CmaCh15G007490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G007490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr15: 3656546 .. 3658026 (+)
RNA-Seq Expression	CmaCh15G007490
Synteny	CmaCh15G007490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGACTGGAGAAAAGGAGAAATGGGTAAATTTACATGGCGAAATGAGTTGGTCCAGTTGGGCCGAGTCGGTGGACAATTCAAGACCGTCTCTCACCAACTTACGTTACCCTTCACGCGCCAGTGGAGAACCTTCCAGATTCTCTCTCTCCGTCGCTTTATTTTCCGATTCTTGAATTCTCAAACAAGCTTGTTCTAGGGTTTTTCCGCCCCTTGCTTTGCTCAATTCGGCTTCAGCGCTCAATTTCTCCGAGGTATGCGTGTGTACCTTGTTCCGTCTATGTTGTCTGCTTTCGTTTTCCAGTCTGGCGAGATGCTTTGCTGGAAACGGTCTTGGAACATCTTAATTATGGTAACTTTTGCAGTATTTGCAGAGATAATTTCTTTCGGTTGCTTTACTGGTTGCATTTGCGTACGCCTGCCCTAAACAATCCCTCGAGCGACCGCCGGACTCCGGACGCTTCAGGTGCTATTTCCTTCTTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTACTCTCTATCTTTTTACTTCAGGCGTCAGATTATACGTTACTTTTTGGTTGTGAGATTCTAGGTACTGATTGTCTTGCGTGGTTTTTTCTTTAAGGAAAGTTGTTCCTTGGATGCTGTAGTCAGTTTTCTAGCTGCGGTAGTAGGATATTTAGTATTTGTTGGAGTTCTTCTAGTTTTGATCGTTTTGGAATCAAAATTTTATTTGATCTGATTGGGATCGAGCTACTTAGTTTCACTACTCTAATTTTCTCTGTCGTAAGGAGGAAAATAAAGGCAGCTCGTTGGAATTGAATCCTCGGTTGACTTAACGGGAAAGAGATCAAATGTGTTGAGTGCTGGTTTTTTACTGTCTGCTTTGTGATCGTGTAGTTGCAACATTTTTCCATTTTTTTTGTAGTTAGCTTTGAGGCTCCTTGTTTGGCTCTCTGTTTATATGTCCTCTCCCCTGATTTTGTAATATTTCATTCTCTCCACGAAAGCTCAATTCTTATTAGAAAAATAGAGTCTCAAAACTTTTATGATATTTTCCTTGCTAATTGCTGGCTTTTTTTTCTTTTTCCTTGAATGCGACTGTGACTGTTTACTGTTTATTTTATCAACATTTAGATTCTACTAGGCCTTCTGTTTTGTATACTGCTTGTGCTGTGTTGCTAATACTTATCTCTTGTATTATGAGCAGGGTTGGGCTGCACTGAGTTGAATTCTAGTGTTTTCTGA

mRNA sequence

ATGCCAGACTGGAGAAAAGGAGAAATGGTGGAGAACCTTCCAGATTCTCTCTCTCCGTCGCTTTATTTTCCGATTCTTGAATTCTCAAACAAGCTTGTTCTAGGGTTTTTCCGCCCCTTGCTTTGCTCAATTCGGCTTCAGCGCTCAATTTCTCCGAGTATTTGCAGAGATAATTTCTTTCGGTTGCTTTACTGGTTGCATTTGCGTACGCCTGCCCTAAACAATCCCTCGAGCGACCGCCGGACTCCGGACGCTTCAGGGTTGGGCTGCACTGAGTTGAATTCTAGTGTTTTCTGA

Coding sequence (CDS)

ATGCCAGACTGGAGAAAAGGAGAAATGGTGGAGAACCTTCCAGATTCTCTCTCTCCGTCGCTTTATTTTCCGATTCTTGAATTCTCAAACAAGCTTGTTCTAGGGTTTTTCCGCCCCTTGCTTTGCTCAATTCGGCTTCAGCGCTCAATTTCTCCGAGTATTTGCAGAGATAATTTCTTTCGGTTGCTTTACTGGTTGCATTTGCGTACGCCTGCCCTAAACAATCCCTCGAGCGACCGCCGGACTCCGGACGCTTCAGGGTTGGGCTGCACTGAGTTGAATTCTAGTGTTTTCTGA

Protein sequence

MPDWRKGEMVENLPDSLSPSLYFPILEFSNKLVLGFFRPLLCSIRLQRSISPSICRDNFFRLLYWLHLRTPALNNPSSDRRTPDASGLGCTELNSSVF

Homology

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BLAST of CmaCh15G007490 vs. NCBI nr
Match: KAG7016561.1 (hypothetical protein SDJN02_21671, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 53/78 (67.95%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 11  ENLPDSLSPSLYFPILEFSNKLVLGFFRPLLCSIRLQRSISPSICRDNFFRLLYWLHLRT 70
           ENLPDSLSPSLYFPILEFSNKLVLG                     DNFFRLLYWLHLRT
Sbjct: 72  ENLPDSLSPSLYFPILEFSNKLVLG---------------------DNFFRLLYWLHLRT 128

Query: 71  PALNNPSSDRR-TPDASG 88
           PALNNPSSD R  P ASG
Sbjct: 132 PALNNPSSDHRPPPPASG 128

The following BLAST results are available for this feature:

BLAST of CmaCh15G007490 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh15G007490 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh15G007490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016561.1	1.6e-16	67.95	hypothetical protein SDJN02_21671, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh15G007490 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G007490.1	CmaCh15G007490.1	mRNA