CmaCh16G000320 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G000320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box domain-containing protein
Location	Cma_Chr16: 145135 .. 147199 (-)
RNA-Seq Expression	CmaCh16G000320
Synteny	CmaCh16G000320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGATTGCCAGCGGAAATCTGCTTGAAGATATTCTGTTTGTTGGATTCCCAGAGCCTCGCAACCGCACTTCAAGGTCAGCGTCATGTTACCGCTAAATTAAATTCTTCTAACTTTCTTGAATTTTACGTACAATTGGTCTATTTAGCTATTTGCTGATCAATCCATTAGAATTTAGCTAGAATTTTGCAATCTTTCCTTGGAGGAATTATGAGGTTCTGCTTTTCCGATTGATGTTTAGTTCAATTGACTAGTTTTCATCGGATATTTGACAAATCCAGACAAATTATGATCTTTACTGATTAGTTTCTGATCCAAAAGATCTGATATGGTCTTCAGAAATTTTCTATGGATTTTCTTTCGTGTATGTATTCTGATTTGATGTTTGCGTCTTCTTAACTGGATAAACTGTATGGAGTGCAGCGTATTGCTGGGAGAATTAATATTTATAGATGAACTGTATATAAGTTTTATCATGATTTGTAATTACCTCATGATGCATTCATGCTAATGTGTGTCAAATTTAACGCTGTTCTGTTCATATATGTTGAACTGAAATGGAATGAGGTGAGACTGCAAACCATCACCTGCAAATCGTCACCATGAAGAATTTTTGGTAAACTAAGTGTATATTTCCCCGAGATGCTTGATCATTGCTTGACTTATCCCCCAATTTATGAAGATTCATTGAAGTTAGAAGGCTTGGCAGAGTAAATCATTTTTCAACAAGTTTTCCTTATTCTTCTTAATGTATGTCAACCACCCGGTTGAGTTGAAAGGGTTGACATGGCAGCTTGTTTAGAATTCTACACAAACTCTCACAACTTAAATCACATTCAATATGAATATATATCCATGACATTTGAACTCAATAAACCTATATATATCACATGTTATGAAACTTGAGTAACCTTGGTTAAATCTAACAGACTTTTAGAAAGATGATCAGCAGGGATTTGACACTCCCCAATCTAATGGATTAGATGTCATAGGAAGATTTAACTTGATTGGTAGGAATGATATTTCGAAGTTGCTAATGATCCCCCCTCTTTCTTACTGGTCTGAGTTGAAGGGGAGATTTGCCATCAAAGTTGAAGAGAAAAGTTGCTCTGATGGAATGAAACCTAGATGAAGAAGGAAATCATCTTTCTAACATAGGATAATGAGGAACATCCTTTGCCTTCCTTTGTTGTTACTATATTACCAACAAACTTTTGACACGGAGCCAACTAAAAGTAGAATTGAGTTTCTAAGGGTAATTTTATAATATTAGTGAACTCAGGGACCAAGATGAATAGATAAATAAATAAAATATAGGAATGAAAACTAGATTTACTCTGGAATTTCCTCAATAGTTGATCCCCACCCGCTGTTGATTTATGCTTCAATTGACTTTTAGCTATTAACTCTGCACCCTGCTGCTTGAAGTCTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAATTTATTCAAAGAGAGGTGGGGGGAAGACCATGCTGCATTTTATCACCCAGTTGGTTCGAAGTCATGGAAGGATTCATATGAAGTGCAAGATCGATGTGACCGATTTGGACTGTGAGTCACATTCTTCTTCTTATCACTCAATTTAAGGGGACACTATGTTTTCCTTAATTCTTTGATCCCGTTAAGTCAAATATTGCGTTTCCTGGGTTTATGTTTGACAAGATAAACCATGTTTTTGATAAATACTAAAGCTAGAGTAGAGATTTGAATCATAATTTATGATTACAATATATGTTTATTTGTGCTTCATATGACATAGAAACTGTAACCAGGGGCCTAAGAATAATCCGAGAAGGGAGCGACTACTACCTCATTCACCAAGGTGAAATTCAGAGACACCTGGGTTCAAGAAGACAAAAGAATGGACAGACTAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTGCTATCAGAAGGACTTCTCGATGAAGACAAATCCTGTCGAGGAATTCTGGACAGAATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCAACGGATGCAAAGCGTAGCAGGGCTCTGTGA

mRNA sequence

ATGGAAAGATTGCCAGCGGAAATCTGCTTGAAGATATTCTGTTTGTTGGATTCCCAGAGCCTCGCAACCGCACTTCAAGTCTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAATTTATTCAAAGAGAGGTGGGGGGAAGACCATGCTGCATTTTATCACCCAGTTGGTTCGAAGTCATGGAAGGATTCATATGAAGTGCAAGATCGATGTGACCGATTTGGACTGGGCCTAAGAATAATCCGAGAAGGGAGCGACTACTACCTCATTCACCAAGGTGAAATTCAGAGACACCTGGGTTCAAGAAGACAAAAGAATGGACAGACTAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTGCTATCAGAAGGACTTCTCGATGAAGACAAATCCTGTCGAGGAATTCTGGACAGAATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCAACGGATGCAAAGCGTAGCAGGGCTCTGTGA

Coding sequence (CDS)

ATGGAAAGATTGCCAGCGGAAATCTGCTTGAAGATATTCTGTTTGTTGGATTCCCAGAGCCTCGCAACCGCACTTCAAGTCTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAATTTATTCAAAGAGAGGTGGGGGGAAGACCATGCTGCATTTTATCACCCAGTTGGTTCGAAGTCATGGAAGGATTCATATGAAGTGCAAGATCGATGTGACCGATTTGGACTGGGCCTAAGAATAATCCGAGAAGGGAGCGACTACTACCTCATTCACCAAGGTGAAATTCAGAGACACCTGGGTTCAAGAAGACAAAAGAATGGACAGACTAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTGCTATCAGAAGGACTTCTCGATGAAGACAAATCCTGTCGAGGAATTCTGGACAGAATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCAACGGATGCAAAGCGTAGCAGGGCTCTGTGA

Protein sequence

MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPVGSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL

Homology

[Close]

BLAST of CmaCh16G000320 vs. ExPASy Swiss-Prot
Match: A1C7E4 (Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) OX=344612 GN=sconB PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 4   LPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKE 48
           LP EI  KI C LD+ SL  A QV R+W +LA D+++W  + ++
Sbjct: 201 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRMCEQ 244

[Close]

BLAST of CmaCh16G000320 vs. ExPASy Swiss-Prot
Match: B0XTS1 (Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=sconB PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 4   LPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKE 48
           LP EI  KI C LD+ SL  A QV R+W +LA D+++W  + ++
Sbjct: 199 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRMCEQ 242

[Close]

BLAST of CmaCh16G000320 vs. ExPASy Swiss-Prot
Match: Q4X0A9 (Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=sconB PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 4   LPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKE 48
           LP EI  KI C LD+ SL  A QV R+W +LA D+++W  + ++
Sbjct: 199 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRMCEQ 242

[Close]

BLAST of CmaCh16G000320 vs. ExPASy Swiss-Prot
Match: A2QCU8 (Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=sconB PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 4   LPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKE 48
           LP EI  KI C LD+ SL  A QV R+W +LA D+++W  + ++
Sbjct: 169 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRMCEQ 212

[Close]

BLAST of CmaCh16G000320 vs. ExPASy Swiss-Prot
Match: Q0CY32 (Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=sconB PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 4   LPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKE 48
           LP EI  KI C LD+ SL  A QV R+W +LA D+++W  + ++
Sbjct: 170 LPPEISFKILCYLDTTSLCKAAQVSRRWRALADDDVVWHRMCEQ 213

[Close]

BLAST of CmaCh16G000320 vs. ExPASy TrEMBL
Match: A0A6J1J5J1 (uncharacterized protein LOC111482802 OS=Cucurbita maxima OX=3661 GN=LOC111482802 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 9.5e-89
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV
Sbjct: 6   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 65

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 66  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 125

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL
Sbjct: 126 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168

