CmaCh15G010210 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G010210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 6316410 .. 6317486 (+)
RNA-Seq ExpressionCmaCh15G010210
SyntenyCmaCh15G010210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGGCTAATTAATTATTTATTAAAATTTTAGGTATATTTTGAATTAAAATTATTAGATAAAATAAAAATAATAATTGATATTTTAAAATAGGATTGAATTTTCCTCTTATGACTTTTTCTTAAAAATTTTAATGATGATAAATTTTTGTTGGTCTTCTCCAGCGAGGCATCAGCGACCTTGTGATTGGTTGCACAAGTCGGACCTAAAACCCTAAAATGGAACCAAATGCATCTGAATTTTTCTCTTAAATTATTGCTTTTTTGGGCGGAAAAAAAACAGAAAAGAAAAGAAAATAAAAATAATTTAGTTTTTAGCATTTCAAGTCCAGCCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTGCAATCCCTTCAATTTTCCCAATCCAGGTATTGATTTCTCTCCCATCTTCGAAAATCCCCTTGAGTTTATGTTCATTGGGTTTCATTTTGCTTGCTGATTTTGTTTTTTTTTTTTTGTTTACCTTTTGATCTGTGCATTTTCTATTTGATTTTCCCCGATTCATCCATTTTCTGTTTTGTATCGTCATTAGGATTCAGTTCTTGATGTTTTTTGTATTGCCTTTTCAGTATCAGTGTTTTTGTTTATTTGTTTCATTTTTTGAAGTGGAACGAGTATGTTATAGTGGTCTGTGTAGCATCGCATTTAAGCTTATTTCGATCCTGTGAAAATTTGTTGTCATTTTTGTTTCTTATGGTTTGAACCGGAAGATATCGATATCAACATAGACGGTTGGTCCATATGACTTTAAGGGGCTGGGTTCTCGATAGATCACCTGCAGTTCAATTAGTTTTATTAGTTTCTTTTGGTTATGCTGTTGAGATCTGGGTTTTTGCTCTTTGTTCCTGGGTTTTGCGATTGCTATAGCTAGGTTTCGTTTTTCCATTATTATTTCTGATTGAGATTTTTGGGATGGGATGAATATTTTCTTAGTAATGAATTTAGTTTCCTCAATTAAGAATCTGTTGA

mRNA sequence

ATGGTCCAGCCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTGCAATCCCTTCAATTTTCCCAATCCAGTGGAACGAGTATGTTATAGTGTTTCCTCAATTAAGAATCTGTTGA

Coding sequence (CDS)

ATGGTCCAGCCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTGCAATCCCTTCAATTTTCCCAATCCAGTGGAACGAGTATGTTATAGTGTTTCCTCAATTAAGAATCTGTTGA

Protein sequence

MVQPLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLAIPSIFPIQWNEYVIVFPQLRIC
Homology
[Close]
BLAST of CmaCh15G010210 vs. NCBI nr
Match: KAG7016818.1 (Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 4  PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLAIPSIFPIQ 51
          PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFL IPSIFPIQ
Sbjct: 1  PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQ 47

[Close]
BLAST of CmaCh15G010210 vs. NCBI nr
Match: KAG6579316.1 (Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 4   PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLAIPSIFPIQ 51
           PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFL IPSIFPIQ
Sbjct: 354 PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQ 400

The following BLAST results are available for this feature:
BLAST of CmaCh15G010210 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G010210 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G010210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016818.11.1e-1597.87Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6579316.11.1e-1597.87Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh15G010210 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G010210.1CmaCh15G010210.1mRNA