CmaCh16G001070 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G001070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	rRNA 2'-O-methyltransferase fibrillarin
Location	Cma_Chr16: 477548 .. 485377 (-)
RNA-Seq Expression	CmaCh16G001070
Synteny	CmaCh16G001070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGCCGCAGCCCCTATAAATTTAAAACCCCAAACAACCTTTCCTCACTTCGCCCGTGTTTGTTCTAAAACCCTAGCGGAAACTAAGCTCCTTCTCTCGCTCTCTCGCTCTCTCGGTGACTGCAATGAGACCTCCACGAGGTATGAACTAGAAAGAAGCTGAACTTGTGCTCCTTGTTCTTTCTCTATTCTTGTTTTTGGGTGAAAAAGATCTGCTGGCTTCAATGGAGAATGCTGTGTTAACTCAATTTATTGGTTGTCTGCTTGTTCCGATGTTCGAATGAGTTTGACCGCTTCCATTCCTAATACCCACTGAATCTGCTTCCATATAATATCGTTTATCGGTTGTTTGATAGTTGGTTTCCTCTCTTTAGTGTTATTTAGTTCTCATGTACTTTCTTTCTTTTACTTAAATTATTTGTTTCCTAGCGTCTCCATTACTACGCATCGATCATTAAACTGGGTAAGTTGGATGTGTGCAGGCCGCGGTGGTGGTGGTGGGTTTAGGGGCAGGGGTGATGGAGGACGAGGTGGTAGAGGCAGAGGTGGCGGTGGAGGCAGAGGCGGCGGTGGAGGAAGAGGTATGAGCCGTGGAGGTGGTCGCGGAGGTGGAAGAGGCCGTGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTTGTTGAACCTCATAGACATGAGGGTATTTTCATAGCCAAGGGCAAAGAAGATGCTCTTGTGACGAAGAATATGGTTTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGGTGATTCGCGTTTAACAGTAATTTTATACCTGAATGTGTGTTAGGTTTCAATATACATTTTATTGAAGTCGATGGATACCATGTTTTTTCTGGATAACTTCGATGATGTGTTTTTGATATTTAATTATACTTCAAAAATTCTAGTTAGTAATCGTATCTCCCAACAGTTTTGGATGGTTCAGGCACGTCAGTCAGTGCTTGTATATGTTTTTTATACATTAACTGTTTATGTAAGTCTAACATAACTTCCGATGCCTGCAAGTTTTGTCAGCATAAAGAACTATTTGTTCCTTCTGTTTGCAATGTGCCTGCAAAGCTAATTATTTTGTATATATTGCCATTCAGAATGAAGATGGAACAAAAGTTGAATACAGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATTTGGATTGTTAGTGCCTTTCATATTCAATTTGACGTTGGACTTTTTAATCTGTCTCAACCTTTAGTGTTCCTTTCCGTGTCTCTCTTGCTAAATAGTTCGCTTACTCTTGTATTATAGAAACCTGGTGCTCGAGTTTTGTATCTTGGGGCTGCTTCGGGAACAACTGTATCTCATGTTTCAGATGTTGTTGGCCCGGTGAGTAATTATCTCGAGAGGCATCTTGTAGTTTTCTTAAATTAATAGAGTTCTTAACAAATGTTGCTGCTTTTATTTTTCAGACTGGTATTGTATATGCCGTCGAATTCTCCCATAGAAGTGGTAGAGATTTAGTTAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAATATCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCGGATGTTGCTCAGCCAGATCAGGTTCAGACTTTTTCTTTTTCTTGCTTTCCTGTCTGTATTATTCTTTTACGTGCGCATCATCCAACTAACTAACCCTTAAATGGTATTTCAATATTCAATGTGTATTGATTTTCATCTACCGTTTCCCTCTCTACTGTTTTGTTTTCATCACTATTTTTTCATCTATTTAGACTTTAAGCATGTTTCATCTCCATTATTTAGCATATGATGAATTTCTCGGATTCCCCTTCAAGACTTCTTGAATGATGCATAACCCGAGTTTCTGATGCTTGAAGAAATGCTTCCTTTTGAATTGACTTGATCTTTTCTTTCTAAATTGCACTATTTGTCTCATACTGCGGATTTTTTTTTTCTATACTCGTATTGGTTCTGTTTTCCTTTTTTCACTGTTTTTCATCCTGTTATATTTCAAATATATGTTATCATAACAGTGAAGCTTATTTTTATTGTACCTGAACCCTTTCTAGTTAGTTTCTCAAGTTGTGTTTCTTCAGTTTTCTACTCTTTTGAAATATTTTTATTCCAATATTGACATGTCCATTGCCATTTATTTCTGCTTTGATGCTAACCACCTTGTTTACTTTGCGTCTGCTATGTTCCAATATTGACATGTCATCACGTTTATTATGCTATACACATCACGCCTCTTTTTTTTGTTTGGTAGAAGGCCAAGATCTTTGCTGGTTACTTAGATTTCTAAAGGCCATGTTTACAATATTGCTCTATTTATGTTTGGATTTGGATGGTAACTATTTATAAACCATTCTGCTCGATCATTAAGTAAATCAGTATATTACTATTCTATACTATTACTGTTTGCAAATGGTTACCATTTTATACTCAGCCTTAATTCCCCCGAAAATCAATATATTAGTGGAGCATGTTCTTGTGTATTTATGATAATTATCGACTTTGAATTTCCCATAAAAGATGATGATCTACTCTGAAACAGGGGGTGTTTTGGGGTTTATAATCTTTTAAAGTAGAAATTAAAAGTAAAAAAAAAAAAACCCAAATCTGCACTATTTATTTCATCTTTTGGATATGTGGGATATGGTCTCTTAACTTATTTCCGTTGAGCTATTGTACTATCTTTTCATGATGTTTTAACCTTTTTGGCTCTATGTGCTTAGCATGTGATGATTTACTCGGATTCCCCTTCAAGACATCTTGAATGATGCACAACCCGAGTTTCTGATGCGACCAAGAACAATATTATATTTTGTGTCCTTGAACTATTAACTTTCTTACATTTTGGTTTCTTAACCTTTACCTTCTTTAACCTCCCTTCAATACAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGCTGGTGGTCATTTTGTTATATCCATCAAGGTGAGTGAATTATTGCTCTATTATTCCTTAAGACAAAAAGACGGCATAATCCGTGAATGGAGGAAGATAACATATTTCCTATCTAACTTATGCAGGCTAACTGCATCGACTCAACCGTTCCTGCAGAGGCAGTGTTTGCAAGTGAAGTGAATAAGCTAAAAGCAGATCAATTCAAACCCACTGAGCAAGTGACTCTTGAACCATTTGAGCGAGATCATGCTTGTGTCGTTGGTATCTATCGGGCACCAAAGAAACAGAAGGCTGCAGCTTAAACAGTTCAATGAGCCAAGGTTATGAGTCTTATGGTTGATTTATAGGTAGACTGTAGTTTATTATCCGTGTTTCTTATCGTTAGCTTGTAATCGAGATCGAGATGTTTTAAAAAGCCAATACTCAATGTGTATCTTCGATAATTTTGGTGATTAATCGACAGAACTGCAGGTTTTTTTTTTTACTCTCTCTGTTTCATTCCTGTCTGCAAGGAGTATAAGAAAGTCTTTAAATTGTAGGATCCATTTTTAATCGGAACCATTCAAAGCGAACACTCTTCATGCAATTTGCGTTTCAGACGTTGATTAATTTTTTTTATTTATTTATTGAACTATAATATGTTTGTGTATGCATTGTTGGTTGTCTATGAAATTTTCTATTAACTTTGACTATTTATTTAAATTATATCAGATTGGTAGGATTTTCAACCTTGATTATAAGATTAATTCCATAAAATATATATTAACGTAATATATTTCCACTAAATCATTTGAATATTTGTGTGTAACTGAACACAATAATCTTTAATCTTATAATTTAAAAATGAATTACTTTTTTTAATGTTAAAAACAAATCCTAATATTCTGTCAACGGTCGTTTCATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAGAAAAAGGAAAGAATAAGTTCATGGTAGTAATTTTATAGAGTACTCAAGGGAAGGGTATTAATGTAAAATCACTGAAAGAAAAAAGGAGAAAAGTTACCGTTGGAGACGCGTTGCTGGTATATAAGTACAGTCTCGTTCAAGAACTCCCAATTTTGCAACGAACAAAAACTCTACAAAATCGCTCAAAAGATTTCCACTAGAGATTTGAGGTAGTTGAAATCAAGGAACATTTCGTAAGGGAAAGTTAAATCGTCGCTGTGTTCTCTTCTAACTGTGAGTTTCTCTCTGACTTTTCCATTTCATGCTGTTGTTTTGTCGAGGAACGTGCGAATAGAAGTTTCTTTCGTGGTCGAATCTTGTTTGATTTCTCTTGATTACTGTTTATTTCTGTGTTTAACTGAGAAACAGATGAGCAGCAAGAAATTGATGAAATGTGATGAACAATATTTTAGGGTTTTGTTTGGTCAAATTTTGTTTCTGGAAATTTATTGTCCTGTCTTTTGACCTATGTCCTCGACAGATGATAAAATGAGAAACTGGAGAAATTTCATAATGTTAAGTTAGGCTTGTTCTGTATGTACTCTTTTCTTCCTATAGGAAATTTGATTCTCTGTTTTTGAGATTTGAAATTAGGAAGATTCTCATTACAAATTCAGAACGAAAATTATGAAAAGAGGAAAGATTAACCTTACGAAATCTTCAGTCATAATTCGATTTTAGTTTTGCAACCTTGAAATGAATTTTAGTTTTAATTCTATTCAATTGGATTCTCTGTTATTTGAGTCCTTATAACTGGTCCACATGTAGCATGTAAGCCTTTTGCCTTGAGTTCGTCGCTAAAATTTCACACTCGGTTCCGTTTTCTCATTCGCAGAATATAATATACATTTCTGCAGTATCAACAGCATGGCAATGACATTGCAAAGTGGTGGCCTTACTCAGGATGAGAATCTCAATGTTCGCTATAATGGTTGGAACTTAATTTTCTGTTTGAATTTTTGTGTTGGTTCGTTCTTAATCTATTTGGATGATTTGGTTTAACATTGTAATTTTCATCTCAGGATCCGCCGTTGCAGGGAAGGCTAATGCCATGAATTCACAAAGAAAAAGTGGGCTTAGCGGGCGAAAGCCTCTTGGCGATCTATCAAACTCGAGAAAGCCAGACTTAAACCAGTCATCAAAATGGCAAAACACAAAGAATCTCACGTTTATTGATGAAGAAACTGGTGCAGGCAAAAAGAAAAACATACTCAAGGGCTCTGAGAAGGTGCAGAAGGGAACTCGAAAAGTACTCTCGGATATTTCGAACTCTGGAATGCCAAACCTGCCGGAGGCCTCAAAGAAGAAGCAGAAATTGAAACTGAGCACTGTAAGGGAAGAATCTCTCCATCACAATGCTATTTGTGAGGAACGCTTCCTGCACAACCATCAAGATTGCATTAAATCACAAAATAGCGCTATGGACAAGGATCAATTTCTGAGCATCGTTGGACTTGGTATGGTTCTATCTCGCAAAGCCCATTTTTCTTTGATATTTCTAGTAATTTTTGTTCATATCTTTTGTTTCTTCTTGTTATTTAGATCTTCCCAATGAGTTGATGACATCCACTAGAAGAAAGGTCAGTTTTGATGATATCCCCTTAGTTCTATAGTCCTTGTGGACTTTGGAGCAAAACATAACCAGTTAGCATTTTCTGGGTTTCAGCCTGATAGTCCATTGAAGCTCATGGAAATGGCAGAATTGGCAGTTGTTGATCGATCTCCAAAGAAGTTGTGTCTGTTTGGAAGGGGATGGCCCGCCTCATCGCCGCCTTGCAAATCCCCAAAATCACCCTCAGTGGATACATTTTCTCTCTGGAAGGACACCGATAGTATCAACTTCACATTGATAAAGACCCTATGAGCGCACCAAAGGCCTTTGTTCTCTGTTGATAAAGGAGGGGGTTGTAGATTCCTGGATGCTTAAGATTGTTTAAAATCTAGAGAAGTTGTAGCTGAAGTTTTTCTGTGTTTTGATTTAGATGAAGATTTGTTATCATCTCTAAGATTCTTTTGGGAAAGGTCATCTGAAAAGATTTGTAATGGAACAGATCTTTTTTTGATTGAGAGAAGATTGTTATCATTCCCATATATAAATAAATTTCTAATTCACAATTCCTCTTTCGTTTTAAAACGCGTCAAAATGAAGAAGAGAGCGAGACATTCTTGATAAGGGTTTAGAAACTTCTAACTTAGCAGACGCGTTTTACAATTGTGAGACTGACAGTTATATTTAACGAGATAGTATCTTTTAGCGAGTTTTGGGCTGTTACAAATAATATTAGAGTTAGTCATCTCGAAGAAAGATAGTGATAAACCTGAAGATCGTTCTTAGTGCGGCTCTGCTTCTTGTTTAAAAGCAAGTCTTCAAACTGCAGGGATAAAGCTCTAGACTTGATGGAAATTCACTTTCTGGGACATTTAGGTTAGTGCTTACTTTTTATGATTAACAACAAACACCAACGTTAACATTTTCAGCATATGTTGTCTGGTTAGCTGCCAAAAGATATTCATGTTCATCGTTTTTGCATAGACAAAGATGAATTGAGAGTTCAAGAAGAAATGTATTTAGTATACGTTGGCGTACTTGAATGAGAATACAAGAACATAAGCTTTTTTTACTTCACAATCCAACACGTTCATATACGGTATTGACACAGGTTTGAATTTTAAATTCAGCAATGTTCTTCCAAGTTTTTACCAGGTGAAACTCATAGCATGAAAATTTAGATTATCTCCATAAGCAGTTGAACAGATTTTCGCTACGTCATGGCGCATCCCCATCGGGCCGCTGACCAAAACTCCGATATCCGATCCTTTACAGTCCAGAAGAATTCCTGCATTACAAAACATGTTACCATATTGATGTTGGTTGCTGTTTATGTCGAGGATTGTTGAGCCTTGATTAATGTAAGGAATAATCACGAGTTTATAAGTAAAGAATAAATCTCCATTGGTACGAATCTTTGGGAAGCTCAAAGTAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATGTCACTGTGGAGAGTCGTGGTTCTTAACCGTTTATGTATGTGTGCGTGCTTTTGGTTAATACAAAGGTAGGAAAGCTTACTCTTGAGATCAGGCCTGCCCCCATAATGGATGTTGGTTGCTTGAACAAGGGGTTGGTAGGGAAGGCTCTCAAGCTCTCTTTCACCTCCAAAGATCCATGACCCGGGTGATGCTTTTGGGGATTGAACATTAAGAACTTGGACTTGTTTGTTTGAAACATATGTTTTCCTTTGCCACATAAGGACCAAGCTAGAACATATGCAAATACAAGCAAGTGAAAGGAACATGTCCCAAAGAACCTTGTAGGTGTAATTGTAAACAGCGTCACCATTTCGTTCGATCGGGTAAATGTAGTAACGAGTAATGATACCTAAAAGAATCAAGAACATCACAAATGAAGACGAGATGACTGTGCCGAGTAGCAGCCAATTGTTTGGTCCAAGAGCCTCTGACACTGGTGAGTCCATTGGATTTGGCTTAAACCATATTGTGTTTATAAGATTTTCCTCATTTGTTTGTGGCTGTTCTTCCTCTCTGGTGATATAAGCATCAATCTGTAATGGTACATTAGAAATCTCTGTTTGTGTGCTAGATACTGGAAGCAAGAGATCCAACATGGTGAGATCAATGGAGTTCTTGAAGGCGCATACGAGGCGCACTTGTGGAACATGGCAGTTCGGTTTCGTGCTTCGAACGATCATAATCTCTCGGATTATCGAAATGAACGGAGTAATCCCGCTTCCTCCGCTTATCAGGAGCAAAGATTCATGCCTGATAAAACATCAATCAAATTCAAGTAA

mRNA sequence

GGCGCCGCAGCCCCTATAAATTTAAAACCCCAAACAACCTTTCCTCACTTCGCCCGTGTTTGTTCTAAAACCCTAGCGGAAACTAAGCTCCTTCTCTCGCTCTCTCGCTCTCTCGGTGACTGCAATGAGACCTCCACGAGGCCGCGGTGGTGGTGGTGGGTTTAGGGGCAGGGGTGATGGAGGACGAGGTGGTAGAGGCAGAGGTGGCGGTGGAGGCAGAGGCGGCGGTGGAGGAAGAGGTATGAGCCGTGGAGGTGGTCGCGGAGGTGGAAGAGGCCGTGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTTGTTGAACCTCATAGACATGAGGGTATTTTCATAGCCAAGGGCAAAGAAGATGCTCTTGTGACGAAGAATATGGTTTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAGTTGAATACAGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATTTGGATTAAACCTGGTGCTCGAGTTTTGTATCTTGGGGCTGCTTCGGGAACAACTGTATCTCATGTTTCAGATGTTGTTGGCCCGACTGGTATTGTATATGCCGTCGAATTCTCCCATAGAAGTGGTAGAGATTTAGTTAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAATATCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCGGATGTTGCTCAGCCAGATCAGGCTAACTGCATCGACTCAACCGTTCCTGCAGAGGCAGTGTTTGCAAGTGAAGTGAATAAGCTAAAAGCAGATCAATTCAAACCCACTGAGCAAGTGACTCTTGAACCATTTGAGCGAGATCATGCTTGTGTCGTTGGATCCGCCGTTGCAGGGAAGGCTAATGCCATGAATTCACAAAGAAAAAGTGGGCTTAGCGGGCGAAAGCCTCTTGGCGATCTATCAAACTCGAGAAAGCCAGACTTAAACCAGTCATCAAAATGGCAAAACACAAAGAATCTCACGTTTATTGATGAAGAAACTGGTGCAGGCAAAAAGAAAAACATACTCAAGGGCTCTGAGAAGGTGCAGAAGGGAACTCGAAAAGTACTCTCGGATATTTCGAACTCTGGAATGCCAAACCTGCCGGAGGCCTCAAAGAAGAAGCAGAAATTGAAACTGAGCACTGTAAGGGAAGAATCTCTCCATCACAATGCTATTTGTGAGGAACGCTTCCTGCACAACCATCAAGATTGCATTAAATCACAAAATAGCGCTATGGACAAGGATCAATTTCTGAGCATCGTTGGACTTGATCTTCCCAATGAGTTGATGACATCCACTAGAAGAAAGCCTGATAGTCCATTGAAGCTCATGGAAATGGCAGAATTGGCAGTTGTTGATCGATCTCCAAAGAAGTTGTGTCTGTTTGGAAGGGGATGGCCCGCCTCATCGCCGCCTTGCAAATCCCCAAAATCACCCTCAGTGGATACATTTTCTCTCTGGAAGGACACCGATAACAAAGATGAATTGAGAGTTCAAGAAGAAATATACTGGAAGCAAGAGATCCAACATGGTGAGATCAATGGAGTTCTTGAAGGCGCATACGAGGCGCACTTGTGGAACATGGCAGTTCGGTTTCGTGCTTCGAACGATCATAATCTCTCGGATTATCGAAATGAACGGAGTAATCCCGCTTCCTCCGCTTATCAGGAGCAAAGATTCATGCCTGATAAAACATCAATCAAATTCAAGTAA

Coding sequence (CDS)

ATGAGACCTCCACGAGGCCGCGGTGGTGGTGGTGGGTTTAGGGGCAGGGGTGATGGAGGACGAGGTGGTAGAGGCAGAGGTGGCGGTGGAGGCAGAGGCGGCGGTGGAGGAAGAGGTATGAGCCGTGGAGGTGGTCGCGGAGGTGGAAGAGGCCGTGGTGGAGGAAGAGGAGGTGGTATGAAGGGTGGAAGCAAAGTTGTTGTTGAACCTCATAGACATGAGGGTATTTTCATAGCCAAGGGCAAAGAAGATGCTCTTGTGACGAAGAATATGGTTTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAGTTGAATACAGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATTTGGATTAAACCTGGTGCTCGAGTTTTGTATCTTGGGGCTGCTTCGGGAACAACTGTATCTCATGTTTCAGATGTTGTTGGCCCGACTGGTATTGTATATGCCGTCGAATTCTCCCATAGAAGTGGTAGAGATTTAGTTAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAATATCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCGGATGTTGCTCAGCCAGATCAGGCTAACTGCATCGACTCAACCGTTCCTGCAGAGGCAGTGTTTGCAAGTGAAGTGAATAAGCTAAAAGCAGATCAATTCAAACCCACTGAGCAAGTGACTCTTGAACCATTTGAGCGAGATCATGCTTGTGTCGTTGGATCCGCCGTTGCAGGGAAGGCTAATGCCATGAATTCACAAAGAAAAAGTGGGCTTAGCGGGCGAAAGCCTCTTGGCGATCTATCAAACTCGAGAAAGCCAGACTTAAACCAGTCATCAAAATGGCAAAACACAAAGAATCTCACGTTTATTGATGAAGAAACTGGTGCAGGCAAAAAGAAAAACATACTCAAGGGCTCTGAGAAGGTGCAGAAGGGAACTCGAAAAGTACTCTCGGATATTTCGAACTCTGGAATGCCAAACCTGCCGGAGGCCTCAAAGAAGAAGCAGAAATTGAAACTGAGCACTGTAAGGGAAGAATCTCTCCATCACAATGCTATTTGTGAGGAACGCTTCCTGCACAACCATCAAGATTGCATTAAATCACAAAATAGCGCTATGGACAAGGATCAATTTCTGAGCATCGTTGGACTTGATCTTCCCAATGAGTTGATGACATCCACTAGAAGAAAGCCTGATAGTCCATTGAAGCTCATGGAAATGGCAGAATTGGCAGTTGTTGATCGATCTCCAAAGAAGTTGTGTCTGTTTGGAAGGGGATGGCCCGCCTCATCGCCGCCTTGCAAATCCCCAAAATCACCCTCAGTGGATACATTTTCTCTCTGGAAGGACACCGATAACAAAGATGAATTGAGAGTTCAAGAAGAAATATACTGGAAGCAAGAGATCCAACATGGTGAGATCAATGGAGTTCTTGAAGGCGCATACGAGGCGCACTTGTGGAACATGGCAGTTCGGTTTCGTGCTTCGAACGATCATAATCTCTCGGATTATCGAAATGAACGGAGTAATCCCGCTTCCTCCGCTTATCAGGAGCAAAGATTCATGCCTGATAAAACATCAATCAAATTCAAGTAA

Protein sequence

MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGSAVAGKANAMNSQRKSGLSGRKPLGDLSNSRKPDLNQSSKWQNTKNLTFIDEETGAGKKKNILKGSEKVQKGTRKVLSDISNSGMPNLPEASKKKQKLKLSTVREESLHHNAICEERFLHNHQDCIKSQNSAMDKDQFLSIVGLDLPNELMTSTRRKPDSPLKLMEMAELAVVDRSPKKLCLFGRGWPASSPPCKSPKSPSVDTFSLWKDTDNKDELRVQEEIYWKQEIQHGEINGVLEGAYEAHLWNMAVRFRASNDHNLSDYRNERSNPASSAYQEQRFMPDKTSIKFK

Homology

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BLAST of CmaCh16G001070 vs. ExPASy Swiss-Prot
Match: Q9FEF8 (rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana OX=3702 GN=FIB1 PE=1 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.0e-103
Identity = 229/295 (77.63%), Postives = 239/295 (81.02%), Query Frame = 0


Query: 1   MRPP--RGRGGGGGFRGRGDGGRG-GRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRG 60
           MRPP   GRGGGG   GR  GGRG G GR  GGGR G  GR   RG GRG  RGRGG   
Sbjct: 1   MRPPVTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGPPR 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120
           GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTKVEYRV
Sbjct: 61  GGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180
           WNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRS
Sbjct: 121 WNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRS 180

Query: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ-------------- 240
           GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ              
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKT 240

Query: 241 ---------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                    ANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG
Sbjct: 241 GGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVG 295

[Close]

BLAST of CmaCh16G001070 vs. ExPASy Swiss-Prot
Match: Q94AH9 (rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana OX=3702 GN=FIB2 PE=1 SV=2)

HSP 1 Score: 376.7 bits (966), Expect = 4.5e-103
Identity = 233/306 (76.14%), Postives = 244/306 (79.74%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGG-RGGRGRGG-GGGRGG---GGGRGMSRGGGRGGGRG--RG 60
           MRPP    GGG   GRG GG  GGRG GG  GGRGG   GGGRG S  GGRG GRG  RG
Sbjct: 1   MRPPLTGSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRG 60

Query: 61  GGRG-------GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQ 120
           G RG       GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQ
Sbjct: 61  GARGGRGPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQ 120

Query: 121 NEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTG 180
           NEDGTK EYRVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G
Sbjct: 121 NEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEG 180

Query: 181 IVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ--- 240
            VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   
Sbjct: 181 CVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240

Query: 241 --------------------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERD 270
                               ANCIDSTVPAEAVF +EV KL+ +QFKP EQVTLEPFERD
Sbjct: 241 LALNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERD 300

[Close]

BLAST of CmaCh16G001070 vs. ExPASy Swiss-Prot
Match: Q8I1F4 (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 7.5e-90
Identity = 208/301 (69.10%), Postives = 230/301 (76.41%), Query Frame = 0


Query: 5   RGRGGGGGFRGRG--DGGRGGRGRGGG--------GGRGGGGGRGMSRGGGRGGGRGRGG 64
           RGRGGGG   GRG   GGRGG GRGGG        GGRGGGGGRG   GGGRGGG   GG
Sbjct: 41  RGRGGGGDRGGRGGFGGGRGGGGRGGGGGGGRGGFGGRGGGGGRG---GGGRGGGGRGGG 100

Query: 65  GRG---GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGT 124
           GRG   GG KGG  V +EPHRHEG+FIA+GKEDALVT+N V G  VY EKRISV+N +G 
Sbjct: 101 GRGGGAGGFKGGKTVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGE 160

Query: 125 KVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAV 184
           K+EYRVWNPFRSKLAAAVLGGV+ I + PG++VLYLGAASGTTVSHVSDVVGP G+VYAV
Sbjct: 161 KIEYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAV 220

Query: 185 EFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ-------- 244
           EFSHRSGRDL+N+AKKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ        
Sbjct: 221 EFSHRSGRDLINVAKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNA 280

Query: 245 ---------------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVV 270
                          A+CIDST   EAVFASEV K++AD+ KP EQ+TLEP+ERDHA VV
Sbjct: 281 QHFLKNGGHFVISIKASCIDSTAQPEAVFASEVKKMQADKLKPQEQLTLEPYERDHAVVV 337

[Close]

BLAST of CmaCh16G001070 vs. ExPASy Swiss-Prot
Match: P22509 (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=1 SV=2)

HSP 1 Score: 330.1 bits (845), Expect = 4.9e-89
Identity = 204/294 (69.39%), Postives = 228/294 (77.55%), Query Frame = 0


Query: 6   GRGGGGGF-RGRGDGGRGGRGRGGGG----GRGGGGGRGMSRGGGRGGGRGRGGGRGG-- 65
           GRGG GGF  GRG  G GGRGRGGGG    GRGGGGGRG   G   GGGRGRGGGRGG  
Sbjct: 27  GRGGRGGFGGGRGGFGGGGRGRGGGGGGFRGRGGGGGRG--GGFQSGGGRGRGGGRGGKR 86

Query: 66  GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 125
           G + G  V+VEPHRHEG+FI +GKEDALVTKN+V GESVY EKR+S+ +E   K+EYR W
Sbjct: 87  GNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRAW 146

Query: 126 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 185
           NPFRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSG
Sbjct: 147 NPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSG 206

Query: 186 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ--------------- 245
           RDL+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ               
Sbjct: 207 RDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNG 266

Query: 246 --------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                   ANCIDST  AEAVFASEV K++ +  KP EQ+TLEP+ERDHA VVG
Sbjct: 267 GHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVG 317

[Close]

BLAST of CmaCh16G001070 vs. ExPASy Swiss-Prot
Match: P35550 (rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus OX=10090 GN=Fbl PE=1 SV=2)

HSP 1 Score: 329.7 bits (844), Expect = 6.4e-89
Identity = 204/297 (68.69%), Postives = 228/297 (76.77%), Query Frame = 0


Query: 6   GRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGG--RGMSRGGGRGGG------RGRGGGRG 65
           GRGGG G RG   GGRGG G GGG GRGGGGG  RG   GGGRGGG      RGRGGGRG
Sbjct: 23  GRGGGRGGRGGFGGGRGGFG-GGGRGRGGGGGGFRGRGGGGGRGGGFQSGGNRGRGGGRG 82

Query: 66  G--GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEY 125
           G  G + G  V+VEPHRHEG+FI +GKEDALVTKN+V GESVY EKR+S+ +E   K+EY
Sbjct: 83  GKRGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEY 142

Query: 126 RVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSH 185
           R WNPFRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSD+VGP G+VYAVEFSH
Sbjct: 143 RAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSH 202

Query: 186 RSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ------------ 245
           RSGRDL+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ            
Sbjct: 203 RSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFL 262

Query: 246 -----------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                      ANCIDST  AEAVFASEV K++ +  KP EQ+TLEP+ERDHA VVG
Sbjct: 263 RNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVG 317

[Close]

BLAST of CmaCh16G001070 vs. ExPASy TrEMBL
Match: A0A6J1JA27 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita maxima OX=3661 GN=LOC111483086 PE=3 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 1.2e-130
Identity = 269/292 (92.12%), Postives = 269/292 (92.12%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60

Query: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 120
           KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP
Sbjct: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 120

Query: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180
           FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD
Sbjct: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180

Query: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ----------------- 240
           LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                 
Sbjct: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 240

Query: 241 ------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                 ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 292

[Close]

BLAST of CmaCh16G001070 vs. ExPASy TrEMBL
Match: A0A6J1E4P7 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita moschata OX=3662 GN=LOC111430753 PE=3 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 2.6e-130
Identity = 268/292 (91.78%), Postives = 269/292 (92.12%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60

Query: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 120
           KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRI+VQNEDGTKVEYRVWNP
Sbjct: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRIAVQNEDGTKVEYRVWNP 120

Query: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180
           FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD
Sbjct: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180

Query: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ----------------- 240
           LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                 
Sbjct: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 240

Query: 241 ------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                 ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 292

[Close]

BLAST of CmaCh16G001070 vs. ExPASy TrEMBL
Match: A0A6J1CHH3 (mediator of RNA polymerase II transcription subunit 36a-like OS=Momordica charantia OX=3673 GN=LOC111011688 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 3.8e-129
Identity = 268/293 (91.47%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM-SRGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKVV+EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN
Sbjct: 61  MKGGSKVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ---------------- 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 -------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                  ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 293

[Close]

BLAST of CmaCh16G001070 vs. ExPASy TrEMBL
Match: A0A1S3AY25 (mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=3656 GN=LOC103484122 PE=3 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 8.5e-129
Identity = 267/293 (91.13%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM-SRGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKRISVQNEDGTK+EYRVWN
Sbjct: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRISVQNEDGTKIEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ---------------- 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 -------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                  ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 293

[Close]

BLAST of CmaCh16G001070 vs. ExPASy TrEMBL
Match: A0A6J1HX74 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita maxima OX=3661 GN=LOC111467690 PE=3 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 1.2e-127
Identity = 266/293 (90.78%), Postives = 268/293 (91.47%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM-SRGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRG GGGRGM SRGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGFGGGRGMASRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRVWN
Sbjct: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP+GIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ---------------- 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 -------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                  ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 293

[Close]

BLAST of CmaCh16G001070 vs. NCBI nr
Match: KAG6576706.1 (rRNA 2'-O-methyltransferase fibrillarin 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 848.6 bits (2191), Expect = 3.1e-242
Identity = 475/558 (85.13%), Postives = 477/558 (85.48%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60
           MRPPRGR GGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM
Sbjct: 1   MRPPRGR-GGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60

Query: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 120
           KGGSKVV+EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP
Sbjct: 61  KGGSKVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 120

Query: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180
           FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD
Sbjct: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180

Query: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ----------------- 240
           LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                 
Sbjct: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 240

Query: 241 ------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVV--------- 300
                 ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVV         
Sbjct: 241 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIITDYSPK 300

Query: 301 --------------------------------------------GSAVAGKANAMNSQRK 360
                                                       GSAVAGKANAMNSQRK
Sbjct: 301 WIFNWILCYLSPYNWSICSIINSMAMTLQSGGLTQDENLNVRYNGSAVAGKANAMNSQRK 360

Query: 361 SGLSGRKPLGDLSNSRKPDLNQSSKWQNTKNLTFIDEETGAGKKKNILKGSEKVQKGTRK 420
           SGLSGRKPLGDLSNSRKPDLNQSSK QNTKNLTFIDEETGAGKKKNILKGSEKVQKGTRK
Sbjct: 361 SGLSGRKPLGDLSNSRKPDLNQSSKLQNTKNLTFIDEETGAGKKKNILKGSEKVQKGTRK 420

