CmaCh15G013850 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G013850
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description40S ribosomal protein S20
LocationCma_Chr15: 8678411 .. 8680743 (+)
RNA-Seq ExpressionCmaCh15G013850
SyntenyCmaCh15G013850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACTTCCATACTCTATCTTCCTCCTCCCTAAATCCTCCAACTGCAAAACCTAGCAGCGGAAGTCGCCCTTGCTCCGGTAGTCTTCTCCACCACTTCTGTACCTCTCTTCACATGCTGTTTGCTGTACTGTTTTCACATCTGATTTCCGTAGTTTTGGAATTTTTGTTTTCAGGAAGTAAGCAAATATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGGTATCTCCTTCTCTCAGTTTTTGAAGCAAGTTGAATTTTTATTTTTTATGATATTATATTGAAACTCTTATGTTGTTTGTCTCTTGGTTTTGCGTTTTTGTAATGTGTTTCGGAAATATATAGAATCTTATAAATTTTCGCTATGATTGTTGTTGTTGTTGCTGTTTGTAATTCGTTGAATTTTCATTTTTCATGTTCGTCTTGATCAATGGATTGCTTATTATTGAATTGTTCTTATGTTATGTCCTTCGCAATTTATCCACCGAATGAATTTCTGATGGTCGCTTTCAGAGTCTTCCATAATTCAAAGTTAGAGAGTCGAGCCTCTTTGGGGATTTTGACTTTACTGAGCAAGGGTTTTCTCTGCCCTAATTTCTTTGTTTCTATGAATTATTGGAATTTATTGATGTCTTCAGCTTTGTAAATGTTAGCGCAATGCTCACGATTTACTTTCTTTTTCAATCAATAGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGACTGAGGGTTAAGGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTAATTTTGAATCAATGCTTAGCATAAGAATAACTATAATCCTTTGTTTGGATTTCTCCGGCTTCTTGTTAGTCATTGTTACCCTGGATCAATCCCTCAACTGTATTTTCCCCTTATATCTCCGTCTTTTATTTTTCTTTACCTGGGATTAGCATCATGATATTTGGAGCTTCACACCATGTGTTTTAGTCTGTTTTTAAAAGCCTCTCCTGGCACGTGCCTAGCCGATGGTCTTGCACATCGCCTTTGATAGACCGAGGCGCACAAATAAGGTGCCTGTCTTATGTGAAGCCCTCGAGCCCAAAGCTCTGTGTTTTTGGGGCTTTCATTATAGTGCGTCTCACAAAAAAGCAGCATTTATTTTTGTGCCTTGCGCTTAAGCCCTTGAAGGCCATTGCACTATTGCGCCTTCAGCTTTAAAAAACACTTGTTTTAATTTGGTAATTCTATTATCTCTTTATCCTTCCTCCCCATGTACAGCCCTTAGCCTTGTTATTGTTTTCCCTACTTAAACTTTGGATGTGAGTTTTATTGATTCTGCTGCTTGAATATGCCTTCGTTCACGAAACACCGTCGAAACGTATGAACGAGAGATCTGCAAGTTCTTTGGAGTTGTGCTTTGATGGGTTTCACTAAATTTTGAGTTTATTGTTATATGAAGTAAATCTATTGTCATCATATTCCATGTAAAACCCAGTCTTCTGTACTTGGTATCATAATCGACTCTATTTAGTGTAGTCAGTCTGGCATTGTTTATAATTATTCCGTTAATATTGGTTATTTTGGTATATGTTTTCTTGGGTGACTTGATTTGTTTCTCTTAGCCCTCATGTTCATCAGACAAGCCAGAGGGGACCGATAAGATGATCCATTCTGATCATTGGTCAATAATCGTGTACTTCTGTTGCAGGTACTAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATCACATCTATAACCATCGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATGTGTTTTCCAATATTTCCCCAAGTTCTTTACTCCGCTGGTAGTTATTTAGAGGTCTATGTACTCTGTGTGCCTGCCCTGATTCAAATCTCAAATGTTAAGGTTAATGCATTATCATCCATTTTTGTCGTAATTTTGAAGCTCATAACTTGTTTTGAGAGGAAGATTTTGGCCTGCTGTTATGTCGTTGATATCTTTGAATTTTGTACTTTGATCAGAAGTTAAGAATATATTTGCATGAGCTGCATTCTGCGTTCTACCGTAATGTGCTTTTATTTTAAAAATGTGAATGGTCTTTCAAACCTGCCACTCTCATCTAATTGTGTATCACCTCATACGCTAAGAACATCGTTGATTGTGAGAATATGGTATGAATTCTTAGAAATGGAATGTTGATTGTGGT

mRNA sequence

TAACTTCCATACTCTATCTTCCTCCTCCCTAAATCCTCCAACTGCAAAACCTAGCAGCGGAAGTCGCCCTTGCTCCGGAAGTAAGCAAATATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGACTGAGGGTTAAGGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACTAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATCACATCTATAACCATCGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGATTGATGTGTTTTCCAATATTTCCCCAAGTTCTTTACTCCGCTGGTAGTTATTTAGAGGTCTATGTACTCTGTGTGCCTGCCCTGATTCAAATCTCAAATGTTAAGGTTAATGCATTATCATCCATTTTTGTCGTAATTTTGAAGCTCATAACTTGTTTTGAGAGGAAGATTTTGGCCTGCTGTTATGTCGTTGATATCTTTGAATTTTGTACTTTGATCAGAAGTTAAGAATATATTTGCATGAGCTGCATTCTGCGTTCTACCGTAATGTGCTTTTATTTTAAAAATGTGAATGGTCTTTCAAACCTGCCACTCTCATCTAATTGTGTATCACCTCATACGCTAAGAACATCGTTGATTGTGAGAATATGGTATGAATTCTTAGAAATGGAATGTTGATTGTGGT

Coding sequence (CDS)

ATGGCGTATGCAGCGATGAAGCCTACGAAGGCTGGTTTGGAGGATGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCGAAGAACGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAGGACAAGAGACTGAGGGTTAAGGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATCACCACCAGGAAATCTCCCTGCGGTGAAGGTACTAACACATGGGACAGATTTGAACTTCGTGTCCATAAGCGGGTTATCGACCTCTTTAGCTCTGCTGATGTTGTTAAGCAGATCACATCTATAACCATCGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGATTGA

Protein sequence

MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD
Homology
[Close]
BLAST of CmaCh15G013850 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-56
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of CmaCh15G013850 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 3.7e-50
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 0 

Query: 1   MAYA-AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 AD 122
           +D
Sbjct: 126 SD 127

[Close]
BLAST of CmaCh15G013850 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.8e-42
Identity = 83/114 (72.81%), Postives = 102/114 (89.47%), Query Frame = 0 

Query: 8   PTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHIT 67
           P KA + D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L IT
Sbjct: 6   PGKAPV-DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRIT 65

Query: 68  TRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           TRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 66  TRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of CmaCh15G013850 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 5   AMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of CmaCh15G013850 vs. ExPASy TrEMBL
Match: A0A6J1I3A7 (40S ribosomal protein S20-2 OS=Cucurbita maxima OX=3661 GN=LOC111469177 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. ExPASy TrEMBL
Match: A0A6J1H2U8 (40S ribosomal protein S20-2 OS=Cucurbita moschata OX=3662 GN=LOC111459851 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. ExPASy TrEMBL
Match: A0A6J1J8F7 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.4e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. ExPASy TrEMBL
Match: A0A6J1E3W2 (40S ribosomal protein S20-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430590 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.4e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 D 122
           D
Sbjct: 154 D 154

[Close]
BLAST of CmaCh15G013850 vs. ExPASy TrEMBL
Match: A0A6J1E4N9 (40S ribosomal protein S20-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430590 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.4e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 D 122
           D
Sbjct: 154 D 154

[Close]
BLAST of CmaCh15G013850 vs. NCBI nr
Match: XP_022929156.1 (40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958705.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958706.1 40S ribosomal protein S20-2 [Cucurbita moschata] >XP_022970228.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995277.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_022995278.1 40S ribosomal protein S20-2 [Cucurbita maxima] >XP_023532340.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >XP_023551673.1 40S ribosomal protein S20-2 [Cucurbita pepo subsp. pepo] >KAG7035584.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7037622.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. NCBI nr
Match: KAG6605675.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 56  MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 115

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 116 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 175

Query: 121 D 122
           D
Sbjct: 176 D 176

[Close]
BLAST of CmaCh15G013850 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >KAG7014816.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 7.1e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 7.1e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 34  MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 93

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 94  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 153

Query: 121 D 122
           D
Sbjct: 154 D 154

[Close]
BLAST of CmaCh15G013850 vs. NCBI nr
Match: KAG6576788.1 (40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 237.3 bits (604), Expect = 7.1e-59
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKAGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 265 MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 324

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 325 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 384

Query: 121 D 122
           D
Sbjct: 385 D 385

[Close]
BLAST of CmaCh15G013850 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-57
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-57
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 219.2 bits (557), Expect = 1.9e-57
Identity = 112/121 (92.56%), Postives = 113/121 (93.39%), Query Frame = 0 

Query: 1   MAYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTKAGLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of CmaCh15G013850 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of CmaCh15G013850 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 2   AYAAMKPTKAGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP KAGLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:
BLAST of CmaCh15G013850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STY62.6e-5692.5640S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1[more]
P492002.2e-5591.6740S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2[more]
P356863.7e-5083.6140S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2... [more]
P234034.8e-4272.8140S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1[more]
Q3ZBH81.1e-4170.0940S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1[more]
BLAST of CmaCh15G013850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I3A71.2e-59100.0040S ribosomal protein S20-2 OS=Cucurbita maxima OX=3661 GN=LOC111469177 PE=3 SV=... [more]
A0A6J1H2U81.2e-59100.0040S ribosomal protein S20-2 OS=Cucurbita moschata OX=3662 GN=LOC111459851 PE=3 S... [more]
A0A6J1J8F73.4e-5999.1740S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=... [more]
A0A6J1E3W23.4e-5999.1740S ribosomal protein S20-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1E4N93.4e-5999.1740S ribosomal protein S20-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
BLAST of CmaCh15G013850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929156.12.4e-59100.0040S ribosomal protein S20-2 [Cucurbita moschata] >XP_022958705.1 40S ribosomal p... [more]
KAG6605675.12.4e-59100.0040S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022985516.17.1e-5999.1740S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma... [more]
XP_022922646.17.1e-5999.1740S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata][more]
KAG6576788.17.1e-5999.1740S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh15G013850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47370.21.9e-5792.56Ribosomal protein S10p/S20e family protein [more]
AT3G47370.11.9e-5792.56Ribosomal protein S10p/S20e family protein [more]
AT3G47370.31.9e-5792.56Ribosomal protein S10p/S20e family protein [more]
AT3G45030.11.6e-5691.67Ribosomal protein S10p/S20e family protein [more]
AT5G62300.11.6e-5691.67Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 79..93
score: 52.69
coord: 22..35
score: 44.51
coord: 57..72
score: 42.43
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..121
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 20..119
score: 18.389648
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 24..118
e-value: 2.0E-38
score: 143.7
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 24..118
e-value: 6.3E-28
score: 96.9
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 21..119
e-value: 1.7E-40
score: 135.4
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 6..121
e-value: 4.3E-49
score: 167.4
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 22..119
NoneNo IPR availablePANTHERPTHR11700:SF27RIBOSOMAL PROTEIN S10-RELATEDcoord: 1..121
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G013850.1CmaCh15G013850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome