CmaCh15G008570 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G008570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ribonuclease P protein subunit p38
Location	Cma_Chr15: 4318266 .. 4322055 (+)
RNA-Seq Expression	CmaCh15G008570
Synteny	CmaCh15G008570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATAAGCCTTGAGTGGGCCGTGGAGGAAGCAGTAGTTCGTCCAGTTCCAGTACGGCGTTAGTCCAATCGAAGAACGTCGCTCCTATTTCTCTCCAGACTCGAAAGCTACACTTTCGAGCAAGTTTTCAGCCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGAGTAAGCCTGCTTTTCTTTCTCACTTTCATGCTTTTCGGACCTTTTCCCGCTCTTCTCCATTCCATCTCTTATCTTAATGTTTTTGTTAATTTACGATGGATTTTGTTTTCGGAATTTGACTGTCCCAGTTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGTAGACAATAGTTAATTTGTCTAATAATGCGCTTCAAGCCACCAATAGCTGATCATTGTACTTAACAGGGAGATAAAGAGAGCAAGATTTCTGAATGCGGATTCCTTGCCGGAAAAAATTTGGCTCAAGGTTTCCACTAATTTTTCTGTTTCAATGATGTTTCTCCGTATTTTTAACGTCTTTAGTTTCTCCTTGCCGTGCCATATCGGTATCGATGTTTGTTATTAGTTAGAGAAACAAAAATTGAATTCATGACTCCTTTTATAAGCCGCTGATGTTGAGTGATGGGCTTCTTTTTAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGTATGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGTTTGAATACTCTTATCTAGGGTTCAGGAATTTGCCGGATGCTTATTAATAGAATCCCAGCTTTTCCCTTCTACGGTAGTGTTGTTGCTCTTCACTTTATTATTTTTGGTGGATTGATGGACCCTTTAATTAGCTCGAAGTCATAAGTGTTACTTTCTTGGTTTTGTTTCAGTTTTGTGTCAATTTCATGCGTGACAACCAATTTAAAACTTGGCCTGCATTTGGCGCTTCCATGAGCTCTAGTTATGATAAGCGGATTTATGTAGCTATCCGTTAGATTTCATCCTTTTAAATTGGGGTCCATGTCTATAGTTTGATGGGCTCTGTTAATTTTACTGTTTTTTGTATGTTCTTGTAAGTTCTTTCAATCTTTTCCCCTATTAATGAAAGCTGGGTTTCTTATAGAAAAATTAAAAATAAGTGACCTCGATACTTCAAATACTAGGTTAAAGAGAAGGTCAAGGTAACCATTTCATGTGTGTGAGCGCGAGCACACGTCTTTCATGGGAAGAGAATCAATTTAAAACATGAGCCACATTTGCTGTTTCCATGAGCTCTAGTTGTGATAAGCAAAATTTCTGTAATTATCGTTAGGTTTTATCCTTTAAAATTGGGGTTCTTTTTTTGTTGTTTGATGGACTCCATTTATTGGTTGTTCTTTTGTATGCCCTTTGTTCATTCTTTTAATTTTTTGTTTAATCAATGAATTAGCTGACCTAGATACTGTAAATACTAGGTTAAAGACCCTCTTGCACCAAATGTCCTGTTTACTTAATAGGCAATGATAATCGCACAACAGAAGATCTCAAATGCCGTAGACATGAACTTCTTAGGAGGCTAGTCGTGCAGTGAAAAACCATGTATGTTTAGAAAAATGTTTTGGAGGTTAAAAGATGTTAAACTGGTAGAACCAAGAAGCGAAGATGAAGTCCATGGATGAACACTCCCATAAGTCTTTTTGGATTAGGCAATGGTGTATACAGTTCATGCCTGCCACTTGAGAACTAGATATCTCATAGAGTTAGTAACTTCCAGCCTAGGTTGTGGCCTTAAGAAATGTAATTATCTTGTCCAAAGTGTCCAATTCATCCATTCGAGTGTACTTGAGGACAGTAATTTCTTTTGAGAGAAAAAGTTCCACTGTGGAAAGTTCTTGTTGATTCTCATGTTGAAGGCAATTATCCTAAAACTTCCTAAAGCCCTCATAGTCTTGATACAAATTTTCATTGGTGCCAAATGATATCAACAAATCCATTAGTGTAGTTAACATGGTTACATGCCTTCTTCTTGGGAGTACGCCACTTGATTGGTATAGCCATTGAAATGTGCTTGGCCACAGTCCAAAACTTCTACAAGAATGATCACTTGTCCATGCATCCTACAGAATGTTGTTTGTGAAGCATTCCATCTCAATGTTTGGTGCAAGTATGAAGTAAATTTGTGGGGACTACGTAGTATTCCTTATGTAGCAAGAATTGAAACGAGACTTTGAACTCCTATTGGTAAGTGGACTTTTCCTCCGTGGTAAGCTTAGTTTCTCACTAAAATATTTCATAGACTTGCCATTTTTAGATAGGACTGCTCCCATACCTTTAGCAGAAGCATCCATCTGGACTTCAAAGAGGAGGCCGCATTTTGGCCAGGCCAAGATGGCTGCAACTATCTGCTTTCCTTCAGTGTTTGGAGGACTATTTCTATAGTCCCAGGATAGCTAGTATGGGTCCACTCATACAAAATTGGTTCCCATTACGAATCCTAAGAACAACAGTTTTGTAAGAAGCATTTACTTAGAGATATTAAAGTAAAGCTCGGTGGAATTTAGAGCAGTTTGTCGTCTAAGTAGACAATAAGGGATTTACCTCATATGTATGGTCATAATACATGTACCATCAGGCACATCAAAGTACTTGGAGCTTTGATCGAGCCAAAAGCCACACGCACAACTTACCTTATTTGCAGTCTTGAAGGCTATTTTTCATTATCTCTTGGTTTACTGCAAATTTGATGTTAGTGACTTTTAATGTCTCGTTTAGCGAAGAGGATTGCAGTGCACCACGTAATTGGTCTACGAGTTTTGAAAGTGGTTTTGTACAGGGAGTTGATATTTTATGGCAAATTTATCTCTATTTTTGTTATGGATTCTATACTTCCTAGTTCAGAAATGAATGTCATTTTGAATTCCCTAGGACATGCATCTGCTTGATATATAAACTCATGTTTTTAAACTCAACTCATCAAGCTTTGCCTACTGTCTTTTCTATATACGGTGTCTAATTATTCGGCGTTTCGCCTTTTATTATGTAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGGAGGAAATATTAGATAATGAATAGCCTGTTCAACTTTTTTTCTAAAAACGCTATTATTAACAAAGTTTCATGTTTCCAAACGAATTGCAGGATAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTTCAAGAACAACATAAAAACAGGTGGCAGAATACAACAAAGTTGTCTAGTGTACAGTAAAAATGGTATGAAATAGAGGCAGTCTGAGATTTGTAGTTCGTGCTGATTCACTCTTGATAATGACCGCCACTATGGCTTTTAGTATCCTTATAAAGAATATTTGCAGAAGCCTGAGATGGTAGGATAGCAATTGTTATGTAATACATTGTGGGATTCCAAATTGCGTGCGGAGTTTAAATTTCGTGTTGTTATTGTGGCTGATAGAGTTCAAATAGTCCATAACATCTTGTCTTCTCCATTCTATTGGAAGTAGTAAAATGAAAAAAAGATTACTTCTGTTTGAAATGCCTTTAATTTTTTAGGTAAGCCGTCTTTTTAGAGAAATTTTCAATGTATATTCC

mRNA sequence

CAAATAAGCCTTGAGTGGGCCGTGGAGGAAGCAGTAGTTCGTCCAGTTCCAGTACGGCGTTAGTCCAATCGAAGAACGTCGCTCCTATTTCTCTCCAGACTCGAAAGCTACACTTTCGAGCAAGTTTTCAGCCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATTTCTGAATGCGGATTCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGTATGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGATAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTTCAAGAACAACATAAAAACAGGTGGCAGAATACAACAAAGTTGTCTAGTGTACAGTAAAAATGGTATGAAATAGAGGCAGTCTGAGATTTGTAGTTCGTGCTGATTCACTCTTGATAATGACCGCCACTATGGCTTTTAGTATCCTTATAAAGAATATTTGCAGAAGCCTGAGATGGTAGGATAGCAATTGTTATGTAATACATTGTGGGATTCCAAATTGCGTGCGGAGTTTAAATTTCGTGTTGTTATTGTGGCTGATAGAGTTCAAATAGTCCATAACATCTTGTCTTCTCCATTCTATTGGAAGTAGTAAAATGAAAAAAAGATTACTTCTGTTTGAAATGCCTTTAATTTTTTAGGTAAGCCGTCTTTTTAGAGAAATTTTCAATGTATATTCC

Coding sequence (CDS)

ATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATTTCTGAATGCGGATTCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGTATGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGATAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTTCAAGAACAACATAA

Protein sequence

MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT

Homology

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BLAST of CmaCh15G008570 vs. ExPASy Swiss-Prot
Match: Q32LC1 (Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 5.0e-05
Identity = 36/111 (32.43%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 56  LKKQFAIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSL 115
           ++KQ AIG+NEVTR LER                    L   L      P  +T+H+  L
Sbjct: 109 VRKQLAIGINEVTRALERN------------------ELLLALACKSAKPAIVTSHLVQL 168

Query: 116 AISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSR 167
           ++SR VP   V     S RL  ++ LK  +A+G K N +   + +  IL R
Sbjct: 169 SVSRGVPACQV--PRLSERLAPVLGLKCVLALGFKRNTTAFGEELRAILPR 199

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BLAST of CmaCh15G008570 vs. ExPASy Swiss-Prot
Match: P78345 (Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 6.5e-05
Identity = 34/111 (30.63%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 56  LKKQFAIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSL 115
           ++KQ AIGVNEVTR LER                    L  +L+     P  +T+H+  L
Sbjct: 109 VRKQLAIGVNEVTRALERR------------------ELLLVLVCKSVKPAMITSHLIQL 168

Query: 116 AISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSR 167
           ++SR VP   V     S R+  ++ LK  +A+  K N +     +  I+ R
Sbjct: 169 SLSRSVPACQV--PRLSERIAPVIGLKCVLALAFKKNTTDFVDEVRAIIPR 199

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BLAST of CmaCh15G008570 vs. ExPASy Swiss-Prot
Match: Q80UU2 (Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 31/99 (31.31%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 54  IWLKKQFAIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVP 113
           + ++KQ  IGVNEVTR LER                    L  +L+     P  +T+H+ 
Sbjct: 102 VHVRKQLVIGVNEVTRALERN------------------ELLLVLVCKSVKPAIITSHLI 161

Query: 114 SLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDN 153
            L++SR VP   V   + S R+  ++ LK  +A+G + N
Sbjct: 162 QLSLSRTVPACQV--PQLSERIAPVIGLKCVLALGSRKN 180

[Close]

BLAST of CmaCh15G008570 vs. ExPASy TrEMBL
Match: A0A6J1K3C5 (ribonuclease P protein subunit p38 OS=Cucurbita maxima OX=3661 GN=LOC111489702 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.0e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRK 120
           AIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRK
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRK 120

Query: 121 VPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
           VPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT
Sbjct: 121 VPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 168

[Close]

BLAST of CmaCh15G008570 vs. ExPASy TrEMBL
Match: A0A6J1FDN9 (ribonuclease P protein subunit p38 OS=Cucurbita moschata OX=3662 GN=LOC111444805 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.8e-81
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA+SLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPS DSAR +NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLIGEIL RTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT 169

[Close]

BLAST of CmaCh15G008570 vs. ExPASy TrEMBL
Match: A0A6J1CZ90 (ribonuclease P protein subunit p38 OS=Momordica charantia OX=3673 GN=LOC111015626 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.9e-69
Identity = 139/168 (82.74%), Postives = 151/168 (89.88%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60
           MGKKAKSS    VV+SK ++D YEG+RLDELLQSIQREIKRAR LNA+SLP KIWLKKQF
Sbjct: 1   MGKKAKSSANAQVVRSKLHQDCYEGQRLDELLQSIQREIKRARLLNAESLPAKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           A+GVNEVTRVLERMTPS DSAR MNPNYKACTVRLQAILL  DCNPRWLTNH+P+LA+SR
Sbjct: 61  AVGVNEVTRVLERMTPSGDSARIMNPNYKACTVRLQAILLAGDCNPRWLTNHLPTLALSR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRT 168
            VPL+L+KDKEGSLRLGELVNLKTAIAIGIK NGS +NQLIGEIL  T
Sbjct: 121 NVPLLLMKDKEGSLRLGELVNLKTAIAIGIKANGSLINQLIGEILQGT 168

[Close]

BLAST of CmaCh15G008570 vs. ExPASy TrEMBL
Match: A0A1S3CR39 (ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.6e-69
Identity = 144/169 (85.21%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MGKKAKSSG-PVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQ 60
           MGK  KSS  PVA +QSK  EDSYEGERLDELL SIQREIK AR LNA+SLPEK WLKKQ
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKKQ 60

Query: 61  FAIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAIS 120
           FAIGVNEVTR LERMTP  DSAR MNPNYKAC V+LQAILLTA+CNPRWLTNHVP LA+S
Sbjct: 61  FAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAMS 120

Query: 121 RKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRT 168
           RKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLI EIL RT
Sbjct: 121 RKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 169

[Close]

BLAST of CmaCh15G008570 vs. ExPASy TrEMBL
Match: A0A1S3CQV2 (ribonuclease P protein subunit p38 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.1e-67
Identity = 144/170 (84.71%), Postives = 149/170 (87.65%), Query Frame = 0


Query: 1   MGKKAKSSG-PVAVVQSKRNED-SYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKK 60
           MGK  KSS  PVA +QSK  ED SYEGERLDELL SIQREIK AR LNA+SLPEK WLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAI 120
           QFAIGVNEVTR LERMTP  DSAR MNPNYKAC V+LQAILLTA+CNPRWLTNHVP LA+
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRT 168
           SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLI EIL RT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 170

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: XP_022993803.1 (ribonuclease P protein subunit p38 [Cucurbita maxima])

HSP 1 Score: 328.2 bits (840), Expect = 4.2e-86
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRK 120
           AIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRK
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRK 120

Query: 121 VPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
           VPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT
Sbjct: 121 VPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 168

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: KAG6579150.1 (hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016668.1 hypothetical protein SDJN02_21778 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 163/169 (96.45%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA+SLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPSEDSAR +NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLIGEIL RTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT 169

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: XP_023549838.1 (ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.2 bits (796), Expect = 5.3e-81
Identity = 161/169 (95.27%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA++LPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPSEDSAR +NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSP+NQLIGEIL RTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRTT 169

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: XP_022938626.1 (ribonuclease P protein subunit p38 [Cucurbita moschata])

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80
Identity = 162/169 (95.86%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60
           MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRAR LNA+SLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPS DSAR +NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLIGEIL RTT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRTT 169

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: XP_038875290.1 (ribonuclease P protein subunit p38 [Benincasa hispida])

HSP 1 Score: 292.4 bits (747), Expect = 2.6e-75
Identity = 152/169 (89.94%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60
           MGKKAKSS P AV+QSK NEDSYEGERLDE LQSIQREIK ARFLNA+SLPEKIWLKKQF
Sbjct: 1   MGKKAKSSAPDAVLQSKPNEDSYEGERLDEFLQSIQREIKTARFLNAESLPEKIWLKKQF 60

Query: 61  AIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120
           AIGVNEVTRVLERMTPS DSAR MNPNYKACTV+LQA+LLTA+CNPRWLTNHVPSLA+SR
Sbjct: 61  AIGVNEVTRVLERMTPSGDSARIMNPNYKACTVKLQAVLLTANCNPRWLTNHVPSLAMSR 120

Query: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
           KVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLI EIL R T
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEILQRKT 169

[Close]

BLAST of CmaCh15G008570 vs. TAIR 10
Match: AT4G01790.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-39
Identity = 86/151 (56.95%), Postives = 107/151 (70.86%), Query Frame = 0


Query: 18  RNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFAIGVNEVTRVLERMTPS 77
           +  D YEGERL  LL  IQR I+ ++  N +SLPEKIWLKKQ AIG+NEVTRVLERM P+
Sbjct: 21  KESDYYEGERLTHLLDLIQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPN 80

Query: 78  EDS-ARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKD-KEGSLRL 137
             S  + NP       +LQ ++L ADC PR LT H+P+LA SR VP++ V+D K  SLRL
Sbjct: 81  NTSDQQQNPK------QLQVVILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKRASLRL 140

Query: 138 GELVNLKTAIAIGIKDNGSPVNQLIGEILSR 167
           GELV LKTA+AIGIK  G+ +N L+ +IL R
Sbjct: 141 GELVKLKTALAIGIKARGNDLNLLLKQILPR 165

The following BLAST results are available for this feature:

BLAST of CmaCh15G008570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32LC1	5.0e-05	32.43	Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2	[more]
P78345	6.5e-05	30.63	Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2	[more]
Q80UU2	3.2e-04	31.31	Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1	[more]

BLAST of CmaCh15G008570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3C5	2.0e-86	100.00	ribonuclease P protein subunit p38 OS=Cucurbita maxima OX=3661 GN=LOC111489702 P...	[more]
A0A6J1FDN9	5.8e-81	95.86	ribonuclease P protein subunit p38 OS=Cucurbita moschata OX=3662 GN=LOC111444805...	[more]
A0A6J1CZ90	3.9e-69	82.74	ribonuclease P protein subunit p38 OS=Momordica charantia OX=3673 GN=LOC11101562...	[more]
A0A1S3CR39	8.6e-69	85.21	ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CQV2	2.1e-67	84.71	ribonuclease P protein subunit p38 isoform X5 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

BLAST of CmaCh15G008570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993803.1	4.2e-86	100.00	ribonuclease P protein subunit p38 [Cucurbita maxima]	[more]
KAG6579150.1	1.8e-81	96.45	hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023549838.1	5.3e-81	95.27	ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo]	[more]
XP_022938626.1	1.2e-80	95.86	ribonuclease P protein subunit p38 [Cucurbita moschata]	[more]
XP_038875290.1	2.6e-75	89.94	ribonuclease P protein subunit p38 [Benincasa hispida]	[more]

BLAST of CmaCh15G008570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01790.1	1.9e-39	56.95	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR47903	OS07G0636400 PROTEIN	coord: 13..166
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 94..154 e-value: 4.5E-6 score: 26.3
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 31..167 e-value: 2.3E-21 score: 77.5
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 30..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G008570.1	CmaCh15G008570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome