CmaCh15G005210 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G005210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ferredoxin
Location	Cma_Chr15: 2406548 .. 2407000 (+)
RNA-Seq Expression	CmaCh15G005210
Synteny	CmaCh15G005210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

mRNA sequence

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

Coding sequence (CDS)

ATGTCGGCTATCAATCTTCCAACATCTTGCCTGATCAAAAGTGCTACACCAAGGAGATCCTGTGCCCTAGTGCAGAGGCCATCTTCTTTGGGTTCTTTTAGGAGTGTATCCCGGGCATTTGGATTGAAGTCTTCTTCATTCAAAGTGACAGCAATGGCTACTACTTACAAAGTGAAATTGATTGGACCAAACGGTGAAGAGAATGAGTTTGAGGCCCCTGATGATGCTTACATTCTGGACTCAGCTGAGGATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGAGCTTGCTCTACTTGCGCCGGTCAAGTTGTTTCTGGGACAGTGGACCAATCAGATGGATCGTTCTTGGACGACAATCAAATGGAGAAGGGTTATGTCCTGACCTGCGTTGCATACCCACAATCCGACTGTGTCATCCACACACACAAGGAAGGTGATTTGTACTGA

Protein sequence

MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY

Homology

[Close]

BLAST of CmaCh15G005210 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.2e-48
Identity = 99/153 (64.71%), Postives = 118/153 (77.12%), Query Frame = 0


Query: 1   MSAINLPTSCLI--KSATPRRSCALVQRPSSLGSFRSVSRAFGLKSS-SFKVTAMATTYK 60
           MS     TSC +     T + S   V+ PSSL  F  V++   LK+S    V+AMA  YK
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMA-VYK 60

Query: 61  VKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSF 120
           VKL+GP GEE+EF+APDDAYILD+AE AG++LPYSCRAGACSTCAG++ SG+VDQSDGSF
Sbjct: 61  VKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSF 120

Query: 121 LDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           LDD Q E+GYVLTCV+YP+SDCVIHTHKEGDLY
Sbjct: 121 LDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of CmaCh15G005210 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-46
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTA-MATTYKVKLIGPNGE 67
           T  +++S T  +         S+GS + VSR+FGLK S+    A M+  YKVKL+GP+G+
Sbjct: 12  TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQ 71

Query: 68  ENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKG 127
           E+EFE  DD YILD+AE+AG+DLPYSCRAGACSTCAGQ+VSG VDQSDGSFL+D+ +EKG
Sbjct: 72  EDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKG 131

Query: 128 YVLTCVAYPQSDCVIHTHKEGDLY 151
           YVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 132 YVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CmaCh15G005210 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 53  ATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQ 112
           +  YKVKLIGP GEENEFE  DD +ILD+AE+AG+DLPYSCRAGACSTCAGQ+V G VDQ
Sbjct: 1   SAVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQ 60

Query: 113 SDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           S+GSFL+D+  EKG+VLTCVAYPQSDCVIHTHKE +L+
Sbjct: 61  SEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of CmaCh15G005210 vs. ExPASy Swiss-Prot
Match: P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-40
Identity = 78/124 (62.90%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 28  SSLGSFRSVSRAFGLK-SSSFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAG 87
           S  G  R  +RA G + SS F  +A A  +KVKL+GP+G E+EFEAPDD YIL++AE AG
Sbjct: 32  SFAGHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAG 91

Query: 88  LDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKE 147
           ++LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM +GY+LTC++YP++DCVIHTHKE
Sbjct: 92  VELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKE 151

Query: 148 GDLY 151
            DLY
Sbjct: 152 EDLY 155

[Close]

BLAST of CmaCh15G005210 vs. ExPASy Swiss-Prot
Match: P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-40
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 53  ATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQ 112
           +  YKVKLIGP+G+ENEF+ PDD YILD+AE+AG+DLPYSCRAGACSTCAG++  G VDQ
Sbjct: 1   SAVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQ 60

