CmaCh15G004880 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G004880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr15: 2193930 .. 2195530 (-)
RNA-Seq Expression	CmaCh15G004880
Synteny	CmaCh15G004880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCAAATTCAATCGGAACTTCTACTCACAAGCGGCCGTCCGGTGATTCTGCTCCGACCTCCGGCTTTGCGGCTTCGCAATTTTGTTCATATTTCAGAGTCAAATACGCGATTTCTGCATATTGTTTGCAGGAGGATCAGTATGTCGCTTCATCGGCTTCGCGATCCGGTTGTTGGCCGCGCTTGCTCTCTTCTCTTCTCTCGCTAGGAGCTTTCCATTCGTCTTCATCTATCTCCTCCGGATACATCTCTCGGTATCACTTTTTGATTGAATATTTGTTTGATTTTAGTTTCTTATTATAAGCTCGATCTTTTTGGTTGAAGTTGTTTTTAATTTCTACACGGCCTCCTGTTTATTTATGTATGGATTTAGTATGTGGTTGTTGTGTGAGATTTGATATTCTGATTCATTTTGCGCGAAAATTCGTTTGATTGAGTGTTTTAAGATGTCAAATGTCAGTTTGGTTTAATGGTGGAGGAACCGTTGAGGAAGAGTCTCAAAATTGTTGAAATTGTTTTTTTGTGTTCTTCTCAAATTTTTGTTTCATTTATTTGTGGGGCCTATGGACGGCCGATTCGAACACAAGGATCTTGACGATTTAAGATTAGTTAAGCAAGTATTTGCCTTCCACCACATTGCCTAATTGCGCATCATTTCCATGAATTAGCTGGGAATTATTGAAGGACCTATGAATGTTGTTTTCATAATTGGTACTTGCCATGCCAGTCCTCTGGTTAGTTAGAAATCACAAACCTCAAACTTCCACATTGATATGGTATTGTCCACTTTGAACATAAGTTCTCATAACTTTGCTTTTGGTTTTCCCAAAAGGCTTTGTACCAATGAAGATGTATTCCTTGCTTATAATCCTATGATCAACCCCTTAATTAGCCAATGTGAAACTCCTCTCTCAATAATCCTCAACAACACTGTCAAGTAAAAAGTAAACCGAAAAGATTAGGGACATGTATCTCTAAGAAGTCTAAGCCTCAATTGGACAATTAAACATGATGGATGCGTCCTGCTTTTCCCATGGCAGTCTCTTACCCATTTGCCTATTAATTTGTACCTTAAATTTGGTAGCCAATGTTACTGCTTCCATGAAATACCCCAAATGTTGGAGCTTCACCTTTTCTTGGATATATATATCGTACAAGTCGATCTCCATCTTATAATCTTGTGATTCAAAACTGTGGTGTTGGTTGTGGAACACTCCTTGTTGTTCAAAGACTGGTTGTTGTTGAAGAAAGGTCTCTTCCTGACTAGAAGAGTCAAAATCTTGGTAAGTTAATCTTGCATATGTTCTTGCAGCCAATTATTGGGGAATTTTATTTGGCGTTCTGTGAAGGCTGTAGTCTTTGTTCTTGGAGCATTCTTGCTGTTTTATTCATGTTGCCCTTCTTCTTTTTGGATGAGGATTATTATCATTTCTTCCATTTATTTCCCCACCAATCTCATTTCAATTCTTTCTAATTGTTGAGCTATTGTTTCCAGAACGTGTTTAATTTTGGAGAACAAATTGTTGGTGGAGTTGTGGACTCCAAATTGGAATGATCCGTGTCGATTTGGAGGCCGTGACAACCTTCTTTCCCACCATTAG

mRNA sequence

GATTCAAATTCAATCGGAACTTCTACTCACAAGCGGCCGTCCGGTGATTCTGCTCCGACCTCCGGCTTTGCGGCTTCGCAATTTTGTTCATATTTCAGAGTCAAATACGCGATTTCTGCATATTGTTTGCAGGAGGATCAGTATGTCGCTTCATCGGCTTCGCGATCCGGTTGTTGGCCGCGCTTGCTCTCTTCTCTTCTCTCGCTAGGAGCTTTCCATTCGTCTTCATCTATCTCCTCCGGATACATCTCTCGAACGTGTTTAATTTTGGAGAACAAATTGTTGGTGGAGTTGTGGACTCCAAATTGGAATGATCCGTGTCGATTTGGAGGCCGTGACAACCTTCTTTCCCACCATTAG

Coding sequence (CDS)

GATTCAAATTCAATCGGAACTTCTACTCACAAGCGGCCGTCCGGTGATTCTGCTCCGACCTCCGGCTTTGCGGCTTCGCAATTTTGTTCATATTTCAGAGTCAAATACGCGATTTCTGCATATTGTTTGCAGGAGGATCAGTATGTCGCTTCATCGGCTTCGCGATCCGGTTGTTGGCCGCGCTTGCTCTCTTCTCTTCTCTCGCTAGGAGCTTTCCATTCGTCTTCATCTATCTCCTCCGGATACATCTCTCGAACGTGTTTAATTTTGGAGAACAAATTGTTGGTGGAGTTGTGGACTCCAAATTGGAATGATCCGTGTCGATTTGGAGGCCGTGACAACCTTCTTTCCCACCATTAG

Protein sequence

DSNSIGTSTHKRPSGDSAPTSGFAASQFCSYFRVKYAISAYCLQEDQYVASSASRSGCWPRLLSSLLSLGAFHSSSSISSGYISRTCLILENKLLVELWTPNWNDPCRFGGRDNLLSHH

Homology

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BLAST of CmaCh15G004880 vs. NCBI nr
Match: KAG6578784.1 (hypothetical protein SDJN03_23232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-09
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 45  EDQYVASSASRSGCWPRLLSSLLSLGAFHSSSSISSGYISR 86
           ED YVASSASRSG WPRLLSSL SLGAFHSSSSISSGYISR
Sbjct: 299 EDHYVASSASRSGYWPRLLSSLRSLGAFHSSSSISSGYISR 339

The following BLAST results are available for this feature:

BLAST of CmaCh15G004880 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh15G004880 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh15G004880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578784.1	2.3e-09	92.68	hypothetical protein SDJN03_23232, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh15G004880 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G004880.1	CmaCh15G004880.1	mRNA