CmaCh16G001500 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G001500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTraB family protein
LocationCma_Chr16: 664084 .. 664846 (-)
RNA-Seq ExpressionCmaCh16G001500
SyntenyCmaCh16G001500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAAACGGAATTTCCGATACCGATACGGTAACTGACTGTGACTGAGAGTGGGTGACAGAATTAGGGGTTAGTACAATCGGTGTTTTCCGCAGAAACGCGTCAACCAACCACGTGTCTGTTATGTAGGTGACAGACAAGGTCCACTACACTTAATTAAACCCATACCCTCCCTCCCACTTGTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTNCCCCCCCTCCCCCTTGTTCCTTTTTTTTTTTTTTTTCTTTTTATTTATGTAACACATCATTTTGTAATAGTTTATCTGTTTAATTTGATTGCGACATTTAACTTTATTTTTAAATTATCTCTATTATTATTATTATTATTATATAGTGAAAATGAAATTTGTAATCCAAATCATATCCACTCTTGATGATCGAGTCATGATTCATACAAAACCAAGGAAAAGTTGTAAATATATTTTCTTTTTGTGACCATACCCCCATGTCTCTAAAACCCACCAAGCTTTAGACTTTGATTTACGATCCGAGATCTCTCGGGATTCCAGAGCCACCATTGCTGCCGTTCACGTTTGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTGTCCCGGTCTGGATTTGGATACAATATGGCTCGACAGAACTTCGCATATTTTCCCCAAATCAGTTTAAGATGTCGAGCGAGTTGTTCGAGGCAGTGAAGCCTGATAATGGTTCGGTCGAGCTTTGCAGTAGCAGGCAAGTTTGA

mRNA sequence

ATGAAAGAAAACGGAATTTCCGATACCGATACGAGCCACCATTGCTGCCGTTCACGTTTGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTGTCCCGGTCTGGATTTGGATACAATATGGCTCGACAGAACTTCGCATATTTTCCCCAAATCAGTTTAAGATGTCGAGCGAGTTGTTCGAGGCAGTGAAGCCTGATAATGGTTCGGTCGAGCTTTGCAGTAGCAGGCAAGTTTGA

Coding sequence (CDS)

ATGAAAGAAAACGGAATTTCCGATACCGATACGAGCCACCATTGCTGCCGTTCACGTTTGATTTGGCTGACGATGGCACGTTGGTTTCGGTTCACAAGACGAGATTTTGGTCCTGTCCCGGTCTGGATTTGGATACAATATGGCTCGACAGAACTTCGCATATTTTCCCCAAATCAGTTTAAGATGTCGAGCGAGTTGTTCGAGGCAGTGAAGCCTGATAATGGTTCGGTCGAGCTTTGCAGTAGCAGGCAAGTTTGA

Protein sequence

MKENGISDTDTSHHCCRSRLIWLTMARWFRFTRRDFGPVPVWIWIQYGSTELRIFSPNQFKMSSELFEAVKPDNGSVELCSSRQV
Homology
BLAST of CmaCh16G001500 vs. TAIR 10
Match: AT5G52030.2 (TraB family protein )

HSP 1 Score: 41.6 bits (96), Expect = 3.7e-04
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = 0

Query: 33  RRDFGPVPVW---------IWIQYGSTELRIFSPNQFKMSSELFEAVKPDNGSVELCSSR 86
           ++ FGPVP W         IW+  G++ +   SP    +   +   VKPDN +VELC SR
Sbjct: 75  KQSFGPVPAWRKEFVEPEAIWL-VGTSHI---SPESASIVERVVRTVKPDNVAVELCRSR 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G52030.23.7e-0437.10TraB family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G001500.1CmaCh16G001500.1mRNA