CmaCh15G010750 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G010750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pectin lyase superfamily protein
Location	Cma_Chr15: 6837491 .. 6838126 (-)
RNA-Seq Expression	CmaCh15G010750
Synteny	CmaCh15G010750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTTCTCCCATCTTATGGGAGGGGAAGAGATGCTCCTAGTGGACGGTACAACAGCCTCATCTTTGGAACTAATCTTACGGATGTGATTATCACAGGTGATTATTTTTGTTTCTTTACCTTTTAACATTTCTTTTCTTAAAAAAAAATAGTTAGCAAAATTATAGAGAAATAAAATTAGATTGTTGACATGGTATAGGTAACAACGTCACCATCGACGGGCAGGGGTCTTATTGGTGGGATAAGTTTCACAAAGGGGAGCTCAACGTAACACGATCATACATGATCAAGATCATGCACTCTGATCAAATTCAAATCTTAGATCTCACTTTGATCAACTCTCCTTCTTTGTTCGTCCATCCAGTCTATAGCAGGTTTGACTCTTTCTCTATAGCAGGTTTGACTCTTTCACTTCCTGTTAAAACTTGAATAGTATTTGATTCCCAAGTTTTTACTCTAAATTTTGAATTATAATATATATATATATATATATATATATATATATATATATATATTTTAATTTGGTTGGGTGAAAAGTAGGAATGTGATTATTCAAGGGCTCACCATCTTGGCTCCGGTCACGGTACCCAACACCGACGAAATAGATCCTGGTTCCCTACTTCTTCACCTTTAA

mRNA sequence

ATGAAAGTTCTCCCATCTTATGGGAGGGGAAGAGATGCTCCTAGTGGACGGTACAACAGCCTCATCTTTGGAACTAATCTTACGGATGTGATTATCACAGGTAACAACGTCACCATCGACGGGCAGGGGTCTTATTGGTGGGATAAGTTTCACAAAGGGGAGCTCAACGTAACACGATCATACATGATCAAGATCATGCACTCTGATCAAATTCAAATCTTAGATCTCACTTTGATCAACTCTCCTTCTTTGTTCGTCCATCCAGTCTATAGCAGGAATGTGATTATTCAAGGGCTCACCATCTTGGCTCCGGTCACGGTACCCAACACCGACGAAATAGATCCTGGTTCCCTACTTCTTCACCTTTAA

Coding sequence (CDS)

ATGAAAGTTCTCCCATCTTATGGGAGGGGAAGAGATGCTCCTAGTGGACGGTACAACAGCCTCATCTTTGGAACTAATCTTACGGATGTGATTATCACAGGTAACAACGTCACCATCGACGGGCAGGGGTCTTATTGGTGGGATAAGTTTCACAAAGGGGAGCTCAACGTAACACGATCATACATGATCAAGATCATGCACTCTGATCAAATTCAAATCTTAGATCTCACTTTGATCAACTCTCCTTCTTTGTTCGTCCATCCAGTCTATAGCAGGAATGTGATTATTCAAGGGCTCACCATCTTGGCTCCGGTCACGGTACCCAACACCGACGAAATAGATCCTGGTTCCCTACTTCTTCACCTTTAA

Protein sequence

MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRSYMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGSLLLHL

Homology

[Close]

BLAST of CmaCh15G010750 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-42
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           +K LPSYGRGRDA +GRY SLIFGTNLTDVIITG+N TIDGQG  WW +FH G+L  TR 
Sbjct: 140 IKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRP 199

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           Y+I++M+S  IQI +LTL+NSPS  VHPVYSRN++IQG+TILAPV  PNTD I+P S
Sbjct: 200 YLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDS 256

[Close]

BLAST of CmaCh15G010750 vs. ExPASy Swiss-Prot
Match: Q9LW07 (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-07
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 3   VLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRSYM 62
           V PS G  +    G  +  I  T++  ++I G+   I+GQGS WW+  HKG    +R   
Sbjct: 92  VAPSKGNWK----GDKDQWILFTDIEGLVIEGDG-EINGQGSSWWE--HKG----SRPTA 151

Query: 63  IKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           +K    + +++  LT ++SP   +H      V I  L I AP + PNTD ID G+
Sbjct: 152 LKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGA 195

[Close]

BLAST of CmaCh15G010750 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 39/94 (41.49%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 27  LTDVIITGNNVTIDGQGSYWWD---KFHKGEL---NVTRSYMIKIMHSDQIQILDLTLIN 86
           LTD  + G  V IDGQG  WW    K   G     +  R   IKI +S  + + +LTL+N
Sbjct: 145 LTDFNLMGTGV-IDGQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMN 204

Query: 87  SPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEID 115
           SP   +       V IQGL I AP   PNTD ID
Sbjct: 205 SPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGID 237

[Close]

BLAST of CmaCh15G010750 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.3e-06
Identity = 40/96 (41.67%), Postives = 47/96 (48.96%), Query Frame = 0


Query: 27  LTDVIITGNNVTIDGQGSYWWDKFHKGELNVT------RSYMIKIMHSDQIQILDLTLIN 86
           LTD  + G  V IDGQG+ WW    K     T      R   IKI  S  + + +LTL N
Sbjct: 146 LTDFNLMGTGV-IDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTN 205

Query: 87  SPSLFVHPVYSR--NVIIQGLTILAPVTVPNTDEID 115
           SP    H V+     V IQG+ I AP   PNTD ID
Sbjct: 206 SPEF--HLVFGECDGVKIQGIKIKAPRDSPNTDGID 238

[Close]

BLAST of CmaCh15G010750 vs. ExPASy TrEMBL
Match: A0A6J1E2H4 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430244 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           +KVLPSYGRGRDAP GRY+SLIFGTNLTDV+ITGNN TIDGQGSYWWDKFHKGELNVTR 
Sbjct: 132 VKVLPSYGRGRDAPGGRYSSLIFGTNLTDVVITGNNGTIDGQGSYWWDKFHKGELNVTRP 191

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           YMI+IM+SDQIQI DLTLINSPS FVHPVYSRNVIIQGLTILAPVTVPNTD IDP S
Sbjct: 192 YMIEIMYSDQIQISDLTLINSPSWFVHPVYSRNVIIQGLTILAPVTVPNTDGIDPDS 248

[Close]

BLAST of CmaCh15G010750 vs. ExPASy TrEMBL
Match: A0A6J1IBV8 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111471546 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.5e-51
Identity = 100/115 (86.96%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 3   VLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRSYM 62
           VLPSYGRGRDAP GRY+SLIFGTNLTDV+ITGNN T+DGQGSYWW+KFHKGEL VTR YM
Sbjct: 134 VLPSYGRGRDAPGGRYSSLIFGTNLTDVVITGNNGTMDGQGSYWWEKFHKGELKVTRPYM 193

Query: 63  IKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           I+IM+SDQIQI DLTLINSPS FVHP+YSRNVIIQGLTILAPVTVPNTD IDP S
Sbjct: 194 IEIMYSDQIQISDLTLINSPSWFVHPIYSRNVIIQGLTILAPVTVPNTDGIDPDS 248

[Close]

BLAST of CmaCh15G010750 vs. ExPASy TrEMBL
Match: A0A6J1E308 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430372 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.0e-50
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           + VLPSYGRGRDAP GRY+SLIFGTNLTDV+ITGNN T+DGQGSYWW+KFHKGEL VTR 
Sbjct: 132 VNVLPSYGRGRDAPGGRYSSLIFGTNLTDVVITGNNGTMDGQGSYWWEKFHKGELKVTRP 191

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           YMI+IM+SDQIQI +LTLINSPS FVHP+YS NVIIQGLTILAP+TVPNTD IDP S
Sbjct: 192 YMIEIMYSDQIQISNLTLINSPSWFVHPIYSSNVIIQGLTILAPITVPNTDGIDPDS 248

[Close]

BLAST of CmaCh15G010750 vs. ExPASy TrEMBL
Match: A0A6J1K3G8 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111491343 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.2e-49
Identity = 95/119 (79.83%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           ++VLPSYGRGRDAP GR++SLIFGTNLTDV+ITGNN TIDGQGSYWWDKFHK E NVTR 
Sbjct: 132 VEVLPSYGRGRDAPGGRFSSLIFGTNLTDVVITGNNGTIDGQGSYWWDKFHKNEFNVTRP 191

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGSLL 120
           YMI+IM+SDQIQI +LTL+NSPS FVHP+YSRNVIIQGLTILAP+  PNTD IDP S +
Sbjct: 192 YMIEIMYSDQIQISNLTLVNSPSWFVHPIYSRNVIIQGLTILAPIDSPNTDGIDPDSCI 250

[Close]

BLAST of CmaCh15G010750 vs. ExPASy TrEMBL
Match: A0A6J1I677 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111471479 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 96/117 (82.05%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           ++VLPSYGRGRDAP GRYNSLIFGTNLTDV+ITGNN TIDGQGS WW+KF KGEL  TR 
Sbjct: 166 VEVLPSYGRGRDAPGGRYNSLIFGTNLTDVVITGNNGTIDGQGSSWWEKFKKGELKETRP 225

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           Y+I+IM+SDQ+QI DLTLINSPS FVHP+YSRNVIIQGLTILAPVTVPNTD I+P S
Sbjct: 226 YLIEIMYSDQVQISDLTLINSPSWFVHPIYSRNVIIQGLTILAPVTVPNTDGINPDS 282

[Close]

BLAST of CmaCh15G010750 vs. NCBI nr
Match: XP_023550018.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.8 bits (556), Expect = 2.6e-53
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           +KVLPSYGRGRDAP GRY+SLIFGTNLTDV+ITGNN TIDGQGSYWWDKFHKGELNVTR 
Sbjct: 133 VKVLPSYGRGRDAPGGRYSSLIFGTNLTDVVITGNNGTIDGQGSYWWDKFHKGELNVTRP 192

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           YMI+IM+SDQIQI DLTLINSPS FVHPVYSRNVIIQGLTILAPVTVPNTD IDP S
Sbjct: 193 YMIEIMYSDQIQISDLTLINSPSWFVHPVYSRNVIIQGLTILAPVTVPNTDGIDPDS 249

[Close]

BLAST of CmaCh15G010750 vs. NCBI nr
Match: XP_022922177.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 218.8 bits (556), Expect = 2.6e-53
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           +KVLPSYGRGRDAP GRY+SLIFGTNLTDV+ITGNN TIDGQGSYWWDKFHKGELNVTR 
Sbjct: 132 VKVLPSYGRGRDAPGGRYSSLIFGTNLTDVVITGNNGTIDGQGSYWWDKFHKGELNVTRP 191

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           YMI+IM+SDQIQI DLTLINSPS FVHPVYSRNVIIQGLTILAPVTVPNTD IDP S
Sbjct: 192 YMIEIMYSDQIQISDLTLINSPSWFVHPVYSRNVIIQGLTILAPVTVPNTDGIDPDS 248

[Close]

BLAST of CmaCh15G010750 vs. NCBI nr
Match: XP_022973038.1 (probable polygalacturonase [Cucurbita maxima])

HSP 1 Score: 210.7 bits (535), Expect = 7.1e-51
Identity = 100/115 (86.96%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 3   VLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRSYM 62
           VLPSYGRGRDAP GRY+SLIFGTNLTDV+ITGNN T+DGQGSYWW+KFHKGEL VTR YM
Sbjct: 134 VLPSYGRGRDAPGGRYSSLIFGTNLTDVVITGNNGTMDGQGSYWWEKFHKGELKVTRPYM 193

Query: 63  IKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           I+IM+SDQIQI DLTLINSPS FVHP+YSRNVIIQGLTILAPVTVPNTD IDP S
Sbjct: 194 IEIMYSDQIQISDLTLINSPSWFVHPIYSRNVIIQGLTILAPVTVPNTDGIDPDS 248

[Close]

BLAST of CmaCh15G010750 vs. NCBI nr
Match: XP_023550017.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 6.0e-50
Identity = 99/117 (84.62%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           + VLPSYGRGRDAP GRY SLIFGTNLTDV+ITGNN T+DGQGSYWW+KFHKGEL VTR 
Sbjct: 132 VNVLPSYGRGRDAPGGRYCSLIFGTNLTDVVITGNNGTMDGQGSYWWEKFHKGELKVTRP 191

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           YMI+IM+SDQIQI DLTLINSPS FVHP+YS NVIIQGLTILAPVTVPNTD IDP S
Sbjct: 192 YMIEIMYSDQIQISDLTLINSPSWFVHPIYSSNVIIQGLTILAPVTVPNTDGIDPDS 248

[Close]

BLAST of CmaCh15G010750 vs. NCBI nr
Match: XP_022922357.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-49
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           + VLPSYGRGRDAP GRY+SLIFGTNLTDV+ITGNN T+DGQGSYWW+KFHKGEL VTR 
Sbjct: 132 VNVLPSYGRGRDAPGGRYSSLIFGTNLTDVVITGNNGTMDGQGSYWWEKFHKGELKVTRP 191

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           YMI+IM+SDQIQI +LTLINSPS FVHP+YS NVIIQGLTILAP+TVPNTD IDP S
Sbjct: 192 YMIEIMYSDQIQISNLTLINSPSWFVHPIYSSNVIIQGLTILAPITVPNTDGIDPDS 248

[Close]

BLAST of CmaCh15G010750 vs. TAIR 10
Match: AT3G61490.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-42
Identity = 78/117 (66.67%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           +K LPSYGRGRDA  GR+ SLIFGTNL+DVIITGNN TIDGQGS+WW KFH G+L  TR 
Sbjct: 122 LKALPSYGRGRDAAGGRFASLIFGTNLSDVIITGNNGTIDGQGSFWWQKFHGGKLKYTRP 181

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           Y+I++M SD IQI +LT ++SPS  +HPVYS N+I++G+TI+APV  PNTD I+P S
Sbjct: 182 YLIELMFSDTIQISNLTFLDSPSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDS 238

[Close]

BLAST of CmaCh15G010750 vs. TAIR 10
Match: AT3G61490.2 (Pectin lyase-like superfamily protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-42
Identity = 78/117 (66.67%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           +K LPSYGRGRDA  GR+ SLIFGTNL+DVIITGNN TIDGQGS+WW KFH G+L  TR 
Sbjct: 122 LKALPSYGRGRDAAGGRFASLIFGTNLSDVIITGNNGTIDGQGSFWWQKFHGGKLKYTRP 181

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           Y+I++M SD IQI +LT ++SPS  +HPVYS N+I++G+TI+APV  PNTD I+P S
Sbjct: 182 YLIELMFSDTIQISNLTFLDSPSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDS 238

[Close]

BLAST of CmaCh15G010750 vs. TAIR 10
Match: AT3G61490.3 (Pectin lyase-like superfamily protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-42
Identity = 78/117 (66.67%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MKVLPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRS 60
           +K LPSYGRGRDA  GR+ SLIFGTNL+DVIITGNN TIDGQGS+WW KFH G+L  TR 
Sbjct: 122 LKALPSYGRGRDAAGGRFASLIFGTNLSDVIITGNNGTIDGQGSFWWQKFHGGKLKYTRP 181

Query: 61  YMIKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           Y+I++M SD IQI +LT ++SPS  +HPVYS N+I++G+TI+APV  PNTD I+P S
Sbjct: 182 YLIELMFSDTIQISNLTFLDSPSWNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDS 238

[Close]

BLAST of CmaCh15G010750 vs. TAIR 10
Match: AT4G23500.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-42
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 4   LPSYGRGRDAPSGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRSYMI 63
           LPSYGRGRD   GR+ SL+FG+NLTDV+ITG N TIDGQG  WW KF +GEL  TR Y+I
Sbjct: 148 LPSYGRGRDTDGGRFISLLFGSNLTDVVITGENGTIDGQGEPWWGKFKRGELKYTRPYLI 207

Query: 64  KIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           +IMHSD IQI +LT +NSPS  +HPVYS N+ IQGLTILAPVTVPNTD I+P S
Sbjct: 208 EIMHSDGIQISNLTFLNSPSWHIHPVYSSNIYIQGLTILAPVTVPNTDGINPDS 261

[Close]

BLAST of CmaCh15G010750 vs. TAIR 10
Match: AT3G48950.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-38
Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 4   LPSYGRGRDAP-SGRYNSLIFGTNLTDVIITGNNVTIDGQGSYWWDKFHKGELNVTRSYM 63
           LPSYG+GRD   +GR+NSLI GTNLTDV+ITGNN TI+GQG YWWDKF K +  +TR Y+
Sbjct: 125 LPSYGKGRDGTGTGRFNSLISGTNLTDVVITGNNGTINGQGQYWWDKFKKKQFKITRPYL 184

Query: 64  IKIMHSDQIQILDLTLINSPSLFVHPVYSRNVIIQGLTILAPVTVPNTDEIDPGS 118
           I+I+ S  IQI ++TLI+SPS  +HPVY  +VI++ +T+LAPVTVPNTD I+P S
Sbjct: 185 IEILFSKNIQISNITLIDSPSWNIHPVYCNSVIVKSVTVLAPVTVPNTDGINPDS 239

The following BLAST results are available for this feature:

BLAST of CmaCh15G010750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	1.3e-42	70.09	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
Q9LW07	3.0e-07	33.91	Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g1572...	[more]
Q7M1E7	1.1e-06	41.49	Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]
Q9FY19	7.3e-06	41.67	Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1	[more]

BLAST of CmaCh15G010750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2H4	1.3e-53	89.74	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430244 PE=3 SV...	[more]
A0A6J1IBV8	3.5e-51	86.96	probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111471546 PE=3 SV=1	[more]
A0A6J1E308	5.0e-50	82.91	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430372 PE=3 SV...	[more]
A0A6J1K3G8	4.2e-49	79.83	probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111491343 PE=3 SV=1	[more]
A0A6J1I677	1.2e-48	82.05	probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111471479 PE=3 SV=1	[more]

BLAST of CmaCh15G010750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550018.1	2.6e-53	89.74	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]
XP_022922177.1	2.6e-53	89.74	probable polygalacturonase [Cucurbita moschata]	[more]
XP_022973038.1	7.1e-51	86.96	probable polygalacturonase [Cucurbita maxima]	[more]
XP_023550017.1	6.0e-50	84.62	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]
XP_022922357.1	1.0e-49	82.91	probable polygalacturonase [Cucurbita moschata]	[more]

BLAST of CmaCh15G010750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61490.1	1.3e-42	66.67	Pectin lyase-like superfamily protein	[more]
AT3G61490.2	1.3e-42	66.67	Pectin lyase-like superfamily protein	[more]
AT3G61490.3	1.3e-42	66.67	Pectin lyase-like superfamily protein	[more]
AT4G23500.1	1.7e-42	70.18	Pectin lyase-like superfamily protein	[more]
AT3G48950.1	1.9e-38	63.48	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 19..117 e-value: 2.3E-13 score: 49.9
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..118 e-value: 4.7E-28 score: 100.1
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 3..117
None	No IPR available	PANTHER	PTHR31339:SF71	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN	coord: 3..117
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 14..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G010750.1	CmaCh15G010750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity