CmaCh15G006140 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G006140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 2906175 .. 2906751 (-)
RNA-Seq ExpressionCmaCh15G006140
SyntenyCmaCh15G006140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCTTCGCGGTGGCGGTAAATACGTTGTTTAGCGAAATTTCTATTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTGGGTTTTTAATTGATTTTCTTCTTTTTCCCGTCTTTGACTCTGTAATTGTACAGACTTCCGACTACGTCTTTTCTCTCTCTAGACTCCTTTGTCTCCTCCGTCGGGTTTTCTCTTTGCTCTGTCTCCGGCGGCCTCGAGGACTTGAGTATTTCCGCCGTCGGGAGCGGGTTCTTTGCGGTGAAGGCATCCTTGCTTTCCGAGAAGCTGCTTTGGAGGCTGTATTTCAGTTTTTGGTTCTCATTCTAAGAGCTTAAGCTGAGGTCCTGAGGATGTTTTTGACTCAGTGTTTCGAATGGAGATTCTAGGAGTTTGGCTTCGAAGGAGCGTGACAGATCTACAAGGCTTTCGGGGAAGGACGAGGGGGAGGGAGCTGGGAAATTTTGTTTTTGTTTGTCAGTAGTGTGTTTTAGAGAGAAAGAGAAAGAGAAGAAGCTCTGCGGTGGGCCTGATATGACCGTTGATGTTAGTGTACGGAATATTTAG

mRNA sequence

ATGTTTTCTTCGCGGTGGCGACTTCCGACTACGTCTTTTCTCTCTCTAGACTCCTTTGTCTCCTCCGTCGGGTTTTCTCTTTGCTCTGTCTCCGGCGGCCTCGAGGACTTGAGTATTTCCGCCGTCGGGAGCGGGTTCTTTGCGGTGAAGGCATCCTTGCTTTCCGAGAAGCTGCTTTGGAGGCTAGAGAAAGAGAAAGAGAAGAAGCTCTGCGGTGGGCCTGATATGACCGTTGATGTTAGTGTACGGAATATTTAG

Coding sequence (CDS)

ATGTTTTCTTCGCGGTGGCGACTTCCGACTACGTCTTTTCTCTCTCTAGACTCCTTTGTCTCCTCCGTCGGGTTTTCTCTTTGCTCTGTCTCCGGCGGCCTCGAGGACTTGAGTATTTCCGCCGTCGGGAGCGGGTTCTTTGCGGTGAAGGCATCCTTGCTTTCCGAGAAGCTGCTTTGGAGGCTAGAGAAAGAGAAAGAGAAGAAGCTCTGCGGTGGGCCTGATATGACCGTTGATGTTAGTGTACGGAATATTTAG

Protein sequence

MFSSRWRLPTTSFLSLDSFVSSVGFSLCSVSGGLEDLSISAVGSGFFAVKASLLSEKLLWRLEKEKEKKLCGGPDMTVDVSVRNI
Homology
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BLAST of CmaCh15G006140 vs. NCBI nr
Match: KAG6578905.1 (hypothetical protein SDJN03_23353, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 62/101 (61.39%), Postives = 63/101 (62.38%), Query Frame = 0 

Query: 20  VSSVGFSLCSVSGGLEDLSISAVGSGFFAVKASLLSEKLLWRL----------------- 79
           VSSVGFSLCSVSG LEDLSISAVGSG FAVKASLLSEKLLWRL                 
Sbjct: 100 VSSVGFSLCSVSGSLEDLSISAVGSGLFAVKASLLSEKLLWRLTLASKERDRSTRLSGKD 159

Query: 80  ------------------EKEKEKKLCGGPDMTVDVSVRNI 86
                             E+E EKKLCGGPDMTVDVSVRNI
Sbjct: 160 EGEGAGKFCSCLSVVCFRERELEKKLCGGPDMTVDVSVRNI 200

The following BLAST results are available for this feature:
BLAST of CmaCh15G006140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G006140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578905.11.5e-1861.39hypothetical protein SDJN03_23353, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh15G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G006140.1CmaCh15G006140.1mRNA