Query: 421 VLSDISNSGMPNLPEASKKKQKLKLSTVREESLHHNAICEERFLHNHQDCIKSQNSAMDK 480
           VLSDISNSGMPNLPEASKKKQKLKLSTVRE+SLHHNAICEERFLHNHQDCIKSQNSAMDK
Sbjct: 421 VLSDISNSGMPNLPEASKKKQKLKLSTVREKSLHHNAICEERFLHNHQDCIKSQNSAMDK 480

Query: 481 DQFLSIVGLDLPNELMTSTRRKPDSPLKLMEMAELAVVDRSPKKLCLFGRGWPASSPPCK 483
           DQFLSIVGLD P ELMTSTRRKPDSPLKLMEMAELAVVDRSPKKLCLFGRGWP SSPPCK
Sbjct: 481 DQFLSIVGLDFPKELMTSTRRKPDSPLKLMEMAELAVVDRSPKKLCLFGRGWPDSSPPCK 540

[Close]

BLAST of CmaCh16G001070 vs. NCBI nr
Match: XP_022984980.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxima] >KAG7014755.1 Mediator of RNA polymerase II transcription subunit 36a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 476.9 bits (1226), Expect = 2.5e-130
Identity = 269/292 (92.12%), Postives = 269/292 (92.12%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60

Query: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 120
           KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP
Sbjct: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 120

Query: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180
           FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD
Sbjct: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180

Query: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ----------------- 240
           LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                 
Sbjct: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 240

Query: 241 ------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                 ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 292

[Close]

BLAST of CmaCh16G001070 vs. NCBI nr
Match: XP_022922917.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita moschata])

HSP 1 Score: 475.7 bits (1223), Expect = 5.5e-130
Identity = 268/292 (91.78%), Postives = 269/292 (92.12%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGGM 60

Query: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 120
           KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRI+VQNEDGTKVEYRVWNP
Sbjct: 61  KGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRIAVQNEDGTKVEYRVWNP 120

Query: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180
           FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD
Sbjct: 121 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 180

Query: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ----------------- 240
           LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                 
Sbjct: 181 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 240

Query: 241 ------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                 ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 292

[Close]

BLAST of CmaCh16G001070 vs. NCBI nr
Match: XP_023552409.1 (mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 472.2 bits (1214), Expect = 6.0e-129
Identity = 269/293 (91.81%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM-SRGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN
Sbjct: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ---------------- 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 -------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                  ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 293

[Close]

BLAST of CmaCh16G001070 vs. NCBI nr
Match: XP_022141240.1 (mediator of RNA polymerase II transcription subunit 36a-like [Momordica charantia])

HSP 1 Score: 471.9 bits (1213), Expect = 7.9e-129
Identity = 268/293 (91.47%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM-SRGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGM SRGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKVV+EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN
Sbjct: 61  MKGGSKVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ---------------- 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ                
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 -------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                  ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 293

[Close]

BLAST of CmaCh16G001070 vs. TAIR 10
Match: AT5G52470.1 (fibrillarin 1 )

HSP 1 Score: 377.9 bits (969), Expect = 1.4e-104
Identity = 229/295 (77.63%), Postives = 239/295 (81.02%), Query Frame = 0


Query: 1   MRPP--RGRGGGGGFRGRGDGGRG-GRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRG 60
           MRPP   GRGGGG   GR  GGRG G GR  GGGR G  GR   RG GRG  RGRGG   
Sbjct: 1   MRPPVTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGPPR 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120
           GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTKVEYRV
Sbjct: 61  GGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180
           WNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRS
Sbjct: 121 WNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRS 180

Query: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ-------------- 240
           GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ              
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKT 240

Query: 241 ---------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                    ANCIDSTV AEAVF SEV KL+ +QFKP EQVTLEPFERDHACVVG
Sbjct: 241 GGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVG 295

[Close]

BLAST of CmaCh16G001070 vs. TAIR 10
Match: AT4G25630.1 (fibrillarin 2 )

HSP 1 Score: 376.7 bits (966), Expect = 3.2e-104
Identity = 233/306 (76.14%), Postives = 244/306 (79.74%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGG-RGGRGRGG-GGGRGG---GGGRGMSRGGGRGGGRG--RG 60
           MRPP    GGG   GRG GG  GGRG GG  GGRGG   GGGRG S  GGRG GRG  RG
Sbjct: 1   MRPPLTGSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRG 60

Query: 61  GGRG-------GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQ 120
           G RG       GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQ
Sbjct: 61  GARGGRGPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQ 120

Query: 121 NEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTG 180
           NEDGTK EYRVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G
Sbjct: 121 NEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEG 180

Query: 181 IVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ--- 240
            VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ   
Sbjct: 181 CVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240

Query: 241 --------------------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERD 270
                               ANCIDSTVPAEAVF +EV KL+ +QFKP EQVTLEPFERD
Sbjct: 241 LALNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERD 300

[Close]

BLAST of CmaCh16G001070 vs. TAIR 10
Match: AT5G52470.2 (fibrillarin 1 )

HSP 1 Score: 313.9 bits (803), Expect = 2.6e-85
Identity = 190/226 (84.07%), Postives = 198/226 (87.61%), Query Frame = 0


Query: 1   MRPP--RGRGGGGGFRGRGDGGRG-GRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRG 60
           MRPP   GRGGGG   GR  GGRG G GR  GGGR G  GR   RG GRG  RGRGG   
Sbjct: 1   MRPPVTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGPPR 60

Query: 61  GGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120
           GGMKGGSKV+VEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTKVEYRV
Sbjct: 61  GGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180
           WNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRS
Sbjct: 121 WNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRS 180

Query: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 224
           GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226

[Close]

BLAST of CmaCh16G001070 vs. TAIR 10
Match: AT5G52490.1 (Fibrillarin family protein )

HSP 1 Score: 272.3 bits (695), Expect = 8.6e-73
Identity = 175/294 (59.52%), Postives = 203/294 (69.05%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGRG--RGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGG 60
           M+PP+        RGRG G RGGRG  RGG G    G GRG   G GRG GR +     G
Sbjct: 1   MKPPQ--------RGRGGGVRGGRGLARGGEGSAVRGSGRGGESGRGRGPGRVKSES-DG 60

Query: 61  GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120
           G+KGGSKV+V PHRH G+F+AK K DALVTKN+V GE +YNEKRI VQNED + VEYRVW
Sbjct: 61  GIKGGSKVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVW 120

Query: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180
           NP RSKLA A+  GVD+IWIKPG +VLYLGA+SG TVSHVSD+VGP G VYAVE S   G
Sbjct: 121 NPHRSKLADAITTGVDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICG 180

Query: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ--------------- 240
           + L+NMA+KRTNVIPIIEDARHPAKYRMLVGMVD+IFSDV  P+Q               
Sbjct: 181 KVLMNMAEKRTNVIPIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSG 240

Query: 241 --------ANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVG 270
                   AN IDST+ AE V+  EV KL+ ++ +PTE + L+  E  HACV G
Sbjct: 241 GHFMISIKANSIDSTIAAETVYQMEVEKLQMEELRPTEILHLDSCEEKHACVFG 285

The following BLAST results are available for this feature:

BLAST of CmaCh16G001070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FEF8	2.0e-103	77.63	rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana OX=3702 GN=FIB...	[more]
Q94AH9	4.5e-103	76.14	rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana OX=3702 GN=FIB...	[more]
Q8I1F4	7.5e-90	69.10	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3...	[more]
P22509	4.9e-89	69.39	rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=...	[more]
P35550	6.4e-89	68.69	rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus OX=10090 GN=Fbl PE=1 SV=...	[more]

BLAST of CmaCh16G001070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JA27	1.2e-130	92.12	probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita ma...	[more]
A0A6J1E4P7	2.6e-130	91.78	probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita mo...	[more]
A0A6J1CHH3	3.8e-129	91.47	mediator of RNA polymerase II transcription subunit 36a-like OS=Momordica charan...	[more]
A0A1S3AY25	8.5e-129	91.13	mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=...	[more]
A0A6J1HX74	1.2e-127	90.78	probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita ma...	[more]

BLAST of CmaCh16G001070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576706.1	3.1e-242	85.13	rRNA 2'-O-methyltransferase fibrillarin 2, partial [Cucurbita argyrosperma subsp...	[more]
XP_022984980.1	2.5e-130	92.12	probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxi...	[more]
XP_022922917.1	5.5e-130	91.78	probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita mosc...	[more]
XP_023552409.1	6.0e-129	91.81	mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo sub...	[more]
XP_022141240.1	7.9e-129	91.47	mediator of RNA polymerase II transcription subunit 36a-like [Momordica charanti...	[more]

BLAST of CmaCh16G001070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52470.1	1.4e-104	77.63	fibrillarin 1	[more]
AT4G25630.1	3.2e-104	76.14	fibrillarin 2	[more]
AT5G52470.2	2.6e-85	84.07	fibrillarin 1	[more]
AT5G52490.1	8.6e-73	59.52	Fibrillarin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000692	Fibrillarin	PRINTS	PR00052	FIBRILLARIN	coord: 86..105 score: 64.29 coord: 166..183 score: 72.22 coord: 141..162 score: 79.22 coord: 114..133 score: 75.71 coord: 191..220 score: 70.24
IPR000692	Fibrillarin	SMART	SM01206	Fibrillarin_2	coord: 68..273 e-value: 3.1E-141 score: 485.2
IPR000692	Fibrillarin	PFAM	PF01269	Fibrillarin	coord: 68..225 e-value: 2.7E-76 score: 255.7
None	No IPR available	GENE3D	3.30.200.20	Phosphorylase Kinase; domain 1	coord: 63..118 e-value: 3.7E-29 score: 102.4
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 119..224 e-value: 1.1E-57 score: 196.4 coord: 225..271 e-value: 7.8E-10 score: 40.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 535..550
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 530..560
None	No IPR available	PANTHER	PTHR10335:SF22	FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED	coord: 4..224
None	No IPR available	PANTHER	PTHR10335:SF22	FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED	coord: 223..275
None	No IPR available	PANTHER	PTHR10335	RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN	coord: 223..275
None	No IPR available	PANTHER	PTHR10335	RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN	coord: 4..224
IPR020813	Fibrillarin, conserved site	PROSITE	PS00566	FIBRILLARIN	coord: 166..180
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 66..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G001070.1	CmaCh16G001070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000494	box C/D RNA 3'-end processing
biological_process	GO:1990258	histone glutamine methylation
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0031167	rRNA methylation
biological_process	GO:0051225	spindle assembly
biological_process	GO:0006364	rRNA processing
biological_process	GO:0031122	cytoplasmic microtubule organization
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0000930	gamma-tubulin complex
cellular_component	GO:0005874	microtubule
cellular_component	GO:0000923	equatorial microtubule organizing center
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0031428	box C/D RNP complex
molecular_function	GO:0043015	gamma-tubulin binding
molecular_function	GO:1990259	histone-glutamine methyltransferase activity
molecular_function	GO:0051011	microtubule minus-end binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008649	rRNA methyltransferase activity
molecular_function	GO:0008168	methyltransferase activity