CmaCh15G006750 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G006750
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRieske domain-containing protein
LocationCma_Chr15: 3235102 .. 3235357 (-)
RNA-Seq ExpressionCmaCh15G006750
SyntenyCmaCh15G006750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGCAACGAAGGGTCCTTGAAAGAGCGGCTGGTGGCGTCGATTGATCGGAAATTGGGGGCGGAGAGAACGACCGAGGGAAAAAGAGGTTACAGTTGTTGCAGTGCATCAGTGGCTCTTTTCCCGGCCACCGCCACACCGGAACAAAGAAAAGCTTCAGAACTTTCTCATAGTTAACGAGATCGGCAGGCGAGTTGCAGTTTATGCACCGGCCGGCGGCGGATTTGAGGAGCTGGCGAACTTGTTGCTCTAA

mRNA sequence

ATGAACGGCAACGAAGGGTCCTTGAAAGAGCGGCTGGTGGCGTCGATTGATCGGAAATTGGGGGCGGAGAGAACGACCGAGGGAAAAAGAGTGCATCAGTGGCTCTTTTCCCGGCCACCGCCACACCGGAACAAAGAAAAGCTTCAGAACTTTCTCATAGTTAACGAGATCGGCAGGCGAGTTGCAGTTTATGCACCGGCCGGCGGCGGATTTGAGGAGCTGGCGAACTTGTTGCTCTAA

Coding sequence (CDS)

ATGAACGGCAACGAAGGGTCCTTGAAAGAGCGGCTGGTGGCGTCGATTGATCGGAAATTGGGGGCGGAGAGAACGACCGAGGGAAAAAGAGTGCATCAGTGGCTCTTTTCCCGGCCACCGCCACACCGGAACAAAGAAAAGCTTCAGAACTTTCTCATAGTTAACGAGATCGGCAGGCGAGTTGCAGTTTATGCACCGGCCGGCGGCGGATTTGAGGAGCTGGCGAACTTGTTGCTCTAA

Protein sequence

MNGNEGSLKERLVASIDRKLGAERTTEGKRVHQWLFSRPPPHRNKEKLQNFLIVNEIGRRVAVYAPAGGGFEELANLLL
Homology
[Close]
BLAST of CmaCh15G006750 vs. ExPASy TrEMBL
Match: A0A498I3G3 (Rieske domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_042778 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 31  VHQWLFSRPPPHRNKEKLQNFLIVNEIGRRVAVYAPAGGGFEELANLLL 80
           VH  LF RP PH ++E+LQN L++++I RR A YAPA  GF+ L +LLL
Sbjct: 572 VHDRLFPRPTPHGDEEELQNLLVLHQIRRRPARYAPARAGFQYLPHLLL 620

[Close]
BLAST of CmaCh15G006750 vs. NCBI nr
Match: RXH75991.1 (hypothetical protein DVH24_042778 [Malus domestica])

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-05
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 31  VHQWLFSRPPPHRNKEKLQNFLIVNEIGRRVAVYAPAGGGFEELANLLL 80
           VH  LF RP PH ++E+LQN L++++I RR A YAPA  GF+ L +LLL
Sbjct: 572 VHDRLFPRPTPHGDEEELQNLLVLHQIRRRPARYAPARAGFQYLPHLLL 620

The following BLAST results are available for this feature:
BLAST of CmaCh15G006750 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G006750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A498I3G31.4e-0555.10Rieske domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_042778 PE=4... [more]
BLAST of CmaCh15G006750 vs. NCBI nr
Match NameE-valueIdentityDescription
RXH75991.12.9e-0555.10hypothetical protein DVH24_042778 [Malus domestica][more]
BLAST of CmaCh15G006750 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G006750.1CmaCh15G006750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009536 plastid
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity