CmaCh16G001110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G001110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	sec-independent protein translocase protein TATB, chloroplastic-like
Location	Cma_Chr16: 500726 .. 503809 (-)
RNA-Seq Expression	CmaCh16G001110
Synteny	CmaCh16G001110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATTCCCATAACCATGGCCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCGTCTTCATCTTCATCTTCCTCGTCCATCTTATACCCCAAAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCTCTGCATCTCCGGCTTTACTCTCCATGGAATGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGGTATGGATATACTTTTTGATGATTGATTCAAGTAATAGTTCATATTTGTTTGAATTAAACGTTTATTGATCTTTGTTCTTGTTATGTTGTCTAAAATGGTGTTGTTGTAGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTCTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTGAGTGGTATAAATCATGTAGATGACTGAAATTTTGGAAATATTTGGCTGCCTCTGATGTGTTCTTTTACACATTTTAACTTGTTGCGGAACCTGAATATTGAAGTATTACATTTCATTCTCGTTTAAGGTATCTGTTAGGCTTTGGAGTTGTGCTGGGAATAGCAGCATGAAACTTCACTTACATTAATACTCTAGTCTTTATTGTCTTGAGCCACTGCGGAGAATCACCAGGTTGTATTGTTGTTGATGTCAACAAGGATAGCTTCTAATGTTATTGCTCAGCCTTCGATACTAGGGAGAGATTTCCACACCTTATAAGAAATGTTTCATTCTCATCTCCAATCAATATGGGATCTCACGATCCACCCTCCTTGGGGGCTCCTCGCTGGCACATCGCTCGGTGTCTGGCTTTAATCCATTTGTAACCGCACAAGCCTACTGCTAACTGATATTATCTACTTTGGCCTATTACGTATCACCGTCAACCTTACGGTGTTAAAATGCGTCTACTAGGGATAGGTTTCCACAACTTATAAGGAATGTTTCGTTCCCCTTTCCAACCAACGTGGGATCTCACAATCCACCCTCCTTAGGGTCTAGCTTCCTCACTAGCACACCGCTTGGTGTCTAGCTCTAATACCATTTGTAACAGCCTAAGCCCACCGCCGATAGATATTGTCCGCTTTGGCCCGTTATGTATCCTCGTCAACCTCACGATTTTAAAACGCGTCTACTAGGGAGAGATTTCCACACCTTATAAGGAATGTTTCGTTCCCTTCTCCAACCAACGTAAGATCTCACAATCCATCCCCCTTGGGGGCCAGCGTCCTCACTAGCACACTGTTCGGTGTCTAACTTTAATACCATTTGTAACAATTCAAGCCCACCGATAGCAGATATTATCCGTTTTGGTCCGTTACGTATCACAGTCAGCTTCATAGTTTTAAAACGCGTCTAATAGGGAGAGGTTTCCACACCTTTATAAGGAATGTTTCATTCCCCTCTCCAACGGACGTGGGATCTCACATGAACTATCCTAACCCCACCCATCAAACAAAAGGGAATTTGTTTTTGATTGAGAGCATCTAGGATATAATAAGACCCTTTGCGTCGTATAAAAAAAAAACTCAAAGTGACATTGATTACCAAGTCTTTACAAAAACCTGAAAACCATTTGGACAGGTTTGCTGTAAAGGATATCAGTAAGTACTTTCGTTGGACTGGAATTTAGTTTACTTATTTATATGCCAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGTAATCATATTTCGGTTTTTGAGATTTTCCAGCATCACTTCTTAAAGACCTTCTTGTGGTTTTTTGCTCTTCATGTATGTCTGTAGGACGTTTCTCGAGAATTCAAGACCACACTTGAGCAAGAAATTGGTCTCGACGAAATCTCGAGTCCAGTCGAAAGCTCATACAATTCAAGCAAATCAGATACCTTCTCAAACCCACCTTTTGTTCCTAAAGCAGAAGAGTCTTTTGCAGTGGCTGAACCAAGTGAGTGGTTAACTTATTTGTCATCCATATTTTTATTTATTATCAGCACTTGTAGTATTCTAGGGAAAGATTTCAAAGCTACATAGAAAAAGTAGAATGCCAAAGGGGAAAAGAATATTGGTAATCAGCCTTGGTTCGCCGTCGGGCATCGTGTCTACGAATGATACGATTGGGTTCAATCATTAGGGATATAGAATCATCATTCTGTCAGCCTCGACTATTATACGATAATGAAAGATCGTTTTCTTATGTATATAAACAGCTGATAATTCTTTATCAGCAAGCAAAGCATACACCACTGAAGAGTACCTTAAGATTGCTAAAACCAAATCACTTTGGTCCTATTTGGTAGCTTTTTGGATGAACCAGTGTTTATAAGCTTTGTTTTAAAAATGCGCTATCACTCTAACATGTATGAACTTGTAACAGGAGGCGTCGAAGCACCTGTCGTGGTGGCTCCCGAACTCCAAAATCTTGAAGCAGGTAAGGTTGAGGAGTCTACTGCCTCAAGTCCTGGAGCTGAAAAATAAAGTTATTAGAATCGATTTTGGATGGAGGAGTATTTCTTTTAGGTGGTCGATTTAGAAAATTATGTGTTAGTGATTGAAGCTCCTAGGAGAGAAATGATTCTATTAGTGTCTTGGAACTTAACCCGCTTATTGATCTGGTCATGATGAAATGGGGTAAATGGTCGAGGCTACTTGAAGGCTTACTTTTTGGTTGACAGGTATTGTGACAGGTATTCCCATGATCGATTCAATAGATCTTTTCTTTTTCCGTTCATATTTCGAATTGGGTTTATCCTTGTAGTAATCGTATGAACACGATGGTAGTATAAACTCGATGGTACCCATTCAGATTCAACGTGAGAAAAGAACCATGCAGCAACCTGAGCCCTAAAGAGGAGAGGGGCAGGAGCACTCCAATTCGAAAGGCGTGCCGTTTGAAAGACTATATATGTGTATATATATATATATAATCCAAAGTTTTGTAACAAATTTGCCATAATTAAAAATATGCATAGATATTACAAGGTTAAACGAGCACAATAAGAAAAGAAGAAAAAGACAAGGAATATTAG

