CmaCh15G008860 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G008860
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 4516695 .. 4518062 (+)
RNA-Seq ExpressionCmaCh15G008860
SyntenyCmaCh15G008860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGGGGTTAGAGGTAAATTCAAGGGGAATGAGATCCGAGCTAGCAAATGTGGGCATGTCATTATCACACAGATTTGCGATGGAGATTTTCTTCCCCTTCCCACCATTTTGATTCTCCCTCCCTCCCACACAGTAAAGAGAGAGAGAGCCAATAAAACTAAAAACCCCATAGAAAAACTTGTAAATTTTGAGTTTTCTGGTTCTGGGTTCTTTCATTCAGGTTGAAGCTGTTTCCGCTCTTCTCTGTTTTGTTAATGGAGGAGGAGCCTACTTGTATGTACTCACTACAAAAAGCGAGCTCACAGCAGATGAGAGAGAGAGAGGGGAAGAAGAATAATAATATTTTATAAAAAAAGGTACACAAAGCCAGAGAGGAATAGAGGCACACATAGTGGGTTTCTGCCATAGTGAAAGAGTATTGGGAAGGAGAGCGATTTAGGAGACACCAAAGTTATCCCAGAAATCGTTTCTGATTTCAATTTTCTTGAGCTCCAAAGAACAATCAAGAAAGGGAAATAACAATCGGGGGGAGCAATTGAAGAAATCCCATGTGAAATTCTGCGGTAAAAGCCACTCCGGATCGATCTGTGGAGGACCTTCTTCCTCCTCCATCATCTCTGCAAATCATTGGTTGCATTTTCCATCTTTTGTGATACCCAGGTGAGCAAAACTGCAAAAGCATTGTTTCTTTTGATAACCCACTTTCCCCCTTTCCTTTTCTTTTTGTTTTCTTTTTGTTTTCTTTCTGCTCTGTCTCTCTCTGTGTCTGTGTGTATGTGTGTGTTTCTTCTTGTGTTCTTCGCTGCGCGTGTGTGGTTTGTCTTGGGAGCAGCGGAGCGTTCAGCTATGAATTTGATTGTTTAATGGAAGTGAAATGGGTAACAACTGAACTTCACGCCTTGAGGAAGGAGGAGTAGATGGACATGATTAGCTTACACTGTTCTGCATTTTTTTATTGTTTGTTTCCTTTTTTGTTACGCAAAGACGTCATTGACCAGAAAGTATATGAAGAGGAATTCTTTGGAATGTGGGCTTTTCTCTCTCCCTTGCCTCTTATTTTCATTTTTGACCACAATTTGAACACCCCATCTTTTCAGACTCGGGCTTGTCTCTAGGAATTGAACGGCTCTCTTTATTGATTCTGACTCGACTCATCGTCTTTCCTCCCTAATCTAGGAATGGGTTTAAAAAGGAAATGGGTTTTTTCGGTTTTGCTTTCTGAGCTTCAAATCTAACAGGTGACAATCTGCCTCTTGTCAACCTTTTGCTTTTTCTGTTTAATTGCAGGAGAAACTGTGGGAGGAGTTTTCAGAAAGAAAGTGAGCGAGCTCAAGAATGTTGCTGGTTCTTCAGGTTGGCCTAG

mRNA sequence

ATGGAGAGGGGGTTAGAGGTTGAAGCTGTTTCCGCTCTTCTCTGTTTTGTTAATGGAGGAGGAGCCTACTTGTATGAGACACCAAAGTTATCCCAGAAATCGTTTCTGATTTCAATTTTCTTGAGCTCCAAAGAACAATCAAGAAAGGGAAATAACAATCGGGGGGAGCAATTGAAGAAATCCCATGTGAAATTCTGCGGTAAAAGCCACTCCGGATCGATCTGTGGAGGACCTTCTTCCTCCTCCATCATCTCTGCAAATCATTGGTTGCATTTTCCATCTTTTGTGATACCCAGGAGAAACTGTGGGAGGAGTTTTCAGAAAGAAAGTGAGCGAGCTCAAGAATGTTGCTGGTTCTTCAGGTTGGCCTAG

Coding sequence (CDS)

ATGGAGAGGGGGTTAGAGGTTGAAGCTGTTTCCGCTCTTCTCTGTTTTGTTAATGGAGGAGGAGCCTACTTGTATGAGACACCAAAGTTATCCCAGAAATCGTTTCTGATTTCAATTTTCTTGAGCTCCAAAGAACAATCAAGAAAGGGAAATAACAATCGGGGGGAGCAATTGAAGAAATCCCATGTGAAATTCTGCGGTAAAAGCCACTCCGGATCGATCTGTGGAGGACCTTCTTCCTCCTCCATCATCTCTGCAAATCATTGGTTGCATTTTCCATCTTTTGTGATACCCAGGAGAAACTGTGGGAGGAGTTTTCAGAAAGAAAGTGAGCGAGCTCAAGAATGTTGCTGGTTCTTCAGGTTGGCCTAG

Protein sequence

MERGLEVEAVSALLCFVNGGGAYLYETPKLSQKSFLISIFLSSKEQSRKGNNNRGEQLKKSHVKFCGKSHSGSICGGPSSSSIISANHWLHFPSFVIPRRNCGRSFQKESERAQECCWFFRLA
Homology
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BLAST of CmaCh15G008860 vs. NCBI nr
Match: KAG6579181.1 (hypothetical protein SDJN03_23629, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-25
Identity = 68/118 (57.63%), Postives = 70/118 (59.32%), Query Frame = 0 

Query: 6   EVEAVSALLCFVNGGGAYLYETPKLSQKSFLISIFLSSKEQSRKGNNNRGEQLKKSHVKF 65
           +VEAVS LLCFVNGGGAY                                          
Sbjct: 7   KVEAVSTLLCFVNGGGAYF----------------------------------------- 66

Query: 66  CGKSHSGSICGGPSSSSIISANHWLHFPSFVIPRRNCGRSFQKESERAQECCWFFRLA 124
               HSGSICGGPSSSSIISA+HWLHFPSFVIPRRNCGRSFQKESERAQECC FFRLA
Sbjct: 67  ----HSGSICGGPSSSSIISAHHWLHFPSFVIPRRNCGRSFQKESERAQECCRFFRLA 79

The following BLAST results are available for this feature:
BLAST of CmaCh15G008860 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G008860 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G008860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579181.12.3e-2557.63hypothetical protein SDJN03_23629, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh15G008860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G008860.1CmaCh15G008860.1mRNA