CmaCh15G005990 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G005990
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionU6 snRNA-associated Sm-like protein LSm3
LocationCma_Chr15: 2839672 .. 2845076 (+)
RNA-Seq ExpressionCmaCh15G005990
SyntenyCmaCh15G005990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGAAATAATGATTTGTATTGGGCTATTGAGGCTGGCATTTTGGTTATGGACTGAAATTCGGTTTCGACCCAAACCGATGATTGTAGGGATGGGTGACTCATAAACCCCACTCCTCTTCAGTCTGCGAATACAGACCTTGGAGACAGCGGAAATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATAAGGTTGAGTCTTGATGAGCGTATTTACGTCAAGCTCCGCTCTGATCGTGAACTCCGCGGCAAACTCCATGTACACTACCCATATCCTTCTTCATTCCTTCTTCTTTTTCCAGTTTTTTTTTTTTTTTTTAATCTTCTCTGTTTCTTTTCTCTAATTATGTTATACATATTCCCCCTTCTAATCAAATGCCCCTAATTATTGAATTTTCTAGTTTTTTTTTTTCCTTTGATCAAATGAATAGTCGGAGAATTAGGGTTTTGTAATCGTTTTTAGTTACTTGATGGCTTTCCCTTGAAATTTGTTTGCATTCATTTCGTTGACAGTAAGCAATTAGCCTTTCTTCTATTGAGTTTTTGCGTTTGCGATGGGGCGGGCGTGGTTTCAAAGTTTTTTTAATTTTTAGGGATTGGAATTGTTTAAATTAGGAAGAATTGCCCTAACGGTGAAAAGTATTAGACGATAAAGTAGACGCATTCTACAGGGCCTCTGGTCTCACCTATTGGAAATTAAGCAGAAAGAAGATTATTCTAGTATGGTCTCCTTCTTATTCTCTATAGAGATGTAGTATTACGAAGGTGTTTCGTTTCATTTTCAACCGACACTCCAAATGTTACAAAGAACCACACCGCTAGCAGATATTTTGTTTTCTTTGGACTTCCCCTCAAGGTTTTAAAACGCATCTATTGAGGAGAGGTTTCCACACTGGAAGAATGTTTTGTTCCCTTCTCCAACTGATTTGGGATCTCACAATCCACCCCCTTGGAGCTTAGCGCGTCCTCGTTGACACACTGCCCAGTGTCTGGCTCTGATACCATATGTAACAATTCAAGCCCACCGCTAGCGGTTGATGTGGTATCTGCTACTGGTGGACTTTGACTGTTACAAATGGTATCAGAGGCAGACATTGGGCGGTATACCAGCGGGGACGTTGGACCCCCAAAAGAGTGTGAATTGTGAGATCTCATATTGGTTGGAGAGGAGAACAAACATTCCTTATAAGAGTGTGGAAACCTCTCCTTAATAGACGCGTTTTCAAACCTTGAAGGGAAAACCCAAACAGGATAATATCTACTAGCGTTAGTCTTGTGCGGTTATATTCCATGTGGAGATCTGGTTTTTTTTAACAATATCATTGTTACACTGGCTGGTCGGTTGTGTGATCCACTTATCCACAGATGCAGATTATGAGTAGTAACTGATGCCAGGACTCTTCTATTGCATTTTTAGTTTTGAGATGCTTTTGTGAATGTAAATTTTTCAGCTTTGATCTCTTCAATTTTATCGTCCATTACTGAGATTTACCTTTCCTGGAGTTTCAACTACTTTCTGTTGCCTGACTATCATGATGTTTTGCAGGCTTATGATCAACATCTTAATATGATTCTAGGCGATGTTGAAGAAATTGTTACTACTGTAGAAATTGATGACGAGACTTACGAAGAGATCGTTCGGGTATGCTCATTTTCTTGCATTAGTGTTGTTTGTAACTTTGTATCAATCCCTACTCTGCAGAAATAATTTTGAATACTAAGTTGGTCCCATTTTCAAGTAGATCAGGTGAGTTTACAGTAGTGAACACTGGATTACTAGTGTACAATGCGTTTTTAAAGGAAATAAATACTATTGCTCAAATGTTTGAATTTAAAAACCAAAGGAAAAGAATACCTTTGGTTCATTGTGTTCCTCAAGCTGGTTCATTGTGTCTATCCATACTTGATATTTTAACTCCAGCATTTCTCGTGTATATTTCAGTTGAGATTTCATATATTTGTCTACTTTCCTCTCCAGACTTCTAGGCGTACTGTCCCGTTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAGCTATCAGTTTGGAAGTTCATTTGCGTGCATCCTTAATGGCAACTTCTTGTTCGTCTTCTCTATCAAGTCGACTGGAGCAGGAACGATTGAGGATCCTACATACTCAGAACTTTCAAGAACTCAACTTCGTTCATAGATTAGGCTTATCCTTTAGTTGCTATGCTTATGCTGTTCTATTACATAAGATAGATAACTAGCTATTTGTTTTGATATATTGAGTAACTGTAGTTGTCTGACATTTTAATTGGCTGCACAAATTGAGTGAGTGTGCCTTCAGATTTTGTATACAAGGCCAAGTATACGCAATTTGAAATTGTGTTTCTAAGTCATAGAGAATCAAGCCTTGCTTGGTCTCTCTTTTTTTCTTTTTCCTGTTTTTCTTCTGTCTTCGTCCTTATGAAAAAACTTGTTTTTGTTGGATTCTTTGAACTCTGTGGCTCACTTTGACTTGTTTCATTTTGTTTCCAAGTAGATTTCATGCACAGTGACATGTACAACTATAATACAAACACACAACTAACACGAACACTATTCTACTCTACTATGAACGACCCTGTTTGATAACCTATATCATGGGGAAGTGGCTGCAAACTGGGGAGATGAGAAAAAAATGGGAACTACTATGATACTTTCCTATTGACTTTTCAGACCTATATATTTTATCAAACATATCTACGAAAGAATTACTCAGTAATAGACTTTGATAAAGAAGAAATAAAGATTACAAATTAATGAAACATACATTTCAATTTGTTCTTGAATATGAAAAATAGCTTTTCAATTCAGGTTATCATTATTTTACTGGGTCATAAACTATATTCAGATTTTCTATTCAAACCCACAGGAATTGATTTATTCGCCGATATTATTATAACATTTAAATCAGGCTTGTAAGGCAGGAATCAATAGTCCTGACCTGAAAACTGGACTGTCGACCAGCTCACCCAAATTAGTTTAGAGATGGTTGTGTCCCCTTAGTAAATATTCATTCTCCACAATCTCATGCCATAGTTTTCTTCATTAAATCAGAAATTTCTCCTCGGCACTTTATAGCAGCTTCAGTTTGCTCATGACAGAGAAGACAACTCATCTACAATTCAACTCCATTGATGCAAAACTAGTTGCTTTGAAGAGCTTAAACCAAAAGCTCCGCCCTGCCAAACTTTAGACAAATATTAAGTTGAAACATTCCATTTCCTGGATTACTATACTAATTCAGGTTTGGCATACAGACAGTTCCTGTAGTCATTTCGAAATGATAATGTTAAACGACGCTGACATAGTGATCAGATAAGCAGCAAATGATCTGCAGTAAAAAAAAAAAAAAATCTACAACCTATCAATACCATATTTACCATGATAAACGTTAGAAACGGTGAAACAAGGCGCTGCAAGGCTACGACAAACGACTATGAAAATTTAGAACTATAAGAAGTTCTAGCGAATCTGTGTAGGTCATGCAGAACCATCATCAAAGAGATACTGATAGAATCTTTTTCTTTCCTCTGGCTCAAGTAAACCTCCTAGATTGTTTCCTTGATCATCAAGATCATCTGGTTCAAAGTCTTTCCTCTTGTTTTTTTTTGATCTACCCAAAAGCATCCCCTTCATTCTCTTCTTTTCTAAATTCATCAAATGATGTCGCCTGTTATATTCATGAAGTCCCTCCTGCATCAGTTCTCCAAACCTCTCTTTTACAACCACTAGTGGATCTTTCTCAATTAGTTCTGATCCATTATACCCTTCTCTAAGAAGAACAGTGTAAATCTGATACTTGTTTGAGACATAGAATATGCCAGGGTGCTTAAGCAGCAACGCATTCAACTTCAATGGCAGACCGAATTCCCTGCTGAAATGTCCAAGCTTCATAATTGATGCTTTCTTCCATAATGTCAGCGACAATATCTCATGGATCAACCCCACTGTCCTCTTTTCCATCTCCTTTGTATCTTTCACCAACCCTGCATGGATCGCATATGGTGAAATATATGGAGAGGCATTAAATTCATGAAACTTTTCCCACGAATTTACCCAAGTCGTTGGCAGTGAGCAGGAGAAAGCTGGCTCAACCCCATGCTTGCAGGCTGAAGATTCTATGCTGGAAATTGCTAGTTCTGGTTTCCAAGAGACCAGTTCTATTTCCATTGAGTTTCTTTTTCCAGTATAATTTACAATTCGAAACATATCTGAATGTTTGGGAACGATTCTTATCAAGTAATCATCTGGGAGCCCAAAATTCCGCCTTAATTCACCAAGTTTTAAAACATTTAGTCTCTGATTCGAAGCCATCATCAGCAACTTTGCCAACCGCTCAACAAAAGCAGGCTCCTGCATATCTTTGACAGTTTCTTCCTCTTCAACTAAAGCCATCATCCTCTTTGTCAGCCGAAAATAGTACTCATCATCGTGGAGATAAACTTCAAAGCAGATTGGGTACTTTTTCAGCCAGTTAAGGGCTTTTCCTTGACAGTCGAGGGTTTTAAACTTCTTTTGGAGAAATTTTACAGGTGCCGTCTGATTGGGGCAACGAAGGACGATATTCTTGATTTGATTATTGACAATCCATCGACGATTACGAGATAGAGCTGATTCAAGGTCTGGGTCTTTCTTCATTGACCATAGAGAAAAGTTCCTTAGGAAGCATTTGAGGGAATAAGGAGAAGAAAGCCTAGGATCCCAATGCCTGGACTTCTGTAATACTTCAAACAACATCCTTATGCTATGGTTCTAATGCCATCATGTGTCTTGACTCTCGTAGCAGAGACAAGCCTGTTGGAAGATAATTAAAATGAACAGAACAAATAAGGAGATTCTAAATGAAACAAATAAAGAAGGAAAAAAAAGAAGTGCCACGAGAAAAGTAAATGAAAGCAATTAAACAGATTTACTATATTTAGTGCAATGCTGACTGAAACATTCCAATGGTGAAATTGAAAGGAACAAATAATATTTACAGCTAACAGAGCATTCAAACAACGGTTAGATCAAACAAACCAAAGGTGGATTGTCTGCAAGTTAATTAAGTTCTGAAATTCTATGTGAAGCAGTGGATATGAGTATCACGTCCATATGAAAGAAGATTTTATTTAAGATGTTTTTAATATCTACCAACACTTGAAGAATTCAAGGGAATATTTCCCAAGATTTTTTTTGTTTTTTCATTTAACAAGTCTCATGCTAGGAAGCTTGTTTGCATTGGAAAAGACATGGATCATAGAAACCTAGATTTATGAAATTTATGGTTGGTAATGTGCTTATAAAAGTTAGTTTGCATTGTAAAATGTAAATTTTATAGGCTCTAGTTTATGCAGTCGACCGGATTAGCAAACTTGTAA

mRNA sequence

GGTGAAATAATGATTTGTATTGGGCTATTGAGGCTGGCATTTTGGTTATGGACTGAAATTCGGTTTCGACCCAAACCGATGATTGTAGGGATGGGTGACTCATAAACCCCACTCCTCTTCAGTCTGCGAATACAGACCTTGGAGACAGCGGAAATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATAAGGTTGAGTCTTGATGAGCGTATTTACGTCAAGCTCCGCTCTGATCGTGAACTCCGCGGCAAACTCCATGCTTATGATCAACATCTTAATATGATTCTAGGCGATGTTGAAGAAATTGTTACTACTGTAGAAATTGATGACGAGACTTACGAAGAGATCGTTCGGACTTCTAGGCGTACTGTCCCGTTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTTCGACCGGATTAGCAAACTTGTAA

Coding sequence (CDS)

ATGGCGACCGAGGAAGAAAGCACTGTCAAGGAGCCGTTGGATCTCATAAGGTTGAGTCTTGATGAGCGTATTTACGTCAAGCTCCGCTCTGATCGTGAACTCCGCGGCAAACTCCATGCTTATGATCAACATCTTAATATGATTCTAGGCGATGTTGAAGAAATTGTTACTACTGTAGAAATTGATGACGAGACTTACGAAGAGATCGTTCGGACTTCTAGGCGTACTGTCCCGTTTCTTTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTTCGACCGGATTAGCAAACTTGTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTSTGLANL
Homology
[Close]
BLAST of CmaCh15G005990 vs. ExPASy Swiss-Prot
Match: Q9LMN4 (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.2e-43
Identity = 83/97 (85.57%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT 97

[Close]
BLAST of CmaCh15G005990 vs. ExPASy Swiss-Prot
Match: Q9C6K5 (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.1e-42
Identity = 85/97 (87.63%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97

[Close]
BLAST of CmaCh15G005990 vs. ExPASy Swiss-Prot
Match: Q32PE9 (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of CmaCh15G005990 vs. ExPASy Swiss-Prot
Match: P62310 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of CmaCh15G005990 vs. ExPASy Swiss-Prot
Match: P62311 (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-36
Identity = 71/89 (79.78%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 7   STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 66
           +TV+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDVEE VTT+EID+ETY
Sbjct: 12  NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETY 71

Query: 67  EEIVRTSRRTVPFLFVRGDGVILVSPPLR 96
           EEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  EEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]
BLAST of CmaCh15G005990 vs. ExPASy TrEMBL
Match: A0A6J1JZX1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC111489789 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.5e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of CmaCh15G005990 vs. ExPASy TrEMBL
Match: A0A6J1FGZ1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111445386 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.5e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of CmaCh15G005990 vs. ExPASy TrEMBL
Match: A0A6J1BV62 (U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC111006032 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.5e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of CmaCh15G005990 vs. ExPASy TrEMBL
Match: A0A0B0PV80 (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum OX=29729 GN=LOC108487517 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]
BLAST of CmaCh15G005990 vs. ExPASy TrEMBL
Match: A0A5D2RIL7 (U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium tomentosum OX=34277 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]
BLAST of CmaCh15G005990 vs. NCBI nr
Match: KAG9455091.1 (hypothetical protein H6P81_007995 [Aristolochia fimbriata])

HSP 1 Score: 187.2 bits (474), Expect = 7.1e-44
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
           MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI+TTVE
Sbjct: 843 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 902

Query: 61  IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTST 99
           IDDETYEEIVRTSRRT+PFLFVRGDGVILVSPPLRT+T
Sbjct: 903 IDDETYEEIVRTSRRTIPFLFVRGDGVILVSPPLRTAT 940

[Close]
BLAST of CmaCh15G005990 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_038886358.1 sm-like protein LSM3A [Benincasa hispida] >KAG6578889.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032866.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6602182.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187.2 bits (474), Expect = 7.1e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 97
          IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT
Sbjct: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRT 96

[Close]
BLAST of CmaCh15G005990 vs. NCBI nr
Match: XP_016719620.1 (sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like protein LSM3A [Gossypium arboreum] >KAB2093840.1 hypothetical protein ES319_A02G119900v1 [Gossypium barbadense] >TYH28285.1 hypothetical protein ES288_A02G132100v1 [Gossypium darwinii] >TYI39998.1 hypothetical protein ES332_A02G133700v1 [Gossypium tomentosum] >TYJ46483.1 hypothetical protein E1A91_A02G124400v1 [Gossypium mustelinum] >KAG4211549.1 hypothetical protein ERO13_A02G112705v2 [Gossypium hirsutum])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEE+STVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEDSTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]
BLAST of CmaCh15G005990 vs. NCBI nr
Match: XP_042459108.1 (sm-like protein LSM3A [Zingiber officinale] >XP_042464526.1 sm-like protein LSM3A isoform X4 [Zingiber officinale])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI+TTVE
Sbjct: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEILTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]
BLAST of CmaCh15G005990 vs. NCBI nr
Match: XP_021889077.1 (sm-like protein LSM3A [Carica papaya] >KAA8537892.1 hypothetical protein F0562_027528 [Nyssa sinensis] >KDP40389.1 hypothetical protein JCGZ_04208 [Jatropha curcas])

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          MATEEES VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
Sbjct: 1  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT+RRTVPFLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]
BLAST of CmaCh15G005990 vs. TAIR 10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 174.1 bits (440), Expect = 5.8e-44
Identity = 83/97 (85.57%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EE++TV+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE++TT+E
Sbjct: 1  MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTT 97

[Close]
BLAST of CmaCh15G005990 vs. TAIR 10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.2e-43
Identity = 85/97 (87.63%), Postives = 94/97 (96.91%), Query Frame = 0 

Query: 1  MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
          M+ EEE+TV+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TTVE
Sbjct: 1  MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60

Query: 61 IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTS 98
          IDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLRT+
Sbjct: 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97

[Close]
BLAST of CmaCh15G005990 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 14  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 73

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 74  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104

[Close]
BLAST of CmaCh15G005990 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 13  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 72

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 73  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 103

[Close]
BLAST of CmaCh15G005990 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.4e-07
Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 3   TEEESTVKEPLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 62
           TEEE     PL ++ +S+  + ++ +  R++R+L G++ A+D+H NM+L +V E+ T V 
Sbjct: 13  TEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVP 72

Query: 63  IDDETYEEIVRTSR-RTVPFLFVRGDGVILV 91
              +  ++ +  +R R +  +F+RGD VI+V
Sbjct: 73  KTGKGKKKALPVNRDRFISKMFLRGDSVIIV 103

The following BLAST results are available for this feature:
BLAST of CmaCh15G005990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LMN48.2e-4385.57Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1[more]
Q9C6K53.1e-4287.63Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1[more]
Q32PE93.3e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3[more]
P623103.3e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV... [more]
P623113.3e-3679.78U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S... [more]
BLAST of CmaCh15G005990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JZX13.5e-44100.00U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1FGZ13.5e-44100.00U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1BV623.5e-44100.00U6 snRNA-associated Sm-like protein LSm3 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A0B0PV801.0e-4396.91U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium arboreum OX=29729 GN=LOC10... [more]
A0A5D2RIL71.0e-4396.91U6 snRNA-associated Sm-like protein LSm3 OS=Gossypium tomentosum OX=34277 GN=LSM... [more]
BLAST of CmaCh15G005990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG9455091.17.1e-4495.92hypothetical protein H6P81_007995 [Aristolochia fimbriata][more]
XP_022133461.17.1e-44100.00sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3... [more]
XP_016719620.12.1e-4396.91sm-like protein LSM3A [Gossypium hirsutum] >XP_017647362.1 PREDICTED: sm-like pr... [more]
XP_042459108.12.1e-4396.91sm-like protein LSM3A [Zingiber officinale] >XP_042464526.1 sm-like protein LSM3... [more]
XP_021889077.13.5e-4396.91sm-like protein LSM3A [Carica papaya] >KAA8537892.1 hypothetical protein F0562_0... [more]
BLAST of CmaCh15G005990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G21190.15.8e-4485.57Small nuclear ribonucleoprotein family protein [more]
AT1G76860.12.2e-4387.63Small nuclear ribonucleoprotein family protein [more]
AT2G47640.14.4e-0732.97Small nuclear ribonucleoprotein family protein [more]
AT2G47640.24.4e-0732.97Small nuclear ribonucleoprotein family protein [more]
AT2G47640.34.4e-0732.97Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 14..92
e-value: 1.1E-19
score: 81.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 16..92
e-value: 1.4E-18
score: 66.4
NoneNo IPR availableGENE3D2.30.30.100coord: 2..94
e-value: 1.1E-29
score: 104.1
NoneNo IPR availablePANTHERPTHR13110:SF13U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 1..96
IPR040002U6 snRNA-associated Sm-like protein Lsm3PANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 1..96
IPR034105Sm-like protein Lsm3CDDcd01730LSm3coord: 11..92
e-value: 2.01152E-52
score: 157.002
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 11..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G005990.1CmaCh15G005990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0033962 P-body assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0000932 P-body
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding