CmaCh15G009860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G009860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CLAVATA3/ESR (CLE)-related protein 27
Location	Cma_Chr15: 5659130 .. 5659700 (-)
RNA-Seq Expression	CmaCh15G009860
Synteny	CmaCh15G009860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGGCGGCGCCATTCCACCTCGGCGGCGGCGGCGTTTTCTCCCTTCTTTCTTCCTAATGGTTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGGCCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGACGAAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTAGTACAATAATTCTGTACTTTTTTTTTCTTTTTTTTCTCTCTGGTTGGATTTTTGTGCCTCTCATTTGCTTTGTGATTGGGAAACCGGGGTATTGCGGAGCTTTTAATTTAGAGTGATATATAAATTAAAGGGGAAAAAATGGAGTGTTCATGATCTGTACAGAAAAAGTAGAAGCTCTGAAATACCACTTTTGGATAACTTTGGAAGAGAAGAAAGCAGAGGAAGAATGGCAGAGATGTGATTTGCAATCAGAAAATCCTGTTGTTTTTTTTAGCAGATTAATATAA

mRNA sequence

ATGAGCGGCGGCGCCATTCCACCTCGGCGGCGGCGGCGTTTTCTCCCTTCTTTCTTCCTAATGGTTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGGCCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGACGAAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTACAGATTAATATAA

Coding sequence (CDS)

ATGAGCGGCGGCGCCATTCCACCTCGGCGGCGGCGGCGTTTTCTCCCTTCTTTCTTCCTAATGGTTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGGCCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGACGAAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTACAGATTAATATAA

Protein sequence

MSGGAIPPRRRRRFLPSFFLMVFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHNYRLI

Homology

[Close]

BLAST of CmaCh15G009860 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.3e-04
Identity = 30/93 (32.26%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 9  RRRRRFLPSFFLMVFFI-WVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTY 68
          R  R  L +  LMV  + +++     +      R FP      ++ + G   +E L++ Y
Sbjct: 5  REWRSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFP------ETPASGKRQEEDLMKKY 64

Query: 69 FNG------RSFGSRGFQEKKRTVPSCPDPLHN 95
          F         SF  +G  E KR VPSCPDPLHN
Sbjct: 65 FGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of CmaCh15G009860 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.8e-16
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 8  PRRRRRFLPSFFLMVFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTY 67
          P RRRR L  FF+++FFIWVV       A+A+ARP   ++ P+    G  GSKEK    Y
Sbjct: 8  PSRRRRLLSYFFIILFFIWVVV--GNQAASAMARPLEESENPDM---GAVGSKEK----Y 67

Query: 68 FNGRSFGSRGFQEKKRTVPSCPDPLHN 95
          FNGRS GSR F+E KRTVPSCPDPLHN
Sbjct: 68 FNGRSLGSREFEENKRTVPSCPDPLHN 85

[Close]

BLAST of CmaCh15G009860 vs. ExPASy TrEMBL
Match: A0A6A1W705 (CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G018956 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 22 VFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS-----KEKLLRTYFNGRSFG-- 81
          V  IWV  C +  QA A+ R  PGN + + +  G  GS     KE+LLR YFNGR+FG  
Sbjct: 13 VLQIWVC-CEYSCQAGAI-RIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTFGFN 72

Query: 82 --SRGFQEKKRTVPSCPDPLHN 95
            + GF+E KR VPSCPDPLHN
Sbjct: 73 RTANGFEESKRRVPSCPDPLHN 92

[Close]

BLAST of CmaCh15G009860 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 17  SFFLMVFFIWV----VFCHHRHQATAVARPFPGNQKP---EQSVSGGA--GSKEKLLRTY 76
           +F +++  +WV    V CH + +A+ +  P P    P   ++S+SG     +K  LL+ Y
Sbjct: 17  AFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLLQKY 76

Query: 77  FNGRSFG----SRGFQEKKRTVPSCPDPLHN 95
           FNGR+F       GF++ KR +PSCPDPLHN
Sbjct: 77  FNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of CmaCh15G009860 vs. ExPASy TrEMBL
Match: A0A2N9G6I6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 20 LMVFFIWVVFCHHRHQATAVARPFPGNQK----PEQSVSGGAGSKEKLLRTYFNGRSFG- 79
          + VF IW+  C +  QA A+ R FPGN       E+S+     SKE+L   YF+GR+F  
Sbjct: 11 MSVFQIWLC-CEYSCQARAI-RIFPGNGVAKFIKEKSIDKKI-SKEELFHKYFSGRTFSL 70

Query: 80 -----SRGFQEKKRTVPSCPDPLHN 95
                 GF E KR VPSCPDPLHN
Sbjct: 71 NNKTDDNGFDESKRRVPSCPDPLHN 92

[Close]

BLAST of CmaCh15G009860 vs. ExPASy TrEMBL
Match: A0A5N6Q3Y4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 10 RRRRFLPSFFLM--VFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTY 69
          RR+ +L +  +M  V  IWV+   H    +A   P P    P Q     A  + +L R +
Sbjct: 7  RRKVYLVALLIMLSVLQIWVLSSDHCSIRSATPPPPPSPPPPPQ--DSDAVKRLELHRKF 66

Query: 70 FNGRSFGSRGFQEKKRTVPSCPDPLHN 95
          FNGR F  + FQE KR VPSCPDPLHN
Sbjct: 67 FNGR-FPDKSFQENKRIVPSCPDPLHN 90

[Close]

BLAST of CmaCh15G009860 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 3   GGAIPPRRRRRFLPSFFLMVFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEK 62
           GGA PPRRRRRFL SFFL++FFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEK
Sbjct: 10  GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEK 69

Query: 63  LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95
           LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN
Sbjct: 70  LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101

[Close]

BLAST of CmaCh15G009860 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 3  GGAIPPRRRRRFLPSFFLMVFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEK 62
          GGA PPRRRRRFL SFFL++FFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEK
Sbjct: 4  GGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEK 63

Query: 63 LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95
          LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN
Sbjct: 64 LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95

[Close]

BLAST of CmaCh15G009860 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 4  GAIPPRRRRRFLPSFFLMVFFIWVVFCHHRHQATAVARPFPGNQKPEQS-VSGGAGSKEK 63
          G + P R+RRFL +  +M  FIWVVFCH        AR FP N  PE++ V GG GSKEK
Sbjct: 3  GGVTPTRQRRFLSTLLVMALFIWVVFCH--QPGAVSARLFPENLIPEETHVGGGGGSKEK 62

Query: 64 LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95
          LLR YFN    G RGF++ KRTVPSCPDPLHN
Sbjct: 63 LLRKYFN----GMRGFEDNKRTVPSCPDPLHN 88

[Close]

BLAST of CmaCh15G009860 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 7.8e-16
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 8  PRRRRRFLPSFFLMVFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTY 67
          P RRRR L  FF+++FFIWVV       A+A+ARP   ++ P+    G  GSKEK    Y
Sbjct: 8  PSRRRRLLSYFFIILFFIWVVV--GNQAASAMARPLEESENPDM---GAVGSKEK----Y 67

Query: 68 FNGRSFGSRGFQEKKRTVPSCPDPLHN 95
          FNGRS GSR F+E KRTVPSCPDPLHN
Sbjct: 68 FNGRSLGSREFEENKRTVPSCPDPLHN 85

[Close]

BLAST of CmaCh15G009860 vs. NCBI nr
Match: KAB1221059.1 (CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra])

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-09
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 22 VFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS-----KEKLLRTYFNGRSFG-- 81
          V  IWV  C +  QA A+ R  PGN + + +  G  GS     KE+LLR YFNGR+FG  
Sbjct: 13 VLQIWVC-CEYSCQAGAI-RIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTFGFN 72

Query: 82 --SRGFQEKKRTVPSCPDPLHN 95
            + GF+E KR VPSCPDPLHN
Sbjct: 73 RTANGFEESKRRVPSCPDPLHN 92

[Close]

BLAST of CmaCh15G009860 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 44.3 bits (103), Expect = 6.6e-05
Identity = 30/93 (32.26%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 9  RRRRRFLPSFFLMVFFI-WVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTY 68
          R  R  L +  LMV  + +++     +      R FP      ++ + G   +E L++ Y
Sbjct: 5  REWRSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFP------ETPASGKRQEEDLMKKY 64

Query: 69 FNG------RSFGSRGFQEKKRTVPSCPDPLHN 95
          F         SF  +G  E KR VPSCPDPLHN
Sbjct: 65 FGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of CmaCh15G009860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUA1	9.3e-04	32.26	CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P...	[more]

BLAST of CmaCh15G009860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDX3	3.8e-16	57.47	Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6A1W705	2.6e-09	51.22	CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G01...	[more]
A0A0A0KR66	1.2e-06	38.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A2N9G6I6	4.6e-06	45.88	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1	[more]
A0A5N6Q3Y4	1.0e-05	42.53	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01912 PE=4 SV=1	[more]

BLAST of CmaCh15G009860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579278.1	2.1e-45	95.65	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7016789.1	2.1e-45	95.65	hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601785.1	2.0e-19	58.70	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAA0063931.1	7.8e-16	57.47	putative Clavata3/esr-related 43 [Cucumis melo var. makuwa]	[more]
KAB1221059.1	5.4e-09	51.22	CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra]	[more]

BLAST of CmaCh15G009860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25905.1	6.6e-05	32.26	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..60
None	No IPR available	PANTHER	PTHR37184:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 9..94
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 9..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G009860.1	CmaCh15G009860.1	mRNA