CmaCh15G012650 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G012650
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCox19-like CHCH family protein
LocationCma_Chr15: 8048074 .. 8048429 (+)
RNA-Seq ExpressionCmaCh15G012650
SyntenyCmaCh15G012650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCCTTGTTGATTTCCGCCATGGATGAACCTCGATCTCCGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTATTTGCGAGAATGCGTGATTAGCAAGGTAGTCGTTCCCTCTCTTCAATTTCCCTAAGACTGCATTGTTTATTTCTATGTTCTTGTAATCAATTGGTGCTGTTTATAGAATTCTCGAATTAGGTCGTCTAGCTCTCGGAATAGGATTTGCCGAGTAATTGTTGAAATTTTGTTGCGTTCTCATCGGAGTTCAACTTGTGATTCAGCTATTATGTTTGGATTGAAATAG

mRNA sequence

ATTCCTTGTTGATTTCCGCCATGGATGAACCTCGATCTCCGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTATTTGCGAGAATGCGTGATTAGCAAGAATTCTCGAATTAGGTCGTCTAGCTCTCGGAATAGGATTTGCCGAGTAATTGTTGAAATTTTGTTGCGTTCTCATCGGAGTTCAACTTGTGATTCAGCTATTATGTTTGGATTGAAATAG

Coding sequence (CDS)

ATGGATGAACCTCGATCTCCGCCGGTTTGCGCTCAGGAAGCTCTCGATTTGCTTAATTGCGTTACGGAGTCTCCCTTCGATCAACAGAAATGCTACCGTCTCCTTCATTATTTGCGAGAATGCGTGATTAGCAAGAATTCTCGAATTAGGTCGTCTAGCTCTCGGAATAGGATTTGCCGAGTAATTGTTGAAATTTTGTTGCGTTCTCATCGGAGTTCAACTTGTGATTCAGCTATTATGTTTGGATTGAAATAG

Protein sequence

MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISKNSRIRSSSSRNRICRVIVEILLRSHRSSTCDSAIMFGLK
Homology
BLAST of CmaCh15G012650 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISK 46
          MDEP+  PVCAQEAL+LLNCVTESPFDQ+KCYRLLH LRECV+SK
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSK 45

BLAST of CmaCh15G012650 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-13
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISK 46
          MDEP+  PVCAQEAL+LLNCVTESPFDQ KCYRLLH LRECV+SK
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSK 45

BLAST of CmaCh15G012650 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.4e-11
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISK 46
          MDE R+ PVCAQEALDLLNCVT+SPFDQ+KC +LL+ LRECV++K
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNK 45

BLAST of CmaCh15G012650 vs. ExPASy TrEMBL
Match: A0A2R6PII3 (Cx9C motif-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28794 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.5e-10
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1  MDEPRSP-PVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISKNSRIRSSSSRNR 58
          MD  R+P P+CAQEALDLLNCVTESP DQ+KC RLLH L ECV SK  +  + + +N+
Sbjct: 1  MDGSRTPQPICAQEALDLLNCVTESPLDQEKCLRLLHSLHECVQSKKVKKFTLAEQNK 58

BLAST of CmaCh15G012650 vs. ExPASy TrEMBL
Match: A0A061GD02 (Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISK 46
          M+E  + PVCAQEAL LLNCVT+SPFDQ+KC RLLH LR+CV+ K
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDK 45

BLAST of CmaCh15G012650 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 9.7e-15
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISK 46
          M EPRS PVCAQEALDLLNCVTESPFDQQKCYRLLH LRECVISK
Sbjct: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVISK 57

BLAST of CmaCh15G012650 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISK 46
          MDEP+  PVCAQEAL+LLNCVTESPFDQ+KCYRLLH LRECV+SK
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSK 45

BLAST of CmaCh15G012650 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-13
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISK 46
          MDEP+  PVCAQEAL+LLNCVTESPFDQ KCYRLLH LRECV+SK
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSK 45

BLAST of CmaCh15G012650 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISKNSRIRSSSSRNRICR 60
          MD+ ++ PVCAQEALDLLNCVT+SPFDQ+KCYRLLH LRECV+SK  +  S +   R  R
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKR 60

BLAST of CmaCh15G012650 vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 0

Query: 1  MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISK 46
          MDE R+ PVCAQEALDLLNCVT+SPFDQ+KC +LL+ LRECV++K
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNK 45

BLAST of CmaCh15G012650 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-12
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1   MDEPRSPPVCAQEALDLLNCVTESPFDQQKCYRLLHYLRECVISKNSRIRSSSSRN 57
           M++  + P+C QEAL LLNCV ESPFDQ+KC R L  LRECV+SK  +  S  S++
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQS71.2e-1384.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1[more]
A0A5D3C4E22.0e-1384.44Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A7J7CJI75.4e-1175.56Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ... [more]
A0A2R6PII34.5e-1062.07Cx9C motif-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 G... [more]
A0A061GD021.0e-0971.11Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
KAG7017003.19.7e-1593.33hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN50036.12.4e-1384.44hypothetical protein Csa_000619 [Cucumis sativus][more]
KAA0042698.14.1e-1384.44Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like... [more]
KAG6606053.11.2e-1265.00hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF5734209.11.1e-1075.56hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
AT4G23760.16.3e-1255.36Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 5..63
e-value: 1.9E-5
score: 26.6
NoneNo IPR availablePANTHERPTHR37750COX19-LIKE CHCH FAMILY PROTEINcoord: 1..54
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 8..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G012650.1CmaCh15G012650.1mRNA