CmaCh15G012330 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G012330
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 7810983 .. 7812080 (-)
RNA-Seq ExpressionCmaCh15G012330
SyntenyCmaCh15G012330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCCTGGTAAGCGATAATACGACATCGTTTCCACAAGTACCGAGACCCTCTACACCCCAGTACGACGTCGTACGCAGGACAATCCAATGCCAAAACTGCGAAGGGTAACATGGAGTTGGGGCATAGCGAGGGAAAGCAACCTCACAATTGCTCGAGTGTAAAGCTTTCTTTCTGCAAATTGGCAGTCCATTTCGCCATTAATCAATCCAAGAACCAATACCCATAATTCACCTTTCTTCCCTTTTCGTTTTCTATATTTGTCCCATTTCATTCCCTTTTCTTTCCCCTCTTCGTCTTCTTCGTCTTTCCCTGTTTTCCCCCTCTTTTTCATAGCTGTTTTCACTGTTCTTGTACGAGTAATGGGTCCATCTCTGTTCCCTTCATTTGCTTATTGCGGATTCAAGCAGACCCAGGTGCCCCATTTCTCTGTTTCTTTCCATTTTTTGCTATTTACTTTGCTCTGCCTGTGTATTAGTTCTTCACTTGTCACTAACACTGAGTGGAAAAAGTTCCTTTATCTTTCATTTTTGTAGCCCCATCAAACCCACTTTTTATTTTCCTTTCCTTTCTCTGGAAACAATCAGAAACGGTCCCTGCTCTTATCTTGGCTTACTTGTTAGTGCTATTTTGCTTGTTGCTAACATTAAGATGGCCTACCACTTCAGTTTTCTGTGGGGAAATGATATGAACACTTGAGAAAACTTGGCCAATGGCCAAACAATTTCACTCAAATACTCGAAACATAGCTTGTTAGCTTTCTTACTTTGTTTCATTTGAAAAAATGTGTATAGGGGAAGACAATATCTTAGGAACCATTTGTTTATTTGTATAAGGCGATTTTAACTGGAGCAGGGTTTCTTGATTCTGTTCTGATGTATCCTTAATTCTAGTTCGCATTGTGTTTTATTTACTGATGGAAAAGTGTAGATCAAGATAATGATTCTTTTTTTGTTCTTTTTTGATATTTGGGAAGACAATCTGCTTTGTGCTCTTTAGTAAAAGTGGTTCCATTTTGGGTACTCCTTTTTGCTTTTATCACTGAGAACCATGGTTAATCATTCACCATGCCGACAGGGTAATCAACAAGATTAG

mRNA sequence

ATGGCAGCCCTGTCCATTTCGCCATTAATCAATCCAAGAACCAATACCCATAATTCACCTTTCTTCCCTTTTCGTTTTCTATATTTGTCCCATTTCATTCCCTTTTCTTTCCCCTCTTCGTCTTCTTCGTCTTTCCCTGTTTTCCCCCTCTTTTTCATAGCTGTTTTCACTGTTCTTGTACGAGTAATGGGTCCATCTCTGTTCCCTTCATTTGCTTATTGCGGATTCAAGCAGACCCAGGGTAATCAACAAGATTAG

Coding sequence (CDS)

ATGGCAGCCCTGTCCATTTCGCCATTAATCAATCCAAGAACCAATACCCATAATTCACCTTTCTTCCCTTTTCGTTTTCTATATTTGTCCCATTTCATTCCCTTTTCTTTCCCCTCTTCGTCTTCTTCGTCTTTCCCTGTTTTCCCCCTCTTTTTCATAGCTGTTTTCACTGTTCTTGTACGAGTAATGGGTCCATCTCTGTTCCCTTCATTTGCTTATTGCGGATTCAAGCAGACCCAGGGTAATCAACAAGATTAG

Protein sequence

MAALSISPLINPRTNTHNSPFFPFRFLYLSHFIPFSFPSSSSSSFPVFPLFFIAVFTVLVRVMGPSLFPSFAYCGFKQTQGNQQD
Homology
[Close]
BLAST of CmaCh15G012330 vs. NCBI nr
Match: KAG6579511.1 (hypothetical protein SDJN03_23959, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-08
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 54 AVFTVLVRVMGPSLFPSFAYCGFKQTQGNQQD 86
          AVFTVLVR MGPSLFPSFAYCGFKQTQGNQQD
Sbjct: 37 AVFTVLVRAMGPSLFPSFAYCGFKQTQGNQQD 68

[Close]
BLAST of CmaCh15G012330 vs. NCBI nr
Match: KAG7016972.1 (hypothetical protein SDJN02_22083, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 49 PLFFI-------AVFTVLVRVMGPSLFPSFAYCGFKQTQ 81
          PL F+       AVFTVLVR MGPSLFPSFAYCGFKQTQ
Sbjct: 7  PLVFVSLINGSPAVFTVLVRAMGPSLFPSFAYCGFKQTQ 45

The following BLAST results are available for this feature:
BLAST of CmaCh15G012330 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G012330 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G012330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579511.14.0e-0896.88hypothetical protein SDJN03_23959, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7016972.11.6e-0474.36hypothetical protein SDJN02_22083, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh15G012330 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G012330.1CmaCh15G012330.1mRNA