mRNA sequence

ATAATTCCCATAACCATGGCCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCGTCTTCATCTTCATCTTCCTCGTCCATCTTATACCCCAAAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCTCTGCATCTCCGGCTTTACTCTCCATGGAATGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTCTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGACGTTTCTCGAGAATTCAAGACCACACTTGAGCAAGAAATTGGTCTCGACGAAATCTCGAGTCCAGTCGAAAGCTCATACAATTCAAGCAAATCAGATACCTTCTCAAACCCACCTTTTGTTCCTAAAGCAGAAGAGTCTTTTGCAGTGGCTGAACCAAGAGGCGTCGAAGCACCTGTCGTGGTGGCTCCCGAACTCCAAAATCTTGAAGCAGGTAAGGTTGAGGAGTCTACTGCCTCAAGTCCTGGAGCTGAAAAATAAAGTTATTAGAATCGATTTTGGATGGAGGAGTATTTCTTTTAGGTGGTCGATTTAGAAAATTATGTGTTAGTGATTGAAGCTCCTAGGAGAGAAATGATTCTATTAGTGTCTTGGAACTTAACCCGCTTATTGATCTGGTCATGATGAAATGGGGTAAATGGTCGAGGCTACTTGAAGGCTTACTTTTTGGTTGACAGGTATTGTGACAGGTATTCCCATGATCGATTCAATAGATCTTTTCTTTTTCCGTTCATATTTCGAATTGGGTTTATCCTTGTAGTAATCGTATGAACACGATGGTAGTATAAACTCGATGGTACCCATTCAGATTCAACGTGAGAAAAGAACCATGCAGCAACCTGAGCCCTAAAGAGGAGAGGGGCAGGAGCACTCCAATTCGAAAGGCGTGCCGTTTGAAAGACTATATATGTGTATATATATATATATAATCCAAAGTTTTGTAACAAATTTGCCATAATTAAAAATATGCATAGATATTACAAGGTTAAACGAGCACAATAAGAAAAGAAGAAAAAGACAAGGAATATTAG

Coding sequence (CDS)

ATGGCCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCGTCTTCATCTTCATCTTCCTCGTCCATCTTATACCCCAAAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCTCTGCATCTCCGGCTTTACTCTCCATGGAATGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTCTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGACGTTTCTCGAGAATTCAAGACCACACTTGAGCAAGAAATTGGTCTCGACGAAATCTCGAGTCCAGTCGAAAGCTCATACAATTCAAGCAAATCAGATACCTTCTCAAACCCACCTTTTGTTCCTAAAGCAGAAGAGTCTTTTGCAGTGGCTGAACCAAGAGGCGTCGAAGCACCTGTCGTGGTGGCTCCCGAACTCCAAAATCTTGAAGCAGGTAAGGTTGAGGAGTCTACTGCCTCAAGTCCTGGAGCTGAAAAATAA

Protein sequence

MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPRGVEAPVVVAPELQNLEAGKVEESTASSPGAEK

Homology

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BLAST of CmaCh16G001110 vs. ExPASy Swiss-Prot
Match: Q94G16 (Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum OX=3888 GN=TATB PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.3e-39
Identity = 97/183 (53.01%), Postives = 124/183 (67.76%), Query Frame = 0


Query: 17  SSSSSSSILYPK--TPKIRLSLCN------------FPLHLRLYSPWNGLKHLGISSRGR 76
           +SS+S+ +L PK  T  + LS C             + L  RL++PWNG K LG S++ +
Sbjct: 8   ASSTSTMLLCPKLGTCSMSLSTCTPTSHSKIHHFHLYSLGKRLFTPWNGFKQLGFSTKPK 67

Query: 77  FP----ERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 136
            P      +K   KGK V+ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLR F
Sbjct: 68  KPLFHFIGKKGRCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREF 127

Query: 137 QPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAE 182
           QPTIRE+QDVSREFK+TLE+EIG+D+I++P++S+Y+S+  +T   P        S    +
Sbjct: 128 QPTIREIQDVSREFKSTLEREIGIDDITNPLQSTYSSNVRNTTPTPSATEITNNSQTAVD 187

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BLAST of CmaCh16G001110 vs. ExPASy Swiss-Prot
Match: Q9XH75 (Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATB PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.9e-35
Identity = 102/195 (52.31%), Postives = 124/195 (63.59%), Query Frame = 0


Query: 16  SSSSSSSSIL------YP------KTPKIRLSLCNFPLHLRLYSPWNGLKHLG--ISSRG 75
           +SSSSS +I       YP      K  K  LS     L    +SP+ GLKHLG  IS + 
Sbjct: 9   ASSSSSPTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHLGISISPKS 68

Query: 76  RFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPT 135
             PE+++R  K   + ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLRTFQPT
Sbjct: 69  SNPEKKRRC-KSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPT 128

Query: 136 IRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFS-----NPPFVPKAEESFAV 192
           IRELQDVSR+FK+TLE+EIGLD+IS+P  + YN ++++         PP VP  E     
Sbjct: 129 IRELQDVSRDFKSTLEREIGLDDISTP--NVYNQNRTNPVQPPPPPPPPSVPSTEAPVTA 188

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BLAST of CmaCh16G001110 vs. ExPASy Swiss-Prot
Match: Q2R237 (Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATB PE=2 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 5.3e-28
Identity = 81/160 (50.62%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 53  KHLGISSRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLG 112
           +H     R R     KR  +G  V+ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LG
Sbjct: 52  RHHRFLLRRRRRTESKRTSRGTGVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLG 111

Query: 113 KTLRTFQPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEE 172
           KTLR FQPTIRELQDVSREF++TLE+EIGLDE+  P   +Y     +  S  P + ++ +
Sbjct: 112 KTLRAFQPTIRELQDVSREFRSTLEREIGLDEV--PPSMNYRPPTMNN-SQQPAIDQSSD 171

Query: 173 SFAVAEPRGVEAPVVVAPELQNLEAGKVEESTASSPGAEK 213
               A P   E  + V  E     A     +    P  +K
Sbjct: 172 DKPEAAPYTSEELIKVTEEQLAASAAAAWNTQEPPPSQQK 208

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BLAST of CmaCh16G001110 vs. ExPASy Swiss-Prot
Match: O48950 (Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays OX=4577 GN=TATB PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 80/171 (46.78%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 49  WNGLKHLGISSR--GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAE 108
           W G++   I +R    F     R  +   + ASLFGVGAPEALVIGVVALLVFGPKGLAE
Sbjct: 37  WKGVEWGSIQTRMVSSFVAVGSRTRRRNVICASLFGVGAPEALVIGVVALLVFGPKGLAE 96

Query: 109 VARTLGKTLRTFQPTIRELQDVSREFKTTLEQEIGLDEISS-----PVESSYNSS-KSDT 168
           VAR LGKTLR FQPTIRELQDVSREF++TLE+EIG+DE+S      P   + N    +D 
Sbjct: 97  VARNLGKTLRAFQPTIRELQDVSREFRSTLEREIGIDEVSQSTNYRPTTMNNNQQPAADP 156

Query: 169 FSNPPFVPKAEESFAVAEPRGVEAPVVVAPELQNLEAGKVEESTASSPGAE 212
              P   P   E         + A    A   Q     + +E   ++P +E
Sbjct: 157 NVKPEPAPYTSEELMKVTEEQIAASAAAAWNPQQPATSQQQEEAPTTPRSE 207

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BLAST of CmaCh16G001110 vs. ExPASy Swiss-Prot
Match: Q8DJ44 (Sec-independent protein translocase protein TatA OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=tatA PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-09
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 79  SLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQD-VSREFKTTLE 138
           ++FG+G PE +VI VVALL+FGPK L E+ R+LGKT R F+   RE QD + R+     E
Sbjct: 2   NVFGIGLPELIVILVVALLIFGPKKLPEIGRSLGKTKRAFEEASREFQDEIKRQTAALEE 61

Query: 139 QEIGLDEISSPVESS 153
           ++    E  SP E S
Sbjct: 62  EQQAKAEAESPREIS 76

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BLAST of CmaCh16G001110 vs. ExPASy TrEMBL
Match: A0A6J1JC75 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483089 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.1e-108
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60
           MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR
Sbjct: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60

Query: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120
           GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP
Sbjct: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120

Query: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPR 180
           TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPR
Sbjct: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPR 180

Query: 181 GVEAPVVVAPELQNLEAGKVEESTASSPGAEK 213
           GVEAPVVVAPELQNLEAGKVEESTASSPGAEK
Sbjct: 181 GVEAPVVVAPELQNLEAGKVEESTASSPGAEK 212

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BLAST of CmaCh16G001110 vs. ExPASy TrEMBL
Match: A0A6J1JC13 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483089 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.0e-90
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60
           MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR
Sbjct: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60

Query: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120
           GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP
Sbjct: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120

Query: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEP 180
           TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEP
Sbjct: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEP 179

[Close]

BLAST of CmaCh16G001110 vs. ExPASy TrEMBL
Match: A0A6J1EA68 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430756 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 4.4e-86
Identity = 175/191 (91.62%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSS--ILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGIS 60
           M SKFPVPTFPFSPSSSSSSSSS  ILYPKT KIRLSLCN PL LRL+SPW+GLKHLGIS
Sbjct: 1   MTSKFPVPTFPFSPSSSSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGIS 60

Query: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120
           SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF
Sbjct: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120

Query: 121 QPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAE 180
           QPTIRELQDVSREFKTTLE+EIGLDEISSPV+SSYNSSKS+T+SNPPFVPK EE  AVAE
Sbjct: 121 QPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEEPVAVAE 180

Query: 181 PRGVEAPVVVA 190
           PRGVEAPV VA
Sbjct: 181 PRGVEAPVAVA 191

[Close]

BLAST of CmaCh16G001110 vs. ExPASy TrEMBL
Match: A0A6J1E4U8 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430756 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 166/181 (91.71%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSS--ILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGIS 60
           M SKFPVPTFPFSPSSSSSSSSS  ILYPKT KIRLSLCN PL LRL+SPW+GLKHLGIS
Sbjct: 1   MTSKFPVPTFPFSPSSSSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGIS 60

Query: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120
           SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF
Sbjct: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120

Query: 121 QPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAE 180
           QPTIRELQDVSREFKTTLE+EIGLDEISSPV+SSYNSSKS+T+SNPPFVPK EE  AVAE
Sbjct: 121 QPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEEPVAVAE 180

[Close]

BLAST of CmaCh16G001110 vs. ExPASy TrEMBL
Match: A0A6J1E842 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430756 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.9e-81
Identity = 166/181 (91.71%), Postives = 172/181 (95.03%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSS--ILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGIS 60
           M SKFPVPTFPFSPSSSSSSSSS  ILYPKT KIRLSLCN PL LRL+SPW+GLKHLGIS
Sbjct: 1   MTSKFPVPTFPFSPSSSSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGIS 60

Query: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120
           SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF
Sbjct: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120

Query: 121 QPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAE 180
           QPTIRELQDVSREFKTTLE+EIGLDEISSPV+SSYNSSKS+T+SNPPFVPK EE  AVAE
Sbjct: 121 QPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEEPVAVAE 180

[Close]

BLAST of CmaCh16G001110 vs. NCBI nr
Match: XP_022984983.1 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 401.0 bits (1029), Expect = 6.5e-108
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60
           MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR
Sbjct: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60

Query: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120
           GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP
Sbjct: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120

Query: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPR 180
           TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPR
Sbjct: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPR 180

Query: 181 GVEAPVVVAPELQNLEAGKVEESTASSPGAEK 213
           GVEAPVVVAPELQNLEAGKVEESTASSPGAEK
Sbjct: 181 GVEAPVVVAPELQNLEAGKVEESTASSPGAEK 212

[Close]

BLAST of CmaCh16G001110 vs. NCBI nr
Match: KAG7014758.1 (Sec-independent protein translocase protein TATB, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.7 bits (940), Expect = 1.4e-97
Identity = 197/213 (92.49%), Postives = 204/213 (95.77%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60
           MASKFPVPTFPFSPSSSSSSSS ILYPKT KIRLSLCNFPL LRL+SPW+GLKHL ISSR
Sbjct: 1   MASKFPVPTFPFSPSSSSSSSSPILYPKTAKIRLSLCNFPLRLRLFSPWSGLKHLDISSR 60

Query: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120
           GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF+P
Sbjct: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFRP 120

Query: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPR 180
           TIRELQDVSREFKTTLE+EIGLDEISSPV+SSYNSSKS+T+SNPPFVPK EE  AVAEPR
Sbjct: 121 TIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEEPVAVAEPR 180

Query: 181 GVEAPVVVAPELQNLEAGKVEESTA-SSPGAEK 213
           GVEAPV VAPELQNLEAGKVEESTA SSPGAEK
Sbjct: 181 GVEAPVAVAPELQNLEAGKVEESTASSSPGAEK 213

[Close]

BLAST of CmaCh16G001110 vs. NCBI nr
Match: XP_022984984.1 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 342.8 bits (878), Expect = 2.1e-90
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60
           MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR
Sbjct: 1   MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSR 60

Query: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120
           GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP
Sbjct: 61  GRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQP 120

Query: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEP 180
           TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEP
Sbjct: 121 TIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEP 179

[Close]

BLAST of CmaCh16G001110 vs. NCBI nr
Match: XP_022922925.1 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 327.4 bits (838), Expect = 9.1e-86
Identity = 175/191 (91.62%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSS--ILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGIS 60
           M SKFPVPTFPFSPSSSSSSSSS  ILYPKT KIRLSLCN PL LRL+SPW+GLKHLGIS
Sbjct: 1   MTSKFPVPTFPFSPSSSSSSSSSSPILYPKTAKIRLSLCNLPLRLRLFSPWSGLKHLGIS 60

Query: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120
           SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF
Sbjct: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120

Query: 121 QPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAE 180
           QPTIRELQDVSREFKTTLE+EIGLDEISSPV+SSYNSSKS+T+SNPPFVPK EE  AVAE
Sbjct: 121 QPTIRELQDVSREFKTTLEREIGLDEISSPVDSSYNSSKSNTYSNPPFVPKPEEPVAVAE 180

Query: 181 PRGVEAPVVVA 190
           PRGVEAPV VA
Sbjct: 181 PRGVEAPVAVA 191

[Close]

BLAST of CmaCh16G001110 vs. NCBI nr
Match: XP_023552416.1 (sec-independent protein translocase protein TATB, chloroplastic-like isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.6 bits (836), Expect = 1.6e-85
Identity = 174/185 (94.05%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MASKFPVPTFPFSPSSSSSSSSS--ILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGIS 60
           MASKFPVPTFPFSPSSSSSSSSS  ILYPKT KI LSLCNFPL LRL+SPW+GLKHL IS
Sbjct: 1   MASKFPVPTFPFSPSSSSSSSSSSPILYPKTAKIGLSLCNFPLRLRLFSPWSGLKHLDIS 60

Query: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120
           SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF
Sbjct: 61  SRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTF 120

Query: 121 QPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAE 180
           QPTIRELQDVSREFKTTLE+EIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFA+AE
Sbjct: 121 QPTIRELQDVSREFKTTLEREIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAMAE 180

Query: 181 PRGVE 184
           PRGV+
Sbjct: 181 PRGVD 185

[Close]

BLAST of CmaCh16G001110 vs. TAIR 10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 148.3 bits (373), Expect = 7.0e-36
Identity = 102/195 (52.31%), Postives = 124/195 (63.59%), Query Frame = 0


Query: 16  SSSSSSSSIL------YP------KTPKIRLSLCNFPLHLRLYSPWNGLKHLG--ISSRG 75
           +SSSSS +I       YP      K  K  LS     L    +SP+ GLKHLG  IS + 
Sbjct: 9   ASSSSSPTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHLGISISPKS 68

Query: 76  RFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPT 135
             PE+++R  K   + ASLFGVGAPEALVIGVVALLVFGPKGLAEVAR LGKTLRTFQPT
Sbjct: 69  SNPEKKRRC-KSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPT 128

Query: 136 IRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFS-----NPPFVPKAEESFAV 192
           IRELQDVSR+FK+TLE+EIGLD+IS+P  + YN ++++         PP VP  E     
Sbjct: 129 IRELQDVSRDFKSTLEREIGLDDISTP--NVYNQNRTNPVQPPPPPPPPSVPSTEAPVTA 188

[Close]

BLAST of CmaCh16G001110 vs. TAIR 10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 51.6 bits (122), Expect = 9.0e-07
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 79  SLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSREFKTTLEQ 138
           +LFG+G PE  VI  VA L+FGPK L E+ +++GKT+++FQ   +E +    E KT  E+
Sbjct: 62  ALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFES---ELKTEPEE 121

Query: 139 EIGLDEISSPVESSYNSSKSDT 161
            +     SS V +S    +  T
Sbjct: 122 SVA---ESSQVATSNKEEEKKT 137

The following BLAST results are available for this feature:

BLAST of CmaCh16G001110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94G16	2.3e-39	53.01	Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum...	[more]
Q9XH75	9.9e-35	52.31	Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis t...	[more]
Q2R237	5.3e-28	50.63	Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa ...	[more]
O48950	1.7e-26	46.78	Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays OX=4...	[more]
Q8DJ44	5.5e-09	48.00	Sec-independent protein translocase protein TatA OS=Thermosynechococcus elongatu...	[more]

BLAST of CmaCh16G001110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JC75	3.1e-108	100.00	sec-independent protein translocase protein TATB, chloroplastic-like isoform X1 ...	[more]
A0A6J1JC13	1.0e-90	100.00	sec-independent protein translocase protein TATB, chloroplastic-like isoform X2 ...	[more]
A0A6J1EA68	4.4e-86	91.62	sec-independent protein translocase protein TATB, chloroplastic-like isoform X3 ...	[more]
A0A6J1E4U8	1.9e-81	91.71	sec-independent protein translocase protein TATB, chloroplastic-like isoform X2 ...	[more]
A0A6J1E842	1.9e-81	91.71	sec-independent protein translocase protein TATB, chloroplastic-like isoform X1 ...	[more]

BLAST of CmaCh16G001110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984983.1	6.5e-108	100.00	sec-independent protein translocase protein TATB, chloroplastic-like isoform X1 ...	[more]
KAG7014758.1	1.4e-97	92.49	Sec-independent protein translocase protein TATB, chloroplastic, partial [Cucurb...	[more]
XP_022984984.1	2.1e-90	100.00	sec-independent protein translocase protein TATB, chloroplastic-like isoform X2 ...	[more]
XP_022922925.1	9.1e-86	91.62	sec-independent protein translocase protein TATB, chloroplastic-like isoform X3 ...	[more]
XP_023552416.1	1.6e-85	94.05	sec-independent protein translocase protein TATB, chloroplastic-like isoform X4 ...	[more]

BLAST of CmaCh16G001110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52440.1	7.0e-36	52.31	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G28750.1	9.0e-07	39.02	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01506	TATBPROTEIN	coord: 80..100 score: 40.46 coord: 100..119 score: 28.57
None	No IPR available	GENE3D	1.20.5.3310		coord: 80..128 e-value: 2.6E-17 score: 64.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..24
None	No IPR available	PANTHER	PTHR33162	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC	coord: 11..179
None	No IPR available	PANTHER	PTHR33162:SF3	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATB, CHLOROPLASTIC	coord: 11..179
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	TatA_B_E	coord: 83..133 e-value: 4.5E-23 score: 80.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G001110.1	CmaCh16G001110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0043953	protein transport by the Tat complex
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0015031	protein transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane