CmaCh16G002210 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G002210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger CCCH domain-containing protein 54
Location	Cma_Chr16: 1001423 .. 1002079 (-)
RNA-Seq Expression	CmaCh16G002210
Synteny	CmaCh16G002210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCACGAATTCACCGCCGTGGCGCTACCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCAATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGGACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAAAACAAGCTTCATTTTGCTGCTCCCGTGGAGCGTGCGGCGCTGGCCGCACTTAAATATCCAGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCTGAGTTGGAGGCGTCGGAATCCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

mRNA sequence

ATGTTTCAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCACGAATTCACCGCCGTGGCGCTACCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCAATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGGACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAAAACAAGCTTCATTTTGCTGCTCCCGTGGAGCGTGCGGCGCTGGCCGCACTTAAATATCCAGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCTGAGTTGGAGGCGTCGGAATCCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

Coding sequence (CDS)

ATGTTTCAAGGGTTTGTTTTCGGCATCAATGACGTGTACGGTCACGAATTCACCGCCGTGGCGCTACCGGAATTCGCTTACAGGAACACTCGCTTAACGCCACAAACCAATGACACGGCGCTGTTCAACTCCGACGAGTTTCGGATGTACGCTTTCAAGATCCAACGGTGTCCGAAATCCCGCAGCCATGATTGGACGGAATGTCCTTATGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTTAACTACTCTGCTGTGGCTTGCCCTGCCTTTCGGACGGGCAGCTGCCCAAAGGGGGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGACCCGGTACCGGACCCGGGCCTGTAATGCGGGCAGGTTTTGCCAACGCAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCTGAGACCAAAAACAAGCTTCATTTTGCTGCTCCCGTGGAGCGTGCGGCGCTGGCCGCACTTAAATATCCAGTGGAGAGAAAGAACGACGGCGTTTCGGAAATTCCGGTGAAGGAGATCAGCGACGGACTGGGAAATGAACGGAGCTCTGAGTTGGAGGCGTCGGAATCCGAGTTGCCGCACATTGAATGGATATCGGAATTGTTGCAGTAA

Protein sequence

MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGVSEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ

Homology

[Close]

BLAST of CmaCh16G002210 vs. ExPASy Swiss-Prot
Match: O65036 (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=TZF6 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.1e-55
Identity = 110/201 (54.73%), Postives = 132/201 (65.67%), Query Frame = 0


Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR 
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR-PETKNKLH 157
           G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE+LR  E K++  
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 163

Query: 158 FAAPVERAALAALKYPVERKND----GVSEIPVKEISDGLGNERSSEL------------ 217
           +A    RA        V  + D      S  PV+   D L +     L            
Sbjct: 164 YAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWSRMSIVDD 223

[Close]

BLAST of CmaCh16G002210 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-44
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 39  TALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTG 98
           T  F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 99  SCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of CmaCh16G002210 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-44
Identity = 78/138 (56.52%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           ++ D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+++YS  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR------PETKNKL 161
           KGD CEFAHGVFE WLHP RYRT+ C  G  C RK+CFFAHSP++LR      P+  +  
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRVDSF 194

Query: 162 HFAAPVERAALAALKYPV 174
             ++P+   A      PV
Sbjct: 195 DVSSPIRARAFQLSISPV 212

[Close]

BLAST of CmaCh16G002210 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 84/174 (48.28%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           +  D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+F+YS  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR------PETKNKL 161
           +GD CEF+HGVFE WLHP RYRT+ C  G  C+R+VCFFAHSP+++R      P+  +  
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRVDSF 193

Query: 162 HFAAPVERAAL------AALKYPVERKNDGVSEIPVKEISDGLGNERSSELEAS 204
              +P  R A       ++   PV  + D  S   +  +S  LG+   +++ AS
Sbjct: 194 DVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSL--LSRSLGSNLGNDVVAS 245

[Close]

BLAST of CmaCh16G002210 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.6e-43
Identity = 72/104 (69.23%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 45  DEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGD 104
           DEFRMY FK++RC + RSHDWTECP+AH GEKA+RRDPRR+ YS  ACP FR G C +GD
Sbjct: 76  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGGCKRGD 135

Query: 105 FCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
            CEFAHGVFE WLHP RYRT+ C  G  C+R+VCFFAH+P++LR
Sbjct: 136 ACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLR 179

[Close]

BLAST of CmaCh16G002210 vs. ExPASy TrEMBL
Match: A0A6J1JDT4 (zinc finger CCCH domain-containing protein 54 OS=Cucurbita maxima OX=3661 GN=LOC111483496 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.5e-126
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS
Sbjct: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
           SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 218

[Close]

BLAST of CmaCh16G002210 vs. ExPASy TrEMBL
Match: A0A6J1E9W0 (zinc finger CCCH domain-containing protein 54 OS=Cucurbita moschata OX=3662 GN=LOC111430684 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.1e-121
Identity = 211/218 (96.79%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           M QGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQT+DTALFNSDEFRMYAFKIQRCPKS
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK KLHF APV RAALAAL+YPVERKNDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
           SEIPVKEISDGLGNERSSELEASE ELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 218

[Close]

BLAST of CmaCh16G002210 vs. ExPASy TrEMBL
Match: A0A5A7TRB5 (Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00410 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 164/218 (75.23%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           MFQGFVFGINDVYGHEF+AV+LPE    N  LT + +DTA+F++DEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGN--LTEKVDDTAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK+K +  A  +R A+AA++ P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
            EIP +E   G  NERS   + SE ELPHIEWISELL+
Sbjct: 181 LEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of CmaCh16G002210 vs. ExPASy TrEMBL
Match: A0A1S3BYP8 (zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC103494870 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 164/218 (75.23%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           MFQGFVFGINDVYGHEF+AV+LPE    N  LT + +DTA+F++DEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGN--LTEKVDDTAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK+K +  A  +R A+AA++ P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
            EIP +E   G  NERS   + SE ELPHIEWISELL+
Sbjct: 181 LEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of CmaCh16G002210 vs. ExPASy TrEMBL
Match: A0A6J1CJI1 (zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011570 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.5e-73
Identity = 143/227 (63.00%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 1   MFQGFVFGIND-VYGHEFTAVALPEFAYRNTRLTPQTND-TALFNSDEFRMYAFKIQRCP 60
           MFQGF  GIN+ V+ H+F+            +L  Q  D  A+F SDEFRM+A+KIQRCP
Sbjct: 2   MFQGFFPGINNAVFDHDFSGC---------HQLMEQVEDAAAVFGSDEFRMFAYKIQRCP 61

Query: 61  KSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLH 120
           ++RSHDWTECPYAHRGEKAQRRD RRFNYSAVACPAFR G+CP+GDFCE+AHGVFE+WLH
Sbjct: 62  RTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLH 121

Query: 121 PTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKND 180
           P RYRTRACNAGRFCQRKVCFFAH+PE+LR ETK K HF A   R  + A++ P+E KND
Sbjct: 122 PARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKND 181

Query: 181 GVSEI-------PVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
            VS I        V+EI +   N+R+   E S+S+LPHI WI ELLQ
Sbjct: 182 DVSNIVNGLKGLTVREIRE-RKNDRNFGWEVSDSDLPHIGWIRELLQ 218

[Close]

BLAST of CmaCh16G002210 vs. NCBI nr
Match: XP_022985508.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita maxima])

HSP 1 Score: 461.8 bits (1187), Expect = 3.2e-126
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS
Sbjct: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
           SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 218

[Close]

BLAST of CmaCh16G002210 vs. NCBI nr
Match: XP_022922815.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita moschata])

HSP 1 Score: 445.7 bits (1145), Expect = 2.4e-121
Identity = 211/218 (96.79%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           M QGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQT+DTALFNSDEFRMYAFKIQRCPKS
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK KLHF APV RAALAAL+YPVERKNDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGV 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
           SEIPVKEISDGLGNERSSELEASE ELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 218

[Close]

BLAST of CmaCh16G002210 vs. NCBI nr
Match: XP_023553083.1 (zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444.1 bits (1141), Expect = 6.9e-121
Identity = 210/218 (96.33%), Postives = 212/218 (97.25%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           M QGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQT+DTALFNSDEFRMYAFKIQRCPKS
Sbjct: 1   MLQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKS 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK KLHF APV R ALAAL+YPVERKNDGV
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARVALAALEYPVERKNDGV 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
           SEIPVKEISDGLGNERSSELEASE ELPHIEWISELLQ
Sbjct: 181 SEIPVKEISDGLGNERSSELEASEFELPHIEWISELLQ 218

[Close]

BLAST of CmaCh16G002210 vs. NCBI nr
Match: KAG6576828.1 (Zinc finger CCCH domain-containing protein 54, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014849.1 Zinc finger CCCH domain-containing protein 54, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 429.1 bits (1102), Expect = 2.3e-116
Identity = 202/210 (96.19%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 9   INDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKSRSHDWTEC 68
           +NDVYGHEFTAVALPEF YRNTRLTPQT+DTALFNSDEFRMYAFKIQRCPKSRSHDWTEC
Sbjct: 1   MNDVYGHEFTAVALPEFGYRNTRLTPQTDDTALFNSDEFRMYAFKIQRCPKSRSHDWTEC 60

Query: 69  PYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACN 128
           PYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACN
Sbjct: 61  PYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPTRYRTRACN 120

Query: 129 AGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGVSEIPVKEI 188
           AGRFCQRKVCFFAHSPEELRPETK KLHF APV RAALAAL+YPVERKNDGVSEIPVKEI
Sbjct: 121 AGRFCQRKVCFFAHSPEELRPETKLKLHFDAPVARAALAALEYPVERKNDGVSEIPVKEI 180

Query: 189 SDGLGNERSSELEASESELPHIEWISELLQ 219
           SDGLGNERSSELEASE ELPHIEWISELLQ
Sbjct: 181 SDGLGNERSSELEASEFELPHIEWISELLQ 210

[Close]

BLAST of CmaCh16G002210 vs. NCBI nr
Match: XP_008454474.1 (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044676.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa] >TYK16906.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa])

HSP 1 Score: 355.5 bits (911), Expect = 3.2e-94
Identity = 164/218 (75.23%), Postives = 188/218 (86.24%), Query Frame = 0


Query: 1   MFQGFVFGINDVYGHEFTAVALPEFAYRNTRLTPQTNDTALFNSDEFRMYAFKIQRCPKS 60
           MFQGFVFGINDVYGHEF+AV+LPE    N  LT + +DTA+F++DEFRMY++KIQRCP++
Sbjct: 1   MFQGFVFGINDVYGHEFSAVSLPEVTVGN--LTEKVDDTAVFSTDEFRMYSYKIQRCPRN 60

Query: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPT 120
           RSHDWTECPYAHRGEKAQRRDPRRFNY+AVACPAFR+GSCPKGDFCEFAHGVFE+WLHP 
Sbjct: 61  RSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPA 120

Query: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKNKLHFAAPVERAALAALKYPVERKNDGV 180
           RYRTRACNAGRFCQRKVCFFAHSPEELRPETK+K +  A  +R A+AA++ P E KNDG+
Sbjct: 121 RYRTRACNAGRFCQRKVCFFAHSPEELRPETKHKFNLNAQRQRVAVAAVESPPEEKNDGI 180

Query: 181 SEIPVKEISDGLGNERSSELEASESELPHIEWISELLQ 219
            EIP +E   G  NERS   + SE ELPHIEWISELL+
Sbjct: 181 LEIPARENGGGRKNERSFGFDVSELELPHIEWISELLK 216

[Close]

BLAST of CmaCh16G002210 vs. TAIR 10
Match: AT5G07500.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-56
Identity = 110/201 (54.73%), Postives = 132/201 (65.67%), Query Frame = 0


Query: 38  DTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRT 97
           D A++ SDEFRMYA+KI+RCP++RSHDWTECPYAHRGEKA RRDPRR+ Y AVACPAFR 
Sbjct: 44  DDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRN 103

Query: 98  GSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR-PETKNKLH 157
           G+C +GD CEFAHGVFE+WLHP RYRTRACNAG  CQRKVCFFAH+PE+LR  E K++  
Sbjct: 104 GACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCR 163

Query: 158 FAAPVERAALAALKYPVERKND----GVSEIPVKEISDGLGNERSSEL------------ 217
           +A    RA        V  + D      S  PV+   D L +     L            
Sbjct: 164 YAYRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDSNEEKVLLKCWSRMSIVDD 223

[Close]

BLAST of CmaCh16G002210 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-45
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 39  TALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTG 98
           T  F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 99  SCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of CmaCh16G002210 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-45
Identity = 74/110 (67.27%), Postives = 91/110 (82.73%), Query Frame = 0


Query: 39  TALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTG 98
           T  F+SDEFR+Y FKI+RC + RSHDWTECP+AH GEKA+RRDPR+F+YS  ACP FR G
Sbjct: 83  TDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKG 142

Query: 99  SCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR 149
           SC +GD CEF+HGVFE WLHP+RYRT+ C  G  C+R++CFFAH+ E+LR
Sbjct: 143 SCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of CmaCh16G002210 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 179.5 bits (454), Expect = 2.9e-45
Identity = 78/138 (56.52%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           ++ D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+++YS  ACP FR G C 
Sbjct: 75  YSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 134

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR------PETKNKL 161
           KGD CEFAHGVFE WLHP RYRT+ C  G  C RK+CFFAHSP++LR      P+  +  
Sbjct: 135 KGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLHTRSPDRVDSF 194

Query: 162 HFAAPVERAALAALKYPV 174
             ++P+   A      PV
Sbjct: 195 DVSSPIRARAFQLSISPV 212

[Close]

BLAST of CmaCh16G002210 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 177.9 bits (450), Expect = 8.5e-45
Identity = 84/174 (48.28%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 42  FNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFRTGSCP 101
           +  D FRMY FK++RC + RSHDWTECPYAH GEKA+RRDPR+F+YS  ACP FR G C 
Sbjct: 74  YTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCK 133

Query: 102 KGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELR------PETKNKL 161
           +GD CEF+HGVFE WLHP RYRT+ C  G  C+R+VCFFAHSP+++R      P+  +  
Sbjct: 134 RGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSPDRVDSF 193

Query: 162 HFAAPVERAAL------AALKYPVERKNDGVSEIPVKEISDGLGNERSSELEAS 204
              +P  R A       ++   PV  + D  S   +  +S  LG+   +++ AS
Sbjct: 194 DVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSL--LSRSLGSNLGNDVVAS 245

The following BLAST results are available for this feature:

BLAST of CmaCh16G002210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65036	3.1e-55	54.73	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	4.1e-44	67.27	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	4.1e-44	56.52	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82199	1.2e-43	48.28	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6L4N4	4.6e-43	69.23	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CmaCh16G002210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDT4	1.5e-126	100.00	zinc finger CCCH domain-containing protein 54 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1E9W0	1.1e-121	96.79	zinc finger CCCH domain-containing protein 54 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7TRB5	1.6e-94	75.23	Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BYP8	1.6e-94	75.23	zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1CJI1	1.5e-73	63.00	zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia ...	[more]

BLAST of CmaCh16G002210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985508.1	3.2e-126	100.00	zinc finger CCCH domain-containing protein 54 [Cucurbita maxima]	[more]
XP_022922815.1	2.4e-121	96.79	zinc finger CCCH domain-containing protein 54 [Cucurbita moschata]	[more]
XP_023553083.1	6.9e-121	96.33	zinc finger CCCH domain-containing protein 54 [Cucurbita pepo subsp. pepo]	[more]
KAG6576828.1	2.3e-116	96.19	Zinc finger CCCH domain-containing protein 54, partial [Cucurbita argyrosperma s...	[more]
XP_008454474.1	3.2e-94	75.23	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044...	[more]

BLAST of CmaCh16G002210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07500.1	2.2e-56	54.73	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	2.9e-45	67.27	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	2.9e-45	67.27	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	2.9e-45	56.52	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G19810.1	8.5e-45	48.28	CCCH-type zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 86..112 e-value: 6.1E-7 score: 39.1 coord: 121..144 e-value: 13.0 score: 7.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 91..111 e-value: 4.9E-6 score: 26.3
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 86..113 score: 13.525563
None	No IPR available	GENE3D	4.10.1000.10		coord: 81..156 e-value: 1.6E-8 score: 36.2
None	No IPR available	PANTHER	PTHR14493:SF109	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54	coord: 35..175
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 35..175
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 85..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002210.1	CmaCh16G002210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0006349	regulation of gene expression by genetic imprinting
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000976	transcription cis-regulatory region binding