[Close]

BLAST of CmaCh16G000320 vs. ExPASy TrEMBL
Match: A0A6J1EAN4 (F-box protein SKIP31-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430857 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.0e-87
Identity = 160/163 (98.16%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           MERLPAEICLKIFC LDSQSLATALQVCRKWN LASDNILWSNLFKERWGEDHAAFYHPV
Sbjct: 6   MERLPAEICLKIFCFLDSQSLATALQVCRKWNFLASDNILWSNLFKERWGEDHAAFYHPV 65

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 66  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 125

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRELLSEGLL+EDKSCRGILDRILFFIGDLEVASTDAKRSRAL
Sbjct: 126 KRELLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168

[Close]

BLAST of CmaCh16G000320 vs. ExPASy TrEMBL
Match: A0A0A0LAG9 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G238130 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.4e-85
Identity = 153/163 (93.87%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           ME+LP EIC KIFC LDSQ+LATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHP+
Sbjct: 1   MEKLPTEICFKIFCFLDSQNLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPI 60

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREG+DYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRE LSEGLL+EDKSCRGILDRILFFIGDLEVASTDAKRSR+L
Sbjct: 121 KREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRSL 163

[Close]

BLAST of CmaCh16G000320 vs. ExPASy TrEMBL
Match: A0A1S3C264 (uncharacterized protein LOC103496056 OS=Cucumis melo OX=3656 GN=LOC103496056 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.1e-84
Identity = 153/163 (93.87%), Postives = 158/163 (96.93%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           ME+LP EICLKIFC LDSQ+LATALQVCRKWNSLASDNILWSNLFKERWGED AAFYHP 
Sbjct: 1   MEKLPTEICLKIFCFLDSQNLATALQVCRKWNSLASDNILWSNLFKERWGEDQAAFYHPS 60

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREG+DYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRE LSEGLL+EDKSCRGILDRILFFIGDLEVASTDAKRSR+L
Sbjct: 121 KREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRSL 163

[Close]

BLAST of CmaCh16G000320 vs. ExPASy TrEMBL
Match: A0A6J1CGG1 (uncharacterized protein LOC111011451 OS=Momordica charantia OX=3673 GN=LOC111011451 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 149/163 (91.41%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           MERLPAE+CLKIFCLLDSQ+LATALQVC KWNSLASDN+LWS+LFKERWGEDHAAFYHP+
Sbjct: 6   MERLPAEVCLKIFCLLDSQNLATALQVCWKWNSLASDNLLWSSLFKERWGEDHAAFYHPI 65

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKD+YEVQDRCDRFGLGLRIIREG+DYYLIHQGEIQRHLGSRRQKNGQ +FLPLSS
Sbjct: 66  GSKSWKDAYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQNNFLPLSS 125

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRE LSEG+L+EDKSCRGILDRILFFIGDLEVASTDAKRSR L
Sbjct: 126 KREFLSEGILEEDKSCRGILDRILFFIGDLEVASTDAKRSRVL 168

[Close]

BLAST of CmaCh16G000320 vs. NCBI nr
Match: XP_022984536.1 (uncharacterized protein LOC111482802 [Cucurbita maxima])

HSP 1 Score: 335.9 bits (860), Expect = 2.0e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV
Sbjct: 6   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 65

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 66  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 125

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL
Sbjct: 126 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168

[Close]

BLAST of CmaCh16G000320 vs. NCBI nr
Match: XP_023553429.1 (uncharacterized protein LOC111810852 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.3 bits (856), Expect = 5.7e-88
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV
Sbjct: 6   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 65

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 66  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 125

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRELLSEGLL+EDKSCRGILDRILFFIGDLEVASTDAKRSRAL
Sbjct: 126 KRELLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168

[Close]

BLAST of CmaCh16G000320 vs. NCBI nr
Match: KAG7014689.1 (pof10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.3 bits (856), Expect = 5.7e-88
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV
Sbjct: 6   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 65

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 66  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 125

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRELLSEGLL+EDKSCRGILDRILFFIGDLEVASTDAKRSRAL
Sbjct: 126 KRELLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168

[Close]

BLAST of CmaCh16G000320 vs. NCBI nr
Match: XP_022923080.1 (F-box protein SKIP31-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 330.5 bits (846), Expect = 8.3e-87
Identity = 160/163 (98.16%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           MERLPAEICLKIFC LDSQSLATALQVCRKWN LASDNILWSNLFKERWGEDHAAFYHPV
Sbjct: 6   MERLPAEICLKIFCFLDSQSLATALQVCRKWNFLASDNILWSNLFKERWGEDHAAFYHPV 65

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 66  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 125

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRELLSEGLL+EDKSCRGILDRILFFIGDLEVASTDAKRSRAL
Sbjct: 126 KRELLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 168

[Close]

BLAST of CmaCh16G000320 vs. NCBI nr
Match: XP_004146236.1 (F-box/WD repeat-containing protein pof1 [Cucumis sativus] >XP_011651306.1 F-box/WD repeat-containing protein pof1 [Cucumis sativus] >KGN57647.1 hypothetical protein Csa_009595 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 153/163 (93.87%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MERLPAEICLKIFCLLDSQSLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPV 60
           ME+LP EIC KIFC LDSQ+LATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHP+
Sbjct: 1   MEKLPTEICFKIFCFLDSQNLATALQVCRKWNSLASDNILWSNLFKERWGEDHAAFYHPI 60

Query: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGSDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120
           GSKSWKDSYEVQDRCDRFGLGLRIIREG+DYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS
Sbjct: 61  GSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSS 120

Query: 121 KRELLSEGLLDEDKSCRGILDRILFFIGDLEVASTDAKRSRAL 164
           KRE LSEGLL+EDKSCRGILDRILFFIGDLEVASTDAKRSR+L
Sbjct: 121 KREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRSL 163

The following BLAST results are available for this feature:

BLAST of CmaCh16G000320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1C7E4	1.8e-04	45.45	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Aspergillus clavatus (...	[more]
B0XTS1	1.8e-04	45.45	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Neosartorya fumigata (...	[more]
Q4X0A9	1.8e-04	45.45	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Neosartorya fumigata (...	[more]
A2QCU8	1.8e-04	45.45	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Aspergillus niger (str...	[more]
Q0CY32	1.8e-04	45.45	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Aspergillus terreus (s...	[more]

BLAST of CmaCh16G000320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J5J1	9.5e-89	100.00	uncharacterized protein LOC111482802 OS=Cucurbita maxima OX=3661 GN=LOC111482802...	[more]
A0A6J1EAN4	4.0e-87	98.16	F-box protein SKIP31-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114308...	[more]
A0A0A0LAG9	6.4e-85	93.87	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G238130 PE=4 ...	[more]
A0A1S3C264	7.1e-84	93.87	uncharacterized protein LOC103496056 OS=Cucumis melo OX=3656 GN=LOC103496056 PE=...	[more]
A0A6J1CGG1	3.5e-83	91.41	uncharacterized protein LOC111011451 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of CmaCh16G000320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984536.1	2.0e-88	100.00	uncharacterized protein LOC111482802 [Cucurbita maxima]	[more]
XP_023553429.1	5.7e-88	99.39	uncharacterized protein LOC111810852 [Cucurbita pepo subsp. pepo]	[more]
KAG7014689.1	5.7e-88	99.39	pof10 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022923080.1	8.3e-87	98.16	F-box protein SKIP31-like isoform X1 [Cucurbita moschata]	[more]
XP_004146236.1	1.3e-84	93.87	F-box/WD repeat-containing protein pof1 [Cucumis sativus] >XP_011651306.1 F-box/...	[more]

BLAST of CmaCh16G000320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 4..44 e-value: 2.1E-5 score: 34.0
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 2..45 e-value: 1.1E-13 score: 50.8
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 1..44 score: 13.89554
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..78 e-value: 3.2E-18 score: 67.4
None	No IPR available	PANTHER	PTHR12874:SF19	OS02G0686500 PROTEIN	coord: 1..162
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 1..162
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G000320.1	CmaCh16G000320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding