CmaCh15G006160 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G006160
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 2915630 .. 2916106 (-)
RNA-Seq ExpressionCmaCh15G006160
SyntenyCmaCh15G006160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTTCAGCCACCAGAAAGCGAAAGATGAAGAAGCCGCCGGCGCCGCCGAGGGCCGCCAAAGCCCAACCGGCGGCGAAAAGAAGGACCAATGATAAGTCGAAGAAAATCATTGAAGTAGAAGAAGACGCCTCAGAGTTAAGGCACATGGTTCAATTCCCTGGCAGCAGTAGCAGCCGCTCCGACTCCGATTCCGACCACCCTTCTACTTCCACTTCCACTTCTACTTCTTCTTCCACTTTTTCCGATGGCCGGAATGGTTTGTCACAGTCGTCGGAAGAACTCAGCGTTTATGATTACGAGGGCTGGGAAGACCCTCTTGTAATTGTAAATCCACGGCCCTCTCCCGGAATTCCTCCCTTAACAACGTATTCCGGTTTTGATTACTCCGGTTTGGTTTATCCACTTCCGCCGGTTTTCAAGAACCCTCTGCCTCCACTTTACTACCGACCCAAATTTCCCGACCCCCATTAA

mRNA sequence

ATGGATTCTTCAGCCACCAGAAAGCGAAAGATGAAGAAGCCGCCGGCGCCGCCGAGGGCCGCCAAAGCCCAACCGGCGGCGAAAAGAAGGACCAATGATAAGTCGAAGAAAATCATTGAAGTAGAAGAAGACGCCTCAGAGTTAAGGCACATGGTTCAATTCCCTGGCAGCAGTAGCAGCCGCTCCGACTCCGATTCCGACCACCCTTCTACTTCCACTTCCACTTCTACTTCTTCTTCCACTTTTTCCGATGGCCGGAATGGTTTGTCACAGTCGTCGGAAGAACTCAGCGTTTATGATTACGAGGGCTGGGAAGACCCTCTTGTAATTGTAAATCCACGGCCCTCTCCCGGAATTCCTCCCTTAACAACGTATTCCGGTTTTGATTACTCCGGTTTGGTTTATCCACTTCCGCCGGTTTTCAAGAACCCTCTGCCTCCACTTTACTACCGACCCAAATTTCCCGACCCCCATTAA

Coding sequence (CDS)

ATGGATTCTTCAGCCACCAGAAAGCGAAAGATGAAGAAGCCGCCGGCGCCGCCGAGGGCCGCCAAAGCCCAACCGGCGGCGAAAAGAAGGACCAATGATAAGTCGAAGAAAATCATTGAAGTAGAAGAAGACGCCTCAGAGTTAAGGCACATGGTTCAATTCCCTGGCAGCAGTAGCAGCCGCTCCGACTCCGATTCCGACCACCCTTCTACTTCCACTTCCACTTCTACTTCTTCTTCCACTTTTTCCGATGGCCGGAATGGTTTGTCACAGTCGTCGGAAGAACTCAGCGTTTATGATTACGAGGGCTGGGAAGACCCTCTTGTAATTGTAAATCCACGGCCCTCTCCCGGAATTCCTCCCTTAACAACGTATTCCGGTTTTGATTACTCCGGTTTGGTTTATCCACTTCCGCCGGTTTTCAAGAACCCTCTGCCTCCACTTTACTACCGACCCAAATTTCCCGACCCCCATTAA

Protein sequence

MDSSATRKRKMKKPPAPPRAAKAQPAAKRRTNDKSKKIIEVEEDASELRHMVQFPGSSSSRSDSDSDHPSTSTSTSTSSSTFSDGRNGLSQSSEELSVYDYEGWEDPLVIVNPRPSPGIPPLTTYSGFDYSGLVYPLPPVFKNPLPPLYYRPKFPDPH
Homology
BLAST of CmaCh15G006160 vs. ExPASy TrEMBL
Match: A0A5D3DJD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00240 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 67/188 (35.64%), Postives = 84/188 (44.68%), Query Frame = 0

Query: 6   TRKRKMKKPPAPPRAAKAQPAAKRRTNDKSKKIIEVEEDASELRHMV-QFPGSSSSRSDS 65
           +RKRK+K+ P PPR  KA             K IEVEE    L +MV QF   S S    
Sbjct: 7   SRKRKLKRSPQPPRPTKA-------------KTIEVEE-PDGLGYMVEQFLTGSGSGGSI 66

Query: 66  DSDHPSTSTS------------TSTSSSTFSDGRNGLS------QSSEELSVYDYEGWED 125
              +PS+S+             + T  S      N  +       S EELS+YDY GWE+
Sbjct: 67  PDHYPSSSSDDREDQYVPMGILSPTPISLPPVSPNAFTSTLLAPSSEEELSIYDYGGWEE 126

Query: 126 PLVIVNPRP---SPGIPP-------LTTYSGFDYSGLVYP------LPPVFKNPLPPLYY 159
                 P P   S  I P       L+ ++  +    VYP      LPP+FK PLPPLYY
Sbjct: 127 AATGTVPYPILESSVIDPNNYNNGGLSNWNSSNLEPFVYPEPMSYSLPPIFKTPLPPLYY 180

BLAST of CmaCh15G006160 vs. NCBI nr
Match: KAG6578907.1 (hypothetical protein SDJN03_23355, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.8 bits (665), Expect = 7.8e-66
Identity = 145/160 (90.62%), Postives = 148/160 (92.50%), Query Frame = 0

Query: 1   MDSSATRKRKMKKPPAPPRAAKAQPAAKRRTNDKSKKIIEVEEDASELRHMVQFPGSSSS 60
           M+SSATRKRKMKKPPAPPRAAKAQ  AK R   KSKKIIEVEEDASE RHMV+FPGSSSS
Sbjct: 1   MESSATRKRKMKKPPAPPRAAKAQAPAKIR---KSKKIIEVEEDASEFRHMVRFPGSSSS 60

Query: 61  RSDSDSDHP--STSTSTSTSSSTFSDGRNGLSQSSEELSVYDYEGWEDPLVIVNPRPSPG 120
           RSDSDSD P  STSTSTSTSSSTFSDGRNGLS SSEELSVYDYEGWEDPLVIVNPRPS G
Sbjct: 61  RSDSDSDRPSTSTSTSTSTSSSTFSDGRNGLSPSSEELSVYDYEGWEDPLVIVNPRPSSG 120

Query: 121 IPPLTTYSGFDYSGLVYPLPPVFKNPLPPLYYRPKFPDPH 159
           IPPLTTYSGFDYSGLVYPLPPVFKNPLPPLYYRPKFPDP+
Sbjct: 121 IPPLTTYSGFDYSGLVYPLPPVFKNPLPPLYYRPKFPDPN 157

BLAST of CmaCh15G006160 vs. NCBI nr
Match: KAE8647158.1 (hypothetical protein Csa_018821 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-07
Identity = 67/197 (34.01%), Postives = 87/197 (44.16%), Query Frame = 0

Query: 1   MDSSATRKRKMKKPPAPPRAAKAQPAAKRRTNDKSKKIIEVEEDASELRHMVQFPGSSSS 60
           ++S  +RKRK+K PP PPRA +A             K IEVEE       + Q    S S
Sbjct: 2   LNSPKSRKRKLKTPPQPPRATRA-------------KTIEVEEPDGFGYMVEQLLFGSGS 61

Query: 61  RSDSDSDHPSTSTST-------------------STSSSTFSDGRNGLSQSSEELSVYDY 120
              S +DHPS+S++T                     S + F+      S S  ELS++DY
Sbjct: 62  SGGSITDHPSSSSNTPRDEYVPMGILSPTPISLPPVSPNDFTSTPLAPSTSEGELSIHDY 121

Query: 121 EGWEDPLVIVNPRP---SPGIPPLTTYSG-----------------FDY-SGLVYPLPPV 158
            GWE+    +   P   S  I P    +G                 F Y   ++YPLPP+
Sbjct: 122 GGWEEAATGMVAYPFLESSFIDPNNNNNGGLSSSNSSSSSNSNLEPFVYPESMLYPLPPI 181

BLAST of CmaCh15G006160 vs. NCBI nr
Match: KAA0058917.1 (hypothetical protein E6C27_scaffold98G00860 [Cucumis melo var. makuwa] >TYK23713.1 hypothetical protein E5676_scaffold1607G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-05
Identity = 67/188 (35.64%), Postives = 84/188 (44.68%), Query Frame = 0

Query: 6   TRKRKMKKPPAPPRAAKAQPAAKRRTNDKSKKIIEVEEDASELRHMV-QFPGSSSSRSDS 65
           +RKRK+K+ P PPR  KA             K IEVEE    L +MV QF   S S    
Sbjct: 7   SRKRKLKRSPQPPRPTKA-------------KTIEVEE-PDGLGYMVEQFLTGSGSGGSI 66

Query: 66  DSDHPSTSTS------------TSTSSSTFSDGRNGLS------QSSEELSVYDYEGWED 125
              +PS+S+             + T  S      N  +       S EELS+YDY GWE+
Sbjct: 67  PDHYPSSSSDDREDQYVPMGILSPTPISLPPVSPNAFTSTLLAPSSEEELSIYDYGGWEE 126

Query: 126 PLVIVNPRP---SPGIPP-------LTTYSGFDYSGLVYP------LPPVFKNPLPPLYY 159
                 P P   S  I P       L+ ++  +    VYP      LPP+FK PLPPLYY
Sbjct: 127 AATGTVPYPILESSVIDPNNYNNGGLSNWNSSNLEPFVYPEPMSYSLPPIFKTPLPPLYY 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJD11.7e-0535.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG6578907.17.8e-6690.63hypothetical protein SDJN03_23355, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647158.16.3e-0734.01hypothetical protein Csa_018821 [Cucumis sativus][more]
KAA0058917.13.4e-0535.64hypothetical protein E6C27_scaffold98G00860 [Cucumis melo var. makuwa] >TYK23713... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G006160.1CmaCh15G006160.1mRNA