Query: 113 SDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           SDGSFL+D+  EKGYVLTCVAYPQSD VIHTHKE +L+
Sbjct: 61  SDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of CmaCh15G005210 vs. ExPASy TrEMBL
Match: A0A6J1K096 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111489026 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.2e-79
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of CmaCh15G005210 vs. ExPASy TrEMBL
Match: A0A6J1FEX9 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111444864 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.5e-77
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MSAINLPTSCLIKSATPRRSCALVQRPSSL S RSVSRAFGLKSSSFKVTAMATTYKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLRSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of CmaCh15G005210 vs. ExPASy TrEMBL
Match: A0A6J1JQ79 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 135/150 (90.00%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCLI++ATPR+SCALVQRPSSLGSFR+VSRAFGLKSSSFKV+AMA +YKVKL
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDD YILDSAE AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of CmaCh15G005210 vs. ExPASy TrEMBL
Match: A0A6J1E8R7 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.1e-70
Identity = 135/150 (90.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS + LPTSCLI++ATPR+SCALVQRPSSL SFRSVSRAFGLKSSSFKV+AMA +YKVKL
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDD YILDSAE AGLDLPYSCRAGACSTCAGQVVSGTVDQ+DGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
            QMEKGYVLTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QQMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of CmaCh15G005210 vs. ExPASy TrEMBL
Match: A0A6J1BZM5 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111006691 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 134/150 (89.33%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MS I+L TSC++KSATPRRS ALVQRPSSLG+FR+VSRAFGLKSSSF+V+AMA +YKVKL
Sbjct: 1   MSTISLSTSCMVKSATPRRSYALVQRPSSLGAFRNVSRAFGLKSSSFRVSAMA-SYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           NQMEKGY+LTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: XP_022992802.1 (ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022992803.1 ferredoxin, root R-B2-like [Cucurbita maxima])

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: KAG6578819.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MSAINLPTSCLIKSATPRRSCALVQRPSSLGS RSVSRAFGLKSSSFKVTAMATTYKVKL
Sbjct: 187 MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMATTYKVKL 246

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 247 IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 306

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 307 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 336

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: KAG7016344.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MSAINLPTSCLIKSATPRRSCALVQRPSSLGS RSVSRAFGLKSSSFKVTAMATTYKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: XP_022938723.1 (ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022938724.1 ferredoxin, root R-B2-like [Cucurbita moschata])

HSP 1 Score: 297.0 bits (759), Expect = 9.3e-77
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MSAINLPTSCLIKSATPRRSCALVQRPSSL S RSVSRAFGLKSSSFKVTAMATTYKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLRSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of CmaCh15G005210 vs. NCBI nr
Match: XP_023551682.1 (ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60
           MSAINLPTSCLIKSATPRRSCALVQRPSSLGS RSVSRAFGLKSSSFKVTAMA  YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMA-AYKVKL 60

Query: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120
           IGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEEAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 151
           NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of CmaCh15G005210 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 187.6 bits (475), Expect = 7.4e-48
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTA-MATTYKVKLIGPNGE 67
           T  +++S T  +         S+GS + VSR+FGLK S+    A M+  YKVKL+GP+G+
Sbjct: 12  TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQ 71

Query: 68  ENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQMEKG 127
           E+EFE  DD YILD+AE+AG+DLPYSCRAGACSTCAGQ+VSG VDQSDGSFL+D+ +EKG
Sbjct: 72  EDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKG 131

Query: 128 YVLTCVAYPQSDCVIHTHKEGDLY 151
           YVLTCVAYPQSDCVIHTHKE +L+
Sbjct: 132 YVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CmaCh15G005210 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 155.2 bits (391), Expect = 4.1e-38
Identity = 87/144 (60.42%), Postives = 106/144 (73.61%), Query Frame = 0


Query: 8   TSCLIKSATPRRSCALVQRPSSLGS--FRSVSRAFGLKSSSF---KVTAMATTYKVKLIG 67
           +S ++ ++  RR     Q P SL S  F +    FGLKSS+    +VTAMA TYKVK I 
Sbjct: 7   SSAIVSTSFLRRQ----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMA-TYKVKFIT 66

Query: 68  PNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQ 127
           P GE+ E E  +D Y+LD+AE+AGLDLPYSCRAG+CS+CAG+VVSG++DQSD SFLDD Q
Sbjct: 67  PEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQ 126

Query: 128 MEKGYVLTCVAYPQSDCVIHTHKE 147
           M +GYVLTCVAYP SD VI THKE
Sbjct: 127 MSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of CmaCh15G005210 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 85/147 (57.82%), Postives = 105/147 (71.43%), Query Frame = 0


Query: 8   TSCLIKSATPRRSCALVQRPSSLGSFRSVS--RAFGLKSSSF---KVTAMATTYKVKLIG 67
           +S ++ ++  RRS A    P SL S  S +    FGLKS +    +VTAMA TYKVK I 
Sbjct: 7   SSAIVGTSFIRRSPA----PISLRSLPSANTQSLFGLKSGTARGGRVTAMA-TYKVKFIT 66

Query: 68  PNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDNQ 127
           P G E E E  DD Y+LD+AE+AG+DLPYSCRAG+CS+CAG+VVSG+VDQSD SFLDD Q
Sbjct: 67  PEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQ 126

Query: 128 MEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           + +G+VLTC AYP SD  I THKE D+
Sbjct: 127 IGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of CmaCh15G005210 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-33
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 40  FGLKSS--SFKVTAMATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGA 99
           FGL SS  +F       + KVKLI P GEE E E  +D  IL+SAE+AGL+LPYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 100 CSTCAGQVVSGTVDQSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           C TC G++VSG VDQS GSFL++ Q++KGY+LTC+A P  DCV++THK+ DL
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of CmaCh15G005210 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 52  MATTYKVKLIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVD 111
           +A  YKV ++  +G+  E E   D  IL  A D+GLD+PY C  G C TC  ++V+GTVD
Sbjct: 49  IARAYKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVD 108

Query: 112 QSDGSFLDDNQMEKGYVLTCVAYPQSDCVIHTHKEGDL 150
           QS G  L D+ +E+GY L C +YP SDC I    E +L
Sbjct: 109 QS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144

The following BLAST results are available for this feature:

BLAST of CmaCh15G005210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	4.2e-48	64.71	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	1.0e-46	63.89	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P14937	5.0e-41	76.53	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P94044	1.5e-40	62.90	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]
P14936	1.9e-40	75.51	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]

BLAST of CmaCh15G005210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K096	8.2e-79	100.00	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111489026 PE=3 SV=1	[more]
A0A6J1FEX9	4.5e-77	98.67	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111444864 PE=3 SV=1	[more]
A0A6J1JQ79	1.4e-70	90.00	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1	[more]
A0A6J1E8R7	3.1e-70	90.00	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1	[more]
A0A6J1BZM5	1.6e-69	89.33	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111006691 PE=3 SV=1	[more]

BLAST of CmaCh15G005210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992802.1	1.7e-78	100.00	ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022992803.1 ferredoxin, root R...	[more]
KAG6578819.1	1.1e-77	99.33	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7016344.1	1.1e-77	99.33	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022938723.1	9.3e-77	98.67	ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022938724.1 ferredoxin, root...	[more]
XP_023551682.1	1.1e-74	97.33	ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh15G005210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	7.4e-48	63.89	ferredoxin 3	[more]
AT1G10960.1	4.1e-38	60.42	ferredoxin 1	[more]
AT1G60950.1	1.1e-35	57.82	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	6.7e-33	58.04	ferredoxin 4	[more]
AT4G14890.1	2.1e-18	45.92	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 55..150 e-value: 8.4E-51 score: 167.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 63..136 e-value: 3.0E-20 score: 71.9
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 56..147 score: 13.018472
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 61..142 e-value: 2.74295E-33 score: 110.562
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 53..150 e-value: 5.5E-36 score: 124.3
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 1..150
None	No IPR available	PANTHER	PTHR43112:SF31	FERREDOXIN	coord: 1..150
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 93..101
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 54..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G005210.1	CmaCh15G005210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding