CmaCh15G007810 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G007810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	Cma_Chr15: 3885169 .. 3888755 (+)
RNA-Seq Expression	CmaCh15G007810
Synteny	CmaCh15G007810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACACTCTCACTCCCACTCTCACCTAGACTTCTTCCTCTCCGTGCTTGACGCTGTTGTCGGGCCGCCGCCTCTCCCCGTTCAGTGCCGCCGCCGCCTCTCTCCCACTTTGTCCCGCCGCCGCTGCCTCTCTACCAGTACGTCTTTCTTCACAGCAACTCAAATTAGCATTTGTGTAACGAAAGAAACAGGGAGTTGCTTTACTTAACAGAACAATCTCAGCTTATCAATGACTGTAGATTATAATCGGGTTTTAATGTTCATTGATTCTGGTTTACTGTCCCATACCCATATCATCGATTCAGTATTTTCTTCTCTCTCTTTTTTCTTGCTCTATCACAAATTGAGTCCACAAAACCCTCTTCTGCAATTCCCGTTTGCTGTTTCTTGAACTTATCCTCCTCAGATTCTTGCTTCTTCCACTTGTTCTTGCTCTTCTTTATCGCACTCTTAATTTCTTTAATCGTCGATGAATTCAAATGGGGTTTCCTTCAGGTATAGGGAGCCACTATGTTCTTCCACATAGTTTTGCAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAGAATCTGGTGTCAAAACTCATGAAAGATGTTGAGGGTACTTGCAGGTTTGTTATCTTTACCCCCACCGCGTGTATGATGCTAGAACATTGCTGTTGGTGTTGTTTTCTTTTTTGTTAAATTTACCTTTTCCATAAGACCCTGTGTGAGATCCCACCAAACATGCTTTATAAGGGTGTGTAAACCTCTTCCCAGCAGTCGCATTTTAAAAACCTCGGGGAAGCCCGAGTGGGGAAGTCCTAAGAGGACAATATCGACTTGCGGTGGGGTGGGGCGGTTACACCTTACTTCACAACTAAGTATCCAAAAAGCATTCACGATTTGAACTAGTTTAGCTAGGCAAGATGGTTGTGTAGTTTCTTGTAGGAAAACCTCCCTGGTAAGTCTCATTTTGTGAGATCCCACGTCGGTTGGAGGGAGGAACGAAACATTCATTATAAGGGTGTGGAAACCTCTTCCTAGCAGACGCGTTTTAAAAACCTTGGGGGGAAACCCGTAAGGGAAAGCTCAAATAGGACAATATCTGTTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGCCAGACACCGGATAGTGTGCCAGTGAGGATGTTAGGACCCTAAGGGGGTGGATTGTGAGCGATCCCACATTGGTTGGAGAGGGGAACGGAGCATCCCATATAAGGGTGTGGAGGTTACTTCTACCTAGCATATGCGTTTTAAAACCTCGAGGGAAAGCCTAGAAGGAAAGCCCAAAGAGGACAATATCTGCTAGCGATGGAGTTGGACTGTTACAAATGGTATAAGAGCCAGACACTGGGCTGTGTGCCAGCGAGGTTGCTGGATCCTAAAGGGGGGTGGATTGTGAGATTTCACATCAATTGGGGAGGAGAACGAAATATTCTTTATAAGGGTGTGGAGTTTTAAAAACTTTGAGGAGAAGCCCGGAAGAGAAACCCTAAAAAAGACAATATCTTCTCACAGTGGACTTGGGCTGTTGCAAATGGTATCAGAGCCAGACACCAGACGGTGTGCCAGCGAGGACACTGGGCCCCTAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGAGAACAAAACATCCCTTGCAAAGGTGTGTAAATCTCTCCCTAGCAAACGTGTTTTAAAACTTGAGGGAAAATCTAAAAGGAAAAGCCGAAAGAGGACAATATCTGCTAGTTATGGGCTTGGACGGTTACAACATGTCAGTTCATCAACCGACAAAAGCCAATAAAAACTGTAAAACTATTTGGTGGATGATATTGTTCTTTTAAAATGTTCAATACTTCTTTCAACTAGTGAACAATTAGATGGATTTTGTTATCGAAAAGTTTTGTACTTCGACAGTGGTCGACATGGTTTCATAGTAGCAATTACGGGAATTGAGAACATTGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGGTATCTATCTGGCACCATGGCACCCTTTTTTGATATCTAGCATGTGATTAATGAAGTTCTTTTGAATAGTAAATATGAATATGACTTCCATTGCAACTATTGTAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTAAGTATATGTTTATAACCCATTTCCCTATATCTTTTCAAAATAATGGCATAAAATCTATGAAATTCTGAGATCCGTTGGTTGGGGAGGAGAATGAAACCTTGTTAGTAGACAGGTTTTAGAAATCTTGAGGGGTAGCTCGAAAGGGGAAGTCCAAAGAGGACAATATATGCTAGCGGTGGGCTTTGGCAGTTACAAATGGTATCAGAGTCAGACATTGGATGATGTGCTAGCGAAGAGGTTGAGCCCCGAAGGGAGGTGGACACGAGGTGGTTTGCCAACAAGGACGTTGGGCCCTGAAGGGGGTAGATTGGGGGGTTCCACATCCATTAGAGAAGGGAACAAGTGCCAGTGAGGACGCTGGACCCCGAAGGGGGTGGATTGTGAGATCTCACATCGATTGGGGAGGAGAACGAAACATTCTTTATAAGAGTGTAGAAACCTTTTCCTAACAGACACGTTTTAAAAACCTTGAGGGGAAGCTTGAAAGGGAAAGCCCAAAGAGAACAATATTTGCTATCGGTGGGCTTGGGTTTGGGCTGTTATAGGAATAGGACGGTAGTGAGGCTCGGAGAGGTTCGTTGTGCCAATTGAACTTTTGTTACGATGTCAACAATGTCGTGCAATGTGTATTTTGGAGATATATTCAGAAATTCATTAGGAATGTCGTCACGGACTTCAGTTCTTGTGTTCGTTGTGTAGCGAAGTATTTAAGCAAGCTAACACTAACGCTTTCTCTCATCACGTGTTTCAGTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTATATCTCTATTTGACGTGCATTCTCTAACATAACGCTCTCTTGTCATGTTTTTACTGATTTATTTCTGCTCTCGTGTAGGTTAAGATTCAGAAGGACAGCGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATAGTAATGCCTTTTCTCCATTTAGTATCCTTAAAGATAACTCCATGTTTGTTGGTTGTTGTGAGTTTGATAGAATCTGCTGCGTTTCATTTAACTATTGCTTTCGCTTGCAGTTTTGTATTGGCACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGACAGCTTAGAACAATCTTGGTCGGGAATTTCTTCCCTAAGTTACCAGCTTGTTGTACACATTGTTAGTTTACTAATTTTACTGTCTAGTTTCTGCATTTCCTTGACTGTTCTCTGTCGAATGAAACGGATTCGTTTGCCCGTTACTTGGTGTAGCAATATTTGGAATGAGAAACGTATTTATAACGACCTAAGTCCAC

mRNA sequence

TTACACTCTCACTCCCACTCTCACCTAGACTTCTTCCTCTCCGTGCTTGACGCTGTTGTCGGGCCGCCGCCTCTCCCCGTTCAGTGCCGCCGCCGCCTCTCTCCCACTTTGTCCCGCCGCCGCTGCCTCTCTACCAGTATAGGGAGCCACTATGTTCTTCCACATAGTTTTGCAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAGAATCTGGTGTCAAAACTCATGAAAGATGTTGAGGGTACTTGCAGTGGTCGACATGGTTTCATAGTAGCAATTACGGGAATTGAGAACATTGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGCGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATATTTTGTATTGGCACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGACAGCTTAGAACAATCTTGGTCGGGAATTTCTTCCCTAAGTTACCAGCTTGTTGTACACATTGTTAGTTTACTAATTTTACTGTCTAGTTTCTGCATTTCCTTGACTGTTCTCTGTCGAATGAAACGGATTCGTTTGCCCGTTACTTGGTGTAGCAATATTTGGAATGAGAAACGTATTTATAACGACCTAAGTCCAC

Coding sequence (CDS)

ATGTTCTTCCACATAGTTTTGCAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAGAATCTGGTGTCAAAACTCATGAAAGATGTTGAGGGTACTTGCAGTGGTCGACATGGTTTCATAGTAGCAATTACGGGAATTGAGAACATTGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGCGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATATTTTGTATTGGCACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGACAGCTTAG

Protein sequence

MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA

Homology

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BLAST of CmaCh15G007810 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.9e-95
Identity = 168/175 (96.00%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGF+VA+TGIENIGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAT 176
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAT
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAT 175

[Close]

BLAST of CmaCh15G007810 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 8.1e-91
Identity = 160/176 (90.91%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGF+VAITGI+ IGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           +GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDPA A
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmaCh15G007810 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-52
Identity = 91/172 (52.91%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MF+HI L+  + LHPR+FG NL   +  KL  +VEGTC+G++GF++A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 172
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of CmaCh15G007810 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-52
Identity = 92/172 (53.49%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MF+HI L+  + LHPR+FG NL   +  KL  +VEGTC+G++GF++A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 172
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of CmaCh15G007810 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-52
Identity = 91/172 (52.91%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MF+HI L+  + LHPR+FG NL   +  KL  +VEGTC+G++GF++A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 172
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of CmaCh15G007810 vs. ExPASy TrEMBL
Match: A0A6J1JWX8 (DNA-directed RNA polymerase II subunit RPB7 OS=Cucurbita maxima OX=3661 GN=LOC111489078 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.1e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS
Sbjct: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 176

[Close]

BLAST of CmaCh15G007810 vs. ExPASy TrEMBL
Match: A0A6J1FGH6 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGF+VAITGIENIGKGLIS
Sbjct: 73  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 132

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 133 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 192

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA A
Sbjct: 193 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 248

[Close]

BLAST of CmaCh15G007810 vs. ExPASy TrEMBL
Match: A0A6J1FFB3 (DNA-directed RNA polymerase II subunit RPB7 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGF+VAITGIENIGKGLIS
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA A
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmaCh15G007810 vs. ExPASy TrEMBL
Match: A0A6P3Z9J4 (DNA-directed RNA polymerase II subunit RPB7 OS=Ziziphus jujuba OX=326968 GN=LOC107410895 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 4.8e-94
Identity = 170/176 (96.59%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIV++RNMQLHPRHFGRNLREN+VSKLMKDVEGTCSGRHGF+VAITGIENIGKGLI 
Sbjct: 1   MFFHIVMERNMQLHPRHFGRNLRENIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 176

[Close]

BLAST of CmaCh15G007810 vs. ExPASy TrEMBL
Match: A0A6J0ZV58 (DNA-directed RNA polymerase II subunit RPB7 OS=Herrania umbratica OX=108875 GN=LOC110412415 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.2e-94
Identity = 170/176 (96.59%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGF+VAITGIEN+GKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP TA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTA 176

[Close]

BLAST of CmaCh15G007810 vs. NCBI nr
Match: XP_022992875.1 (DNA-directed RNA polymerase II subunit RPB7 [Cucurbita maxima] >XP_022992876.1 DNA-directed RNA polymerase II subunit RPB7 [Cucurbita maxima])

HSP 1 Score: 359.0 bits (920), Expect = 2.3e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS
Sbjct: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 176

[Close]

BLAST of CmaCh15G007810 vs. NCBI nr
Match: XP_022939214.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 355.5 bits (911), Expect = 2.6e-94
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGF+VAITGIENIGKGLIS
Sbjct: 73  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 132

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 133 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 192

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA A
Sbjct: 193 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 248

[Close]

BLAST of CmaCh15G007810 vs. NCBI nr
Match: XP_022939221.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X3 [Cucurbita moschata])

HSP 1 Score: 355.5 bits (911), Expect = 2.6e-94
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGF+VAITGIENIGKGLIS
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA A
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmaCh15G007810 vs. NCBI nr
Match: KAG6579070.1 (hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355.5 bits (911), Expect = 2.6e-94
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGF+VAITGIENIGKGLIS
Sbjct: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA A
Sbjct: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 260

[Close]

BLAST of CmaCh15G007810 vs. NCBI nr
Match: KAF3454638.1 (hypothetical protein FNV43_RR05086 [Rhamnella rubrinervis])

HSP 1 Score: 355.1 bits (910), Expect = 3.4e-94
Identity = 172/176 (97.73%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGF+VAITGIENIGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 176

[Close]

BLAST of CmaCh15G007810 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 334.3 bits (856), Expect = 5.8e-92
Identity = 160/176 (90.91%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
           MFFHIVL+RNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGF+VAITGI+ IGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 177
           +GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDPA A
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmaCh15G007810 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-14
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 43  GFIVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAG 102
           G+++  T +ENIG+G I + TG + FPV +  + F+ FKGEI+  +V  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 103 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 162
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 163 TIKDDFLG 169
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of CmaCh15G007810 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 41/132 (31.06%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 43  GFIVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAG 102
           G+ VA+T ++ IG+G I + TG V FPV +  + F+ FKGEI+  +V  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 103 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 162
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 163 TIKDDFLGVIND 173
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

[Close]

BLAST of CmaCh15G007810 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.5e-04
Identity = 25/87 (28.74%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
          MF+   L+ ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]

BLAST of CmaCh15G007810 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 42.4 bits (98), Expect = 4.5e-04
Identity = 25/87 (28.74%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60
          MF+   L+ ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1  MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61 DGTGFVTFPVKYQCVVFRPFKGEILEA 88
           G G  T+ V  + VVFRPF GE++ A
Sbjct: 61 PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of CmaCh15G007810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	1.9e-95	96.00	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	8.1e-91	90.91	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	3.3e-52	52.91	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	3.3e-52	53.49	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	3.3e-52	52.91	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of CmaCh15G007810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JWX8	1.1e-95	100.00	DNA-directed RNA polymerase II subunit RPB7 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FGH6	1.3e-94	98.30	DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1FFB3	1.3e-94	98.30	DNA-directed RNA polymerase II subunit RPB7 isoform X3 OS=Cucurbita moschata OX=...	[more]
A0A6P3Z9J4	4.8e-94	96.59	DNA-directed RNA polymerase II subunit RPB7 OS=Ziziphus jujuba OX=326968 GN=LOC1...	[more]
A0A6J0ZV58	6.2e-94	96.59	DNA-directed RNA polymerase II subunit RPB7 OS=Herrania umbratica OX=108875 GN=L...	[more]

BLAST of CmaCh15G007810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992875.1	2.3e-95	100.00	DNA-directed RNA polymerase II subunit RPB7 [Cucurbita maxima] >XP_022992876.1 D...	[more]
XP_022939214.1	2.6e-94	98.30	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucurbita moschata]	[more]
XP_022939221.1	2.6e-94	98.30	DNA-directed RNA polymerase II subunit RPB7 isoform X3 [Cucurbita moschata]	[more]
KAG6579070.1	2.6e-94	98.30	hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF3454638.1	3.4e-94	97.73	hypothetical protein FNV43_RR05086 [Rhamnella rubrinervis]	[more]

BLAST of CmaCh15G007810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	5.8e-92	90.91	DNA-directed RNA polymerase II	[more]
AT3G22900.1	3.7e-14	33.59	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT4G14660.1	1.4e-13	31.06	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G06790.2	4.5e-04	28.74	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	4.5e-04	28.74	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 9..64 e-value: 2.0E-12 score: 47.2
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..80 e-value: 4.4E-28 score: 99.4
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 78..156 e-value: 1.5E-16 score: 60.4
None	No IPR available	GENE3D	2.40.50.140		coord: 81..171 e-value: 8.6E-37 score: 127.0
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 1..176
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 2..81 e-value: 2.62456E-39 score: 126.913
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 81..168 e-value: 4.31437E-46 score: 144.326
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..176
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 79..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G007810.1	CmaCh15G007810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding