CmaCh15G005440 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G005440
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 2540299 .. 2541954 (+)
RNA-Seq ExpressionCmaCh15G005440
SyntenyCmaCh15G005440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGAGCTAAAGACGGTATCGCAGCTCCTCGTCGTCGACCATGGAGGTTAGTTATTCTGGTCTCTTTTGGTGGATTTTGATTCCCTGTGTGTTCATCAGAAAAAAACAAATCATTGTATGTGGATCTGTTTAGGTTTGTAATGCACAATTCAATGCTTTCTTAAGATGACTGTGTAATAACTTTGAACTTTTGTCATGGTTTGTCTGGAACATTGGGATTCAATGGTCTGTTTCTTCAAATTCTGACCACTTTTTTCTTTTTGTGTTTCATCCTTCTTTTTTCTTATTAAAAAAAATAATAATAATTGTAACAGCAAAAGTTGTATTGAAACAGGCAGTAGATCGAAAAAAAGGGATTTTTTTTATTTAATTTTTATAGATAATCAAGTTTATATATATATATATGTATGTATGTATGTATATATATATATTATTATTTTATAATATATTCCATTTTCCATTTGGATTTTAACAAAAAAAAAAAATACATATAATAAACAACTTCTATGTCAAATTTATAATAATCATACAAATTTTGAATAAATATGAAAGTTTAAGAATTGAAAGATGTAATTATCGTGAATCGAAGTTAAAAAATATAAACATTTTTCTTCTCAAATCTTCTTGTATGGAGGGGAAAAGAAAAAATTGTGTCTTCCAAAATGGAATCTGATAAGTGAGATTTTGAGTAAGTGTTTACATAATCCTCCTATTCGAAGAAATGATTATTGAAATAATGAGTCACCATCAATATCGACACATCTGAGATTAGGAGTTCTGTTGTTCAATCCTTTTCCTTCTTCTTGTTGCTGTGTATCTCGTTCATACACATCTTCTCTTTGTTTCTCGAACCTATAGTGAGTTACATAGATAGAGCTCGAAAAGGTAAAATCTTTGATGATTCCATCATACATGATTGAGTTGCTAGAACTTTTGAATAGTTATCGCACACCTCAACTAAATTATTTCTCGTTAAAAAATCTCTTTCTAGTTGCTCTGAACAATTAATTTTTCTTCTCAAATCTTCTTATACAAAGGAGAAAAATACGAGAGCAAATTTGTACCGAGAACTCTCTCAATAGATTCTAAGAAGGATTGTGGGGATTCAATCAATAAGTAGCATAAATTTTAAAAATAATTTGTTTTTTTCCCTTAAAAAAAAAAAAAAAAAAAACTTGCTGGCATGGACTTTTATATTGAATGCCGTCGGTGAAGTGTTTACGTGTCAGCTCGTGATTGGGGGTTTTTTGCATAACTTGAGAAGCCCCAGTGTACTAGAGCATAACATCCAGCAACCAAAAAAAAAATTATTTTCCGGGAAAAAGAATTATTTTCTCGTTGGCGTTTGGTTTTCGAGAAAGTAAAAATTTTCTCGAGAAAACCCTACTCTTCCCCTAATGGAGCTTCACTGTTCATTATTCTTTTCACTTTCTTCGTCGTTGCCGCCCTACTGGCGATAATATGCTTCACGAATCCGCGATCTGATTCTCGCTCTTCAATCCATTTGCTGGATTTCGGTAACTTTTTTTTTTTTTTTTTTTTGTTTACTCTGTATTATTGATTTTTCTTAAGAGCTTTCCAGTTTCTAATATGATCATTTTGTTGCCTCAATCTCAGTTCCCTCCGTTGAACTTGTGCTGGACGGATCGTGA

mRNA sequence

ATGAAAAGAGCTAAAGACGGTATCGCAGCTCCTCGTCGTCGACCATGGAGGTTAGTTATTCTGGTCTCTTTTGTAAAAATTTTCTCGAGAAAACCCTACTCTTCCCCTAATGGAGCTTCACTGTTCATTATTCTTTTCACTTTCTTCGTCGTTGCCGCCCTACTGGCGATAATATGCTTCACGAATCCGCGATCTGATTCTCGCTCTTCAATCCATTTGCTGGATTTCGTTCCCTCCGTTGAACTTGTGCTGGACGGATCGTGA

Coding sequence (CDS)

ATGAAAAGAGCTAAAGACGGTATCGCAGCTCCTCGTCGTCGACCATGGAGGTTAGTTATTCTGGTCTCTTTTGTAAAAATTTTCTCGAGAAAACCCTACTCTTCCCCTAATGGAGCTTCACTGTTCATTATTCTTTTCACTTTCTTCGTCGTTGCCGCCCTACTGGCGATAATATGCTTCACGAATCCGCGATCTGATTCTCGCTCTTCAATCCATTTGCTGGATTTCGTTCCCTCCGTTGAACTTGTGCTGGACGGATCGTGA

Protein sequence

MKRAKDGIAAPRRRPWRLVILVSFVKIFSRKPYSSPNGASLFIILFTFFVVAALLAIICFTNPRSDSRSSIHLLDFVPSVELVLDGS
Homology
[Close]
BLAST of CmaCh15G005440 vs. NCBI nr
Match: KAG6578838.1 (Transcription factor MYB65, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 61/83 (73.49%), Postives = 63/83 (75.90%), Query Frame = 0 

Query: 5   KDGIAAPRRRPWRLVILVSFVKIFSRKPYSSPNGASLFIILFTFFVVAALLAIICFTNPR 64
           +DGIAAPRRRP          K F  K    PNGASLFII FTFFVVAALLAIICFTNPR
Sbjct: 486 EDGIAAPRRRPRS--------KNFLEKTLLFPNGASLFIIPFTFFVVAALLAIICFTNPR 545

Query: 65  SDSRSSIHLLDFVPSVELVLDGS 88
           SDSRSSIHL D VPS+ELVLDGS
Sbjct: 546 SDSRSSIHLPDSVPSLELVLDGS 560

[Close]
BLAST of CmaCh15G005440 vs. NCBI nr
Match: KAG7016367.1 (hypothetical protein SDJN02_21475, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-16
Identity = 51/62 (82.26%), Postives = 52/62 (83.87%), Query Frame = 0 

Query: 26 KIFSRKPYSSPNGASLFIILFTFFVVAALLAIICFTNPRSDSRSSIHLLDFVPSVELVLD 85
          K F  K    PNGASLFII FTFFVVAALLAIICFTNPRSDSRSSIHL D VPS+ELVLD
Sbjct: 1  KNFLEKTLLFPNGASLFIIPFTFFVVAALLAIICFTNPRSDSRSSIHLPDSVPSLELVLD 60

Query: 86 GS 88
          GS
Sbjct: 61 GS 62

The following BLAST results are available for this feature:
BLAST of CmaCh15G005440 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G005440 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G005440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578838.16.1e-2073.49Transcription factor MYB65, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7016367.13.1e-1682.26hypothetical protein SDJN02_21475, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh15G005440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G005440.1CmaCh15G005440.1mRNA