CmaCh16G000740 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAGCATAAAAAAGAAGGAATCTGTGAATGAATGAAGAATCATCACATGGGTTTGCGTGGGATTCCCAAAACTTGCGCTCCAAACCCAAACACTATTAATAAACCCCAATCCCTTCATCTCCACACACCCTTGTTCTTGTTCTTGTTCTTGTTCTTGTGTATCTCAGCATTGGATTGAATAATCGCCAAAGACAGAGAGATGGGTGTTTTGAGGGCTTGTTTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCATCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGTTACTTCTCTCTTCTTCCTGCTTTTCTGCTTATTGCTTCAATACAAAACAAAATCTACTCTTTCTTTTTCTGCTAATAAGACTTGCGATTTCATATGTTGCAGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACTTCCGAAAGCACCAAACGCAGAAGAACACTAACAGCATTCAATTCCGATTATGAATTACATTTTCAAGTGAGCGAGTTGAAAGGGAAGATGGTGTGGTTGTTTCATTCAAATGGGACTTTTTTTTTTCTCTTCTTTTCCTTCTTAAAAATTGGCAGAGATTTCATTTCCAGAAGCTCTGTTATACTTGTATTATATATTCATTATTATTATTATTTTCTTCATTCATCATTATTTTCCTTTGTGTATTCTAAATGGAAGACATATAAGATTTGACGG AGAGCATAAAAAAGAAGGAATCTGTGAATGAATGAAGAATCATCACATGGGTTTGCGTGGGATTCCCAAAACTTGCGCTCCAAACCCAAACACTATTAATAAACCCCAATCCCTTCATCTCCACACACCCTTGTTCTTGTTCTTGTTCTTGTTCTTGTGTATCTCAGCATTGGATTGAATAATCGCCAAAGACAGAGAGATGGGTGTTTTGAGGGCTTGTTTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCATCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGATGCAACTTCCGAAAGCACCAAACGCAGAAGAACACTAACAGCATTCAATTCCGATTATGAATTACATTTTCAAGTGAGCGAGTTGAAAGGGAAGATGGTGTGGTTGTTTCATTCAAATGGGACTTTTTTTTTTCTCTTCTTTTCCTTCTTAAAAATTGGCAGAGATTTCATTTCCAGAAGCTCTGTTATACTTGTATTATATATTCATTATTATTATTATTTTCTTCATTCATCATTATTTTCCTTTGTGTATTCTAAATGGAAGACATATAAGATTTGACGG ATGGGTGTTTTGAGGGCTTGTTTTGGGATCTATGCTGTGATTATTGCTGTGGTTTATGTTGTTATGTTGCCTGTATCTGCTGCAGCGGAACATTCATCTTTTCCAGCTCCAGCCCCAGCCCCCACTAGTGATGGCACCACAATAGACCAAGGCATAGCATATATTCTAATGCTGCTGGCTTTAGCGCTCACTTATATCATCCATTGA MGVLRACFGIYAVIIAVVYVVMLPVSAAAEHSSFPAPAPAPTSDGTTIDQGIAYILMLLALALTYIIH Homology
BLAST of CmaCh16G000740 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 2.5e-11 Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 0
BLAST of CmaCh16G000740 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 3.0e-09 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0
BLAST of CmaCh16G000740 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 3.7e-07 Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0
BLAST of CmaCh16G000740 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 3.7e-07 Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0
BLAST of CmaCh16G000740 vs. ExPASy TrEMBL
Match: A0A6J1HT15 (arabinogalactan peptide 22-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.9e-19 Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CmaCh16G000740 vs. ExPASy TrEMBL
Match: A0A6J1HU96 (arabinogalactan peptide 22-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467520 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.9e-19 Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CmaCh16G000740 vs. ExPASy TrEMBL
Match: A0A6J1G081 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111449506 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 8.2e-18 Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CmaCh16G000740 vs. ExPASy TrEMBL
Match: A0A6J1CHE0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111011447 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15 Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0
BLAST of CmaCh16G000740 vs. ExPASy TrEMBL
Match: A0A0A0L7T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355060 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 8.5e-15 Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0
BLAST of CmaCh16G000740 vs. NCBI nr
Match: KAG6576674.1 (Arabinogalactan protein 22, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 120.9 bits (302), Expect = 4.1e-24 Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of CmaCh16G000740 vs. NCBI nr
Match: XP_022968217.1 (arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 104.4 bits (259), Expect = 4.0e-19 Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CmaCh16G000740 vs. NCBI nr
Match: XP_022968216.1 (arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 104.4 bits (259), Expect = 4.0e-19 Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CmaCh16G000740 vs. NCBI nr
Match: XP_022945187.1 (arabinogalactan peptide 22-like [Cucurbita moschata] >XP_023541894.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo] >KAG7013292.1 Arabinogalactan peptide 22 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17 Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0
BLAST of CmaCh16G000740 vs. NCBI nr
Match: XP_022140891.1 (arabinogalactan peptide 22-like [Momordica charantia]) HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15 Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0
BLAST of CmaCh16G000740 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 ) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12 Identity = 36/64 (56.25%), Postives = 51/64 (79.69%), Query Frame = 0
BLAST of CmaCh16G000740 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 ) HSP 1 Score: 62.0 bits (149), Expect = 2.1e-10 Identity = 39/68 (57.35%), Postives = 51/68 (75.00%), Query Frame = 0
BLAST of CmaCh16G000740 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 ) HSP 1 Score: 55.1 bits (131), Expect = 2.6e-08 Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0
BLAST of CmaCh16G000740 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 ) HSP 1 Score: 55.1 bits (131), Expect = 2.6e-08 Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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