CmaCh15G008100 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G008100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic
Location	Cma_Chr15: 4083413 .. 4085619 (+)
RNA-Seq Expression	CmaCh15G008100
Synteny	CmaCh15G008100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGTGGAAAGGTTAACGGCAACCACAAGATGCGGCAGTGACGTTCACAAGCAAAGCTTTTATCCTTTTCTTCTTGCTTGTGGCTGTGGCTCTCTCTTCTTCTTCATCAAACTCACTCCCCCTCCTTTCTCTGGTCGACGTTAATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTTCTTCCCCATCTCTCCCTCCCAGTTCCTTCTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCGGACCTCGCACTCATTTCAGGCCGCAGAGATCAATAGCGGTCAGAGTCAATGTGGAGCCGCTCGTCGCTTTTCAAGACCAACACAACTCCACCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTCATCTCCGTTCCTGGCCTGTGGTCTCTCATCAAGCGATCGGTCAAATCCAAGGTTATTTATAAATTCACCTCCGGTGCAATTCGAATTACATCGTTCTGTTATTTCTCTGTTTATGTTGTGTATTGATTGAATCGCGTCGATTAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCGAAGTCACTGATAGAGGCGAAACCATTACGTAATGCGATTTTCTTTTGGAATTTGTTACAATTTTGTGATTCATTTTTTTCTGAGTGTTAAGTTCAATTGCATTGAATTAACTTCTGGATGTTCGATTGATGTTTAATTGTGAAGGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCGTAAGTGCCACTGAACTTCTCTCCTATATCTTCAAACTTTCTTGGTGGTTGAAGTTTCACGACTGGGATTTGACTCATGGCATGCATGCTTGTTTGATAGTCATTTTGAAATTACTAGATTCTTGATCATTCAAAACCAATGTTTCAAGAAGTTTGAATGATTAATGACATATTTGAGATCGATTTTATGAAAGCTATTTTAATCCTTTCAAACACGTTTGCCTTTAAATCATGAGCTCCTTCATTACCCAATCCAAAATTTGAATATTCAAAATTTTCAAAATTCTTATGTAACGAATAAATAACCTATATTCATTGAGATTTTCTTAGATCTTTGGTTTTAATTTAGTCTTCATACCTTTCGAAAAGAAAGAAATTATGCTTTGTCATTGAAGTTTGGATCAAAGATTTTCTGAGATATTTGATTTTAGTTTAGGCTTCATACCTTCCGAAAATCATATGATCTTTTAAGCTTCAAAATTTTGTTGTTTCTTCTCAATTTACCAATTATGGTTTTCATCTCCTACATCAATCCAAAAGCAAAATTTTTAAAATATGACTTAGTAAATTGCTACTACCCTATATTTCATTGATCAAAGTGTTAGATGCATTATATAATTGAACTCAATAATATGTGAGTAGAAATTTTGAGTCTCTATCATATAGATGTATAAATTCACGAAAGTTTCTGACAAATTGTATGAACTACAATTTAATTTTAATTAACCTTTTATTACAAAGTCCTAATAATATCATAAACAGGTCTCTCAAATTCAAATTCAAATTCAAATTCTATCTATGATTATAAGATTGAGATATATGAGAGAAGCTTAGAAGCTAATGTGAGGCTGTTTGAAAACTGCAGAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGCAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGATTATTATCAGTTCATCATCTTTTTTTTTCTTTACCATAGTTGTAGGAATCTTCATGAGTTACATTCAATCAGTCCAGATTCTGGAAAAGAATTGAAACTTGTACAACAATTTTCCAACACATGAATCATACCATCAAAATTCAATATGGCCACATGGATCTTCTAATCTCTCTTTCACTCATTCAGTCAAATTATTTTAGATTCATTCA

mRNA sequence

ATTTGTGGAAAGGTTAACGGCAACCACAAGATGCGGCAGTGACGTTCACAAGCAAAGCTTTTATCCTTTTCTTCTTGCTTGTGGCTGTGGCTCTCTCTTCTTCTTCATCAAACTCACTCCCCCTCCTTTCTCTGGTCGACGTTAATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTTCTTCCCCATCTCTCCCTCCCAGTTCCTTCTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCGGACCTCGCACTCATTTCAGGCCGCAGAGATCAATAGCGGTCAGAGTCAATGTGGAGCCGCTCGTCGCTTTTCAAGACCAACACAACTCCACCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTCATCTCCGTTCCTGGCCTGTGGTCTCTCATCAAGCGATCGGTCAAATCCAAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCGAAGTCACTGATAGAGGCGAAACCATTACGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGCAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGATTATTATCAGTTCATCATCTTTTTTTTTCTTTACCATAGTTGTAGGAATCTTCATGAGTTACATTCAATCAGTCCAGATTCTGGAAAAGAATTGAAACTTGTACAACAATTTTCCAACACATGAATCATACCATCAAAATTCAATATGGCCACATGGATCTTCTAATCTCTCTTTCACTCATTCAGTCAAATTATTTTAGATTCATTCA

Coding sequence (CDS)

ATGGCGGTTAAGTTTTTACCATCTCATCTCTATCCTCTTTCTTCCCCATCTCTCCCTCCCAGTTCCTTCTCCGCCGGAGACCTAACTCCACGGCCATGCTTTGGCGGACCTCGCACTCATTTCAGGCCGCAGAGATCAATAGCGGTCAGAGTCAATGTGGAGCCGCTCGTCGCTTTTCAAGACCAACACAACTCCACCTTCCTCCTGGCTGAGAGTGTCGGCTATTCCACGGCCAGTTACTACACTTCTCTCGGCCTTTTCGTCATCTCCGTTCCTGGCCTGTGGTCTCTCATCAAGCGATCGGTCAAATCCAAGGTTGTGAAGAAGACATTCGTTAGTGAAGGAGAATCGAAGAAGGCGCCGAATCAGTTTGCTGGAGAGATTCTGTCGTTCTTCACTCGCAATAATTTCGAAGTCACTGATAGAGGCGAAACCATTACGTTTGAAGGAACTATGGTGCCGAGTCGAGGCCAAGCGGCGTTGTTGACATTTTGTACGTGCATTAGCTTGGCCAGCGTTGGTCTTGTTCTGACCATAACATTTCCAGATATTGGCAACAATTGGTTCTGGCTTAGCAGCTTGAGTCCCTTAGCAGGAGCATATTACTGGGTGAAAGCATCAAGAAAGGAGGAGATCAAAGTTAAAATGATAGTTGCAGAAGATGGAAGCCTGGGAGAGATTATTGTTCAAGGAGATGACCAGCAGGTAGAGCAAATGAGAAAGGAGCTTCAATTGAGTGAAAAGGGCATGGTCTATGTCAAAGGTATTTTTGAGCAATGA

Protein sequence

MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQDQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKAPNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMRKELQLSEKGMVYVKGIFEQ

Homology

[Close]

BLAST of CmaCh15G008100 vs. ExPASy Swiss-Prot
Match: Q9LSE4 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB1 PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 5.6e-80
Identity = 155/202 (76.73%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 59  FQDQHNSTFLLAESV-GYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGES 118
           ++   NS  L+ E+  GYS ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV   + 
Sbjct: 65  WEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFV-VNDV 124

Query: 119 KKAPNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL 178
           KK P Q AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASVGLVL
Sbjct: 125 KKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVL 184

Query: 179 TITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVE 238
           TIT PD GNNWF++  LSPLAG YYW KASRKEEIKVKM+V   G L EI+VQGDD QVE
Sbjct: 185 TITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVE 244

Query: 239 QMRKELQLSEKGMVYVKGIFEQ 260
           +MRKELQL+EKGMVYVKG+FE+
Sbjct: 245 EMRKELQLNEKGMVYVKGLFER 265

[Close]

BLAST of CmaCh15G008100 vs. ExPASy TrEMBL
Match: A0A6J1JUD8 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488985 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 3.4e-141
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60

Query: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CmaCh15G008100 vs. ExPASy TrEMBL
Match: A0A6J1FEF5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111444976 PE=4 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.4e-137
Identity = 252/259 (97.30%), Postives = 254/259 (98.07%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPL SPSLPPSSFSAGDLTPRPCFG PRTHFRPQRS+AVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           D HNS FLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CmaCh15G008100 vs. ExPASy TrEMBL
Match: A0A0A0KRU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.2e-117
Identity = 222/260 (85.38%), Postives = 234/260 (90.00%), Query Frame = 0


Query: 1   MAVKFLP-SHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAF 60
           MA K LP SHLYP     LP +SFSA DL+PRPCF  PRTHF+P RS+ VRV+ EPLVA 
Sbjct: 1   MAAKLLPSSHLYP-----LPSNSFSAIDLSPRPCFARPRTHFKPHRSVTVRVSAEPLVAL 60

Query: 61  QDQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           QD +NS FLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE  SKK
Sbjct: 61  QDHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDGSKK 120

Query: 121 APNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQM 240
           T+PD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEI+VQGDDQQ++QM
Sbjct: 181 TYPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIVVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of CmaCh15G008100 vs. ExPASy TrEMBL
Match: A0A5A7VG78 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00110 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.2e-116
Identity = 220/260 (84.62%), Postives = 232/260 (89.23%), Query Frame = 0


Query: 1   MAVKFLP-SHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAF 60
           MA K LP SH YP     LP +SFSA DL+PRPCF  PRTHF+P RS+ V+VN EPL+A 
Sbjct: 1   MAAKLLPSSHFYP-----LPSNSFSAVDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60

Query: 61  QDQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           Q+ +NS FLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE ESKK
Sbjct: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120

Query: 121 APNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNF+VT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQM 240
           TFPD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEIIVQGDDQQ++QM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of CmaCh15G008100 vs. ExPASy TrEMBL
Match: A0A1S3CPE0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503108 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.9e-116
Identity = 220/260 (84.62%), Postives = 232/260 (89.23%), Query Frame = 0


Query: 1   MAVKFLP-SHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAF 60
           MA K LP SH YP     LP +SFSA DL+PRPCF  PRTHF+P RS+ V+VN EPL+A 
Sbjct: 1   MAAKLLPSSHFYP-----LPSNSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIAL 60

Query: 61  QDQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           Q+ +NS FLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSE ESKK
Sbjct: 61  QEHNNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKK 120

Query: 121 APNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNF+VT RGETITFEG MVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQM 240
           TFPD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDG LGEIIVQGDDQQ++QM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKEL+LSEKGMVYVKGIFEQ
Sbjct: 241 RKELKLSEKGMVYVKGIFEQ 255

[Close]

BLAST of CmaCh15G008100 vs. NCBI nr
Match: XP_022992736.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 510.8 bits (1314), Expect = 7.1e-141
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60

Query: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CmaCh15G008100 vs. NCBI nr
Match: XP_022938901.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita moschata] >KAG6579098.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 498.8 bits (1283), Expect = 2.8e-137
Identity = 252/259 (97.30%), Postives = 254/259 (98.07%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPL SPSLPPSSFSAGDLTPRPCFG PRTHFRPQRS+AVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           D HNS FLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CmaCh15G008100 vs. NCBI nr
Match: XP_023550037.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 498.0 bits (1281), Expect = 4.8e-137
Identity = 251/259 (96.91%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60
           MA K LPSHLYPL SPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRS+AVRVNVEPLVAFQ
Sbjct: 1   MAAKILPSHLYPLPSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           D HNS FLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CmaCh15G008100 vs. NCBI nr
Match: KAG7016624.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 495.7 bits (1275), Expect = 2.4e-136
Identity = 251/259 (96.91%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MAVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ 60
           MAVKFLPSHLYPL SPSLPPSSFSAGDLTPRPCFG PRTHFRPQRS+AVRVNVEPLVAFQ
Sbjct: 1   MAVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ 60

Query: 61  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120
           D  NS FLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA
Sbjct: 61  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 120

Query: 121 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180
           PNQFAGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT
Sbjct: 121 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 180

Query: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 240
           FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQMR
Sbjct: 181 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 240

Query: 241 KELQLSEKGMVYVKGIFEQ 260
           KELQLSEKGMVYVKGIFEQ
Sbjct: 241 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of CmaCh15G008100 vs. NCBI nr
Match: XP_038874658.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa hispida])

HSP 1 Score: 446.0 bits (1146), Expect = 2.1e-121
Identity = 231/260 (88.85%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 1   MAVKFLP-SHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAF 60
           MA K LP SHL P     LP +SFSA DLTPRPCFG PRTHF+P RS+ VRVN EPLV  
Sbjct: 1   MAAKLLPSSHLCP-----LPSNSFSAVDLTPRPCFGRPRTHFKPHRSVTVRVNAEPLVVL 60

Query: 61  QDQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKK 120
           QD HNS FLLAESVGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKT VSEGESKK
Sbjct: 61  QDHHNSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTLVSEGESKK 120

Query: 121 APNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180
            PNQ AGEILSFFTRNNF+VTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI
Sbjct: 121 EPNQIAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTI 180

Query: 181 TFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQM 240
           TFPD GNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIV EDGSLGEIIVQGDDQQVEQM
Sbjct: 181 TFPDFGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQM 240

Query: 241 RKELQLSEKGMVYVKGIFEQ 260
           RKELQLSEKGMVYVKGIFEQ
Sbjct: 241 RKELQLSEKGMVYVKGIFEQ 255

[Close]

BLAST of CmaCh15G008100 vs. TAIR 10
Match: AT3G26710.1 (cofactor assembly of complex C )

HSP 1 Score: 298.9 bits (764), Expect = 3.9e-81
Identity = 155/202 (76.73%), Postives = 171/202 (84.65%), Query Frame = 0


Query: 59  FQDQHNSTFLLAESV-GYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGES 118
           ++   NS  L+ E+  GYS ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV   + 
Sbjct: 65  WEQNPNSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFV-VNDV 124

Query: 119 KKAPNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVL 178
           KK P Q AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASVGLVL
Sbjct: 125 KKEPKQVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVL 184

Query: 179 TITFPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVE 238
           TIT PD GNNWF++  LSPLAG YYW KASRKEEIKVKM+V   G L EI+VQGDD QVE
Sbjct: 185 TITVPDFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVE 244

Query: 239 QMRKELQLSEKGMVYVKGIFEQ 260
           +MRKELQL+EKGMVYVKG+FE+
Sbjct: 245 EMRKELQLNEKGMVYVKGLFER 265

The following BLAST results are available for this feature:

BLAST of CmaCh15G008100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSE4	5.6e-80	76.73	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop...	[more]

BLAST of CmaCh15G008100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUD8	3.4e-141	100.00	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A6J1FEF5	1.4e-137	97.30	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A0A0KRU8	1.2e-117	85.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G464810 PE=4 SV=1	[more]
A0A5A7VG78	2.2e-116	84.62	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuw...	[more]
A0A1S3CPE0	2.9e-116	84.62	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis ...	[more]

BLAST of CmaCh15G008100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992736.1	7.1e-141	100.00	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_022938901.1	2.8e-137	97.30	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_023550037.1	4.8e-137	96.91	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
KAG7016624.1	2.4e-136	96.91	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_038874658.1	2.1e-121	88.85	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Benincasa ...	[more]

BLAST of CmaCh15G008100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26710.1	3.9e-81	76.73	cofactor assembly of complex C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	CCB1	coord: 79..245 e-value: 2.5E-55 score: 186.4
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 44..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G008100.1	CmaCh15G008100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane