAAATCTTTTGTCGATCTTATTTGTCATCAAGTTGACCCACTATACTGTGACCTTCGATTATGTCCGCTGCTTCCCATCCTTCGTAGTCTGGATCAGTCTAACCATTATAATTAGTTTTCTCATTTAGTTTGAGAATAGTTGCAACACCTTCAGAAACCATCACTGACGTGTGTGTATGTAGTATATTACTTGAGTTGAACGTATTCAAGAATGTTTTTGTGTTTGATACCTTCGATTATGTTGATTTAAGTTACTTTACATTACTTTCTTCAGGTGAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTCGAGGATACTAGCAACACTGACTTTGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCTCGCAGAAGTGCTGTTTCAACTGAAGTTGACAAAAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGTTAATTTCCTTATGATTTTATTGGAGTATATTGAATATGCTATTCGAATATTTAAATTCATATTATCTTTTCGTTACCATTTTCTATTGTTCCCATGCTTGACGAGTTATGACCAACATAACCAGAATTTGGTGAGCAGTCGAGGAAAATATTATTACTATCCCACCAAGAATATCGAAAGACTAGCCAGCCATACAAAACCGACGTCCAAATAAGGGATCTGTAAGAAAAAATTACAAAAATTAGCTCCAAACATTGAGAACCATCCAAAACAAATGGACGACCAAAACTTTTCTGAAGCAAAAGCCTAAAGGGAAGCATTACAGCGGGCCAAGCTTTAAAAATCCTCCCATGACCTCTCTGTCCTAGAAGTCCTCGTGCTTTCTACTAAATTCTCCAAATAACAACATAATCTGCCGGCGGAAAAATGTAGATTGTAAAAATGAAGCCACTCCCAAATGAAAGATTAGACAATATTTAGCATGGGTACAATAGATTTCCAGTGCTTCCTATATGTAGATTGTATTTTCTGATATCGATCTTGTACTGCAACATATCAGGCTATGGTTAATAGAGCAATAGTTGTGAAAGCTAGATTTTCAATGCCCAAACCACCCTCTTTTAGAACAACTCAACAAGATAAGGACCTTCCCCACACCCCCGCGAAAAAAGAAATGAAGTCATTGAGTTTAATGACCAGTGGTTCAAGCTTTGAAGATTTCAGTTAAGAGGAATCCCACTCAAAACCAACTAGATCAGAGTAAGTCTGCCACCCTCGGAGAGAACTTCTTCCATAATAACAGGTGGTTTTCCTCTTTGTAATATCTCTTCTAGCCCCAAATTTTAGCCTCGAGTATACAATCAATTAGGGTAGAGATATTAACTGAATGCATTCAACTATTTATGAAGGCTTAACATAGAACACGCTGAACCAACCTCTTCCATTAGACCGTTGATATAGTACCAAAATAAGGGAAGAAGAGTCTTCTCTTCCTGAAAAAGGCACCCTTCACCAACCTTCGCCAAAATGTGGAAGGCAATCTATCAACCAGGTAACAATTCCCAACTCCCAGAGTAAATCAGCAGCACCAAACTTTCCTTTCTCAAACACAAACTTTCCTTCATCCGTGATTCTCAATTAGAAAGACTTGCTTTCTATTGTAAAGCACCATCAAACATGAAGACAAATCAAAGAAGAAAGTACCAGATCCCTTTTCCAGATCCTAATTAGCAATTCGGTCATTCAACAATCTCCCGTTTTTTCTGTACTTATAGCAGGTTAACAGCATCATGTGCCTGCTATTCTCTCATACATCATTTGTCTTAGTAATTCGTATATGAAGTGTACTAGTAATTCTTTTAAAAGTCTAACTTCGACAAGCCAAAGCTCATAATTGGAACCAATGATACTGTTAATCTTAGCCAGCAGCATCAGTTTTGGAGTGGTCAATCAGTAGAGAAACACCAATATATCTGAGCGTAAGGTTTAATATAGAAGTCTGCAGTATTTGAGTTCTACATGCACTGGAACTATATTCTATTTTTCCAAACAAAGTCCTGGGAAAACTGAAGTTTCTTTCTAATTTCGTGCTGGAAGGAACAGAATAAACTTTATCGTGCATTTATGTTTTCTGAGTGATCCATTAGTTGGATCTTAATATTAGGTTGATATTATTGGCATAGGATTGCCCTAGTTGTGTCTATTTTGTCTTCTAACTCTTTTAACATTTACAAATTTAGTTCCTGCACTTTAATAATTTTTTATAATCGACAAATCTACTAAATGCAAAATTAAACTAAATTAAACTGTTTAGGATTCCCATGAGATAAATACAGATTGATTATATTCCATTCCCTTTCATTTCTATCATTTCAACTGCATGTCAGCTTTAATTCATTTCATTTGGTTTTCAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTCTTTACTTTGTAAGGCTCCTTTCTCTTATATTTACTGCTCCAATTTCTGTTTGATATCCAAGTACTTAAGAGGAGGTCGAAACCAACATTTTTACTCTAATACTATTTTTATGCAGTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTTTAGAAGACGAAAGAATTTCACAAATGGCTCCTCGTGTAAATTGACGGACGCATAATCTCCTAATTGGTTGGTTTTCTACTACTTTGTTTTCCCTTCCCAATGTTAATTGATGTTCCTTACTATTATTATTAATATATCTAAATGATTATTAGCTAGAATTTTCTGGTTTAATTTACGTTTTCTAGACTCATTCTCCTGCTGCTTTTTCTTTTTGGGCTAGGATTTACACATTTTAAAATGATTATTAGCTAAAAAATTTCTTTTTTATTCTTTTTTTAGTTTTGTGTTGCAGTTTTAA

mRNA sequence

ATGGCTGTTCTGCAAATTCTTAAATCAACCGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACTCGGAGGTTTGTACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTGAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTCGAGGATACTAGCAACACTGACTTTGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCTCGCAGAAGTGCTGTTTCAACTGAAGTTGACAAAAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTCTTTACTTTTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTTTAGAAGACGAAAGAATTTCACAAATGGCTCCTCGTTTTTAA

Coding sequence (CDS)

ATGGCTGTTCTGCAAATTCTTAAATCAACCGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACTCGGAGGTTTGTACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTGAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTCGAGGATACTAGCAACACTGACTTTGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCTCGCAGAAGTGCTGTTTCAACTGAAGTTGACAAAAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTCTTTACTTTTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTTTAGAAGACGAAAGAATTTCACAAATGGCTCCTCGTTTTTAA

Protein sequence

MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVREEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRF
Homology
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BLAST of CmaCh16G003040 vs. ExPASy TrEMBL
Match: A0A6J1JBV1 (uncharacterized protein LOC111483048 OS=Cucurbita maxima OX=3661 GN=LOC111483048 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 6.5e-103
Identity = 202/220 (91.82%), Postives = 202/220 (91.82%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR------ 60
           MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR      
Sbjct: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVRRRLSFR 60

Query: 61  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS
Sbjct: 61  CAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL
Sbjct: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 203
           YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR
Sbjct: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 220

[Close]
BLAST of CmaCh16G003040 vs. ExPASy TrEMBL
Match: A0A6J1E457 (uncharacterized protein LOC111430640 OS=Cucurbita moschata OX=3662 GN=LOC111430640 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.2e-102
Identity = 200/220 (90.91%), Postives = 201/220 (91.36%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR------ 60
           MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRF LLHGRRRSLRYGCVR      
Sbjct: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFR 60

Query: 61  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS
Sbjct: 61  CAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL
Sbjct: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 203
           YFFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPR
Sbjct: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPR 220

[Close]
BLAST of CmaCh16G003040 vs. ExPASy TrEMBL
Match: A0A6J1D5D9 (uncharacterized protein LOC111017763 OS=Momordica charantia OX=3673 GN=LOC111017763 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.5e-86
Identity = 174/220 (79.09%), Postives = 185/220 (84.09%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCV------- 60
           MA LQ+LKS VSP SISQP FG +SSRF S+ DSTRRFV  HGRRRSLRYGCV       
Sbjct: 1   MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  -----------REEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRG+TPTSLLED+++ DFGLGGEM GE RDFS RS
Sbjct: 61  CAAQDADKESNGEEPPESLFMKELKKRGLTPTSLLEDSNSNDFGLGGEMTGEGRDFSSRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFAL
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 203
           YFF GPSFVH+G +TPISPPPYVDPYALLEDERISQ APR
Sbjct: 181 YFFFGPSFVHNG-ETPISPPPYVDPYALLEDERISQTAPR 219

[Close]
BLAST of CmaCh16G003040 vs. ExPASy TrEMBL
Match: A0A1S3BY38 (uncharacterized protein LOC103494832 OS=Cucumis melo OX=3656 GN=LOC103494832 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.9e-84
Identity = 173/219 (79.00%), Postives = 184/219 (84.02%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCV------- 60
           MA LQILKST+S PSIS P FGSQS+RFFS+ DS    +LLHGRRRSLR  CV       
Sbjct: 1   MASLQILKSTLSLPSISHPNFGSQSTRFFSDFDS----LLLHGRRRSLRVACVCRRFSFR 60

Query: 61  -----------REEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRS
Sbjct: 61  CAAKDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF L
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAP 202
           YFF G SF+HDG KTPISPPPYVDPYALLEDERISQ+AP
Sbjct: 181 YFFFGSSFIHDG-KTPISPPPYVDPYALLEDERISQIAP 214

[Close]
BLAST of CmaCh16G003040 vs. ExPASy TrEMBL
Match: A0A0A0KY14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000570 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 169/219 (77.17%), Postives = 183/219 (83.56%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCV------- 60
           MA LQILKS++S PSIS   FGSQS+RF S+ DS    +LLHGRRRSLRY CV       
Sbjct: 1   MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFR 60

Query: 61  -----------REEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRGITPTSLLEDT+++DF LGGEM GENRDFSRRS
Sbjct: 61  CAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF L
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAP 202
           YFFLG SF+HDG +TPISPPPYVDPYALLEDERISQ+AP
Sbjct: 181 YFFLGASFIHDG-QTPISPPPYVDPYALLEDERISQIAP 214

[Close]
BLAST of CmaCh16G003040 vs. NCBI nr
Match: XP_022984914.1 (uncharacterized protein LOC111483048 [Cucurbita maxima])

HSP 1 Score: 383.3 bits (983), Expect = 1.3e-102
Identity = 202/220 (91.82%), Postives = 202/220 (91.82%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR------ 60
           MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR      
Sbjct: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVRRRLSFR 60

Query: 61  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS
Sbjct: 61  CAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL
Sbjct: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 203
           YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR
Sbjct: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 220

[Close]
BLAST of CmaCh16G003040 vs. NCBI nr
Match: KAG6576903.1 (hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 381.7 bits (979), Expect = 3.9e-102
Identity = 201/220 (91.36%), Postives = 201/220 (91.36%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR------ 60
           MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRF LLHGRRRSLRYGCVR      
Sbjct: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFR 60

Query: 61  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS
Sbjct: 61  CAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL
Sbjct: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 203
           YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR
Sbjct: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 220

[Close]
BLAST of CmaCh16G003040 vs. NCBI nr
Match: XP_023552655.1 (uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 6.6e-102
Identity = 201/220 (91.36%), Postives = 201/220 (91.36%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR------ 60
           MAVLQILKSTVSPPSISQPKFGSQSSRFF ELDSTRRFVLLHGRRRSLRYGCVR      
Sbjct: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRRRLSFR 60

Query: 61  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS
Sbjct: 61  CAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL
Sbjct: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 203
           YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR
Sbjct: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 220

[Close]
BLAST of CmaCh16G003040 vs. NCBI nr
Match: XP_022922737.1 (uncharacterized protein LOC111430640 [Cucurbita moschata])

HSP 1 Score: 380.6 bits (976), Expect = 8.7e-102
Identity = 200/220 (90.91%), Postives = 201/220 (91.36%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR------ 60
           MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRF LLHGRRRSLRYGCVR      
Sbjct: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFR 60

Query: 61  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120
                       EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS
Sbjct: 61  CAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120

Query: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180
           AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL
Sbjct: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180

Query: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 203
           YFFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPR
Sbjct: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPR 220

[Close]
BLAST of CmaCh16G003040 vs. NCBI nr
Match: KAG7014928.1 (hypothetical protein SDJN02_22559, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.4 bits (960), Expect = 6.2e-100
Identity = 201/239 (84.10%), Postives = 201/239 (84.10%), Query Frame = 0 

Query: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVR------ 60
           MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRF LLHGRRRSLRYGCVR      
Sbjct: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFR 60

Query: 61  -------------------------------EEPPESLFMKELKKRGITPTSLLEDTSNT 120
                                          EEPPESLFMKELKKRGITPTSLLEDTSNT
Sbjct: 61  CAAQDSDKESNGNLRIVATPSETITDVCVCSEEPPESLFMKELKKRGITPTSLLEDTSNT 120

Query: 121 DFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGT 180
           DFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGT
Sbjct: 121 DFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGT 180

Query: 181 FFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 203
           FFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR
Sbjct: 181 FFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 239

[Close]
BLAST of CmaCh16G003040 vs. TAIR 10
Match: AT1G50020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-48
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 0 

Query: 55  EEPPESLFMKELKKRGITPTSLLEDTS-NTDFGLGGEMKGENRDFSRRSAVSTEVDKSLS 114
           EEPPESLFMKELK+RG+TPTSLL+D   + D    G+  G +   S+ +A +   DKSL 
Sbjct: 62  EEPPESLFMKELKRRGMTPTSLLQDYEVDQDEIKTGKETGNS---SKTTATTPAFDKSLL 121

Query: 115 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHD 174
           NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLIV+T+  F ALY + G  F+HD
Sbjct: 122 NQRERSLALNSEGLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSALYLYFGADFIHD 181

Query: 175 GTKTPISPPPYVDPYALLEDERISQMAPR 203
           G++TP+SPPPY+DPYALLEDERIS M PR
Sbjct: 182 GSRTPVSPPPYIDPYALLEDERISGMDPR 207

The following BLAST results are available for this feature:
BLAST of CmaCh16G003040 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh16G003040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JBV16.5e-10391.82uncharacterized protein LOC111483048 OS=Cucurbita maxima OX=3661 GN=LOC111483048... [more]
A0A6J1E4574.2e-10290.91uncharacterized protein LOC111430640 OS=Cucurbita moschata OX=3662 GN=LOC1114306... [more]
A0A6J1D5D95.5e-8679.09uncharacterized protein LOC111017763 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A1S3BY383.9e-8479.00uncharacterized protein LOC103494832 OS=Cucumis melo OX=3656 GN=LOC103494832 PE=... [more]
A0A0A0KY141.4e-8177.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000570 PE=4 SV=1[more]
BLAST of CmaCh16G003040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022984914.11.3e-10291.82uncharacterized protein LOC111483048 [Cucurbita maxima][more]
KAG6576903.13.9e-10291.36hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023552655.16.6e-10291.36uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo][more]
XP_022922737.18.7e-10290.91uncharacterized protein LOC111430640 [Cucurbita moschata][more]
KAG7014928.16.2e-10084.10hypothetical protein SDJN02_22559, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh16G003040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G50020.12.0e-4866.44unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..104
NoneNo IPR availablePANTHERPTHR35699F2J10.10 PROTEINcoord: 45..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G003040.1CmaCh16G003040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane