CmaCh15G004720 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G004720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 2099958 .. 2103499 (+)
RNA-Seq ExpressionCmaCh15G004720
SyntenyCmaCh15G004720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGGTCACACCTTCAAGAGCTTCTCTCCTGAGTGCTCTAAGAAGCAGTTGGGAAGAAGAACTGTCCAAACCAGATGTTGGCTCATCTAACAGCAAAATCGAAGGCTCTATCACCATTTCTAACCCGACATTCACCCTCTTCCTTTGTCCTCCAGAGATTCCTCGCTTTTCCACTGTCCCGACCAAGGAGTTTCTCACAGTCTGGAGCCCCAAGAACTCGATAACTCTTTCAACAATTAGAACCTTATCTGCTTTGGATAACTCCACAGAAAGCCTATGACAATAGGCAGTCCATTATCAAAAAGCTTACAGACAGTAATGATAAACTACTTAGAAAAGAACAAAGGAAATTAGTGATGAAATCCAGAAAGCCATAATTCATCTTAAAGTCAATTCTATGGAGATGCCTTCGCACCGCTGTAGTTTCGACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATCAGGTGGTTTGTGGGATTTTGTTGCTCTCCACGGTTCTTTCAGACTAATAGGTTTCATGTTACGTCAATAAGATAAAGCAAAGAGGAAAGGTTCAAATACCTGCAGTTTGCACTGAACCATAGATTCTCTTCCACTGTCAAGTTCCCATGGACAATATCATCTTGAGGTACAAAACCCATAATTCTTTTATATGACAGAATTGATTCATTCTTTCCATTTATTAGAATAGAACCTGTAGTCTTGCATCCAATTGCTTTTCCTGCCAAAGCAGAAAGAAACGTTGTTTTTCCAGCCCCAGATGGACCCATGACAGCAGTGATCCGGCCGGGCTTGATGTTTCCAGTGACACATCTCAAAAGGTGCTTGTTTTTTGTTTTCAAAGTAAGGTTTAGGTCTTTAAATGAAACTTCAATAGGAGGGCGCCTTTTATTCTCTGGATTAGTTGCCATTTTAATTACACTTGAGAAAGTAAGATTTTGATTCTCTTGCTGCTGAACCTTTTCTTTCTCGAGTTGCATGTAAGCATGCTGAAACATCTGGCTGTGAGTACTTGAATGCTTTCCCTTTGGCACATGTTTTTTAATACCCTTTTCATTTCTAGTTTCATTATGAAGGCCTTCATGATCATCATGGTCTTCTTCAATTTCATGTATCATTCCCATGTGACCAGTCTGGCTATCTGTTCTTCCTTCAATGGGCACAGACGAAGCGGATGATGTGGTTGGGATACGTGAGTATGACGTTGATAAATCATTGTCCATATCAGATTTGGATTGATCCAAAATCTTAAATTGTTCTGTATCCGAGCTTTTCACATGTGAAAACTTTCGTGATAGTTGAACTTGCAAACCACTTGCATGCTTCATTGCAGCTTTTTTCGCAGCTTTCCACCTTTGTTGTGCTTTTGCTGTTGTCTTTGCACTGTTTGCTGCTGCCTCCCTGGATTTAGCCAGTCTCCTTTCTCTAGCACTAAGAACTTGGTCGGAGAAATTGTAAATTATGAGTAGCACAGTGCTCAAACCCACCTGCATAAGCAAAGAAAAGTTTCGATTCTTATTCAAGTCTTGAATGAGCAGTCATTTCTCGTAGAGCGTAGAACAAGAAAAGTCAGAAAGAAGAGAGTGATATTGGCAGGGGTAAATTGGGGAAGAAGAGGACTTGGAGGCCTAATCAGCGAGTGGGTTAGGAGTTGTGCCTTAATCTTCCGAAGTTTGGACTCTTATCCTTCTTGTTACCTTTACTCAGATTTTCACATTAGTAGATGACTTACTAAAAGTATTACTCCATAAGCATGGATATTCTGATTTGCAGTGTTAGCATCACATGAAGTAAGCTTGAAGCATCCTGCAATACGTCCGGTAGAATAGATCGATGAGAAAAAATAGAGGTTCGAACGTGCAAGGATATGGAATTCGGTATCGCACTTACTATTCTGAGAAGTTGAACCCTTTCTGCAGTAATATCTGCAATGGCAGCAAAATGGATCGATGAGATTAGAAAGCTCAGTAAACAATGGTTTATATAACATATCAGTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTTCGACCAACATCAGCCCACATGTTTGCTCCTCCACAGGTATGGTTGGGCCGCCCAGGTGGTAGCTGGTAAAGATATCTGCAAGAACAAGAAAATGGATAACTTCATTATGCTGAACAACATAGAGAAGTGGCAGACATGGTATGGTTTGTACTTACGGTTCACATACTCCAGTTGTTTCATTCAACTTGGCAAGGGGACAATAGGATCCTAAAGGGCATGCTGTCAGATACAAAACAGTGTTAGAAAGTGAGCACAATTCAGCTACTTATAAGGGTATAAAACAAGCTTGTAGAGGCTTAAATTTACGAGGGAAATGAAAATGAGCAATTTTCTTGTGAGATTTCACATCAGTTGGAGAGGGGGAACGAAATATTTCTTATAAGGGTGTGGAAACATCTTCCTAATGAACGTGTTTTAAAACCTTGAGAGGAAGCCCGGAATGAAAAAACCAAAGAGAACAATATCTACTATCAGTGAGCTTAAGCTATTACAAATGGTATCAGAGCCAGATACTGTGTCATGGGCTAACAGGACGTTGGGCCCTTAAAGGGGATGGATTGTGAGATCTCACGTCAGTTGGAGAGGGTAACAAAACATTCCTTATAAGGGTGTGAAGACTTCTCCCTAGTGGACGCGTTCTAAAACCTTGAGGGGAAACCCATAAGAGAGCTCAAAGAAGACAATATCTACTAGCGATGGGCTTGGACTGTTACAAATGGTATAAGAGCCAGACAGTGGGCGGTGTGATAACGAGGATGCTAGGCCCTCAAGGGGGCTGGATGTGAGATCCCACATCGGTTAGAGAGGGTAACTAACTATTCCTCATAAGGGTGTTGAGACCTCTCCCTAGTGGACGCATTTTAAAACCTTGTGGGAAAGCCCAGAAGGGAAAGTTCAAAGAGGACAATATCTGCTAGTAGTTGGCTTGGCGGTTACATTTCTAGATGAAGATCAAACAGGTATAGGTCTAAATACTTACGAATCATGCATGTAAGACCCTGAGGACAGAAGAAACCATCGCAACAAGCTTGGCAATCATGGATTCTTGAAGGAATTTGCTGGGAATTAGTAAGGTCGACGAGCTGATCCGGACCGACACTGCATGCCCATCCTGGCTCACAACCAGAAGCCCAAGATGTCAAATTACAATTGTTGTTAAGTTTCAGTTTGAGGAAGGAAGCTGTTGAAGCAGTTGGGGGAGCCTGAAGGATGATACTGTCAAAGTAAAACTTGATTTCTGCTGCTGTACACAGGCGCTGTCCTGTTAATGGAAGATTTTCTTGAGCTAATAATTAAAATAGATATTGAAAGATTTTCCTTTTTTTTGTTCTTTTCACTTACGGATTGCTCATACCATTCATCTTCTGTAGGCAAGAAGACAAGAAATCCAGATTAGATGA

mRNA sequence

ATGGAGATGGTCACACCTTCAAGAGCTTCTCTCCTGAGTGCTCTAAGAAGCAGTTGGGAAGAAGAACTGTCCAAACCAGATGTTGGCTCATCTAACAGCAAAATCGAAGGCTCTATCACCATTTCTAACCCGACATTCACCCTCTTCCTTTGTCCTCCAGAGATTCCTCGCTTTTCCACTGTCCCGACCAAGGAGTTTCTCACAAATAGAACCTGTAGTCTTGCATCCAATTGCTTTTCCTGCCAAAGCAGAAAGAAACGTTGTTTTTCCAGCCCCAGATGGACCCATGACAGCAGTGATCCGGCCGGGCTTGATGTTTCCAGTGACACATCTCAAAAGTTTCATTATGAAGGCCTTCATGATCATCATGGTCTTCTTCAATTTCATGTATCATTCCCATGTGACCAGTCTGGCTATCTGTTCTTCCTTCAATGGGCACAGACGAAGCGGATGATGTGGTTGGGATACTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTTCGACCAACATCAGCCCACATGTTTGCTCCTCCACAGGCAAGAAGACAAGAAATCCAGATTAGATGA

Coding sequence (CDS)

ATGGAGATGGTCACACCTTCAAGAGCTTCTCTCCTGAGTGCTCTAAGAAGCAGTTGGGAAGAAGAACTGTCCAAACCAGATGTTGGCTCATCTAACAGCAAAATCGAAGGCTCTATCACCATTTCTAACCCGACATTCACCCTCTTCCTTTGTCCTCCAGAGATTCCTCGCTTTTCCACTGTCCCGACCAAGGAGTTTCTCACAAATAGAACCTGTAGTCTTGCATCCAATTGCTTTTCCTGCCAAAGCAGAAAGAAACGTTGTTTTTCCAGCCCCAGATGGACCCATGACAGCAGTGATCCGGCCGGGCTTGATGTTTCCAGTGACACATCTCAAAAGTTTCATTATGAAGGCCTTCATGATCATCATGGTCTTCTTCAATTTCATGTATCATTCCCATGTGACCAGTCTGGCTATCTGTTCTTCCTTCAATGGGCACAGACGAAGCGGATGATGTGGTTGGGATACTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTTCGACCAACATCAGCCCACATGTTTGCTCCTCCACAGGCAAGAAGACAAGAAATCCAGATTAGATGA

Protein sequence

MEMVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVPTKEFLTNRTCSLASNCFSCQSRKKRCFSSPRWTHDSSDPAGLDVSSDTSQKFHYEGLHDHHGLLQFHVSFPCDQSGYLFFLQWAQTKRMMWLGYCLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQARRQEIQIR
Homology
[Close]
BLAST of CmaCh15G004720 vs. ExPASy TrEMBL
Match: A0A0K9Q0Z0 (Uncharacterized protein OS=Zostera marina OX=29655 GN=ZOSMA_133G00160 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M TPS+AS   ALRS ++EELS PDVGSS    EGSITIS+PTFTLFLCPPEIPRFSTVP
Sbjct: 1  MFTPSQASRRRALRSRFDEELSSPDVGSSRINKEGSITISSPTFTLFLCPPEIPRFSTVP 60

Query: 63 TKEFLT 69
          T E LT
Sbjct: 61 TNESLT 66

[Close]
BLAST of CmaCh15G004720 vs. ExPASy TrEMBL
Match: A0A0A9QKM8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M  PSRAS    LRSS +EELS+P+VGSS  + +G ITIS PT T FL PPEIPRFSTVP
Sbjct: 1  MFVPSRASWQRVLRSSCDEELSRPEVGSSRIRRDGFITISIPTLTRFLWPPEIPRFSTVP 60

Query: 63 TKEFL 68
          TKEFL
Sbjct: 61 TKEFL 65

[Close]
BLAST of CmaCh15G004720 vs. ExPASy TrEMBL
Match: A0A7C8ZMD5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M TPS+AS L A +S  EE LS+PDVGSS +K EGS+TIS PTFT    PPEIPRFSTVP
Sbjct: 1  MFTPSQASRLRARKSKSEEALSRPDVGSSRNKSEGSMTISKPTFTRLRWPPEIPRFSTVP 60

Query: 63 TKEFLTN 70
          TKE  T+
Sbjct: 61 TKESRTS 67

[Close]
BLAST of CmaCh15G004720 vs. ExPASy TrEMBL
Match: A0A7I8K2N8 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02001977 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.4e-06
Identity = 40/72 (55.56%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M TPSRAS   ALRSSWEE LSKP+VGSS    EGSITISNPT      P +    ST  
Sbjct: 1  MFTPSRASRRRALRSSWEEALSKPEVGSSRISKEGSITISNPT------PSDSITLSTTK 60

Query: 63 TKEFLTNRTCSL 75
          T   L   + SL
Sbjct: 61 TLSALDKSSGSL 66

[Close]
BLAST of CmaCh15G004720 vs. NCBI nr
Match: KAG7016297.1 (hypothetical protein SDJN02_21404, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 151 MMWLGYCLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQ 200
           ++ L  CLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQ
Sbjct: 99  LLLLSTCLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQ 147

[Close]
BLAST of CmaCh15G004720 vs. NCBI nr
Match: KMZ74167.1 (hypothetical protein ZOSMA_133G00160 [Zostera marina])

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-16
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M TPS+AS   ALRS ++EELS PDVGSS    EGSITIS+PTFTLFLCPPEIPRFSTVP
Sbjct: 1  MFTPSQASRRRALRSRFDEELSSPDVGSSRINKEGSITISSPTFTLFLCPPEIPRFSTVP 60

Query: 63 TKEFLT 69
          T E LT
Sbjct: 61 TNESLT 66

[Close]
BLAST of CmaCh15G004720 vs. NCBI nr
Match: CAA2615727.1 (unnamed protein product [Spirodela intermedia] >CAA7390693.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 61.6 bits (148), Expect = 9.1e-06
Identity = 40/72 (55.56%), Postives = 43/72 (59.72%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M TPSRAS   ALRSSWEE LSKP+VGSS    EGSITISNPT      P +    ST  
Sbjct: 1  MFTPSRASRRRALRSSWEEALSKPEVGSSRISKEGSITISNPT------PSDSITLSTTK 60

Query: 63 TKEFLTNRTCSL 75
          T   L   + SL
Sbjct: 61 TLSALDKSSGSL 66

The following BLAST results are available for this feature:
BLAST of CmaCh15G004720 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G004720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0K9Q0Z02.1e-1675.76Uncharacterized protein OS=Zostera marina OX=29655 GN=ZOSMA_133G00160 PE=4 SV=1[more]
A0A0A9QKM88.3e-1369.23Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7C8ZMD58.3e-1367.16Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7I8K2N84.4e-0655.56Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02001977 PE=4 SV... [more]
BLAST of CmaCh15G004720 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016297.12.6e-1689.80hypothetical protein SDJN02_21404, partial [Cucurbita argyrosperma subsp. argyro... [more]
KMZ74167.14.4e-1675.76hypothetical protein ZOSMA_133G00160 [Zostera marina][more]
CAA2615727.19.1e-0655.56unnamed protein product [Spirodela intermedia] >CAA7390693.1 unnamed protein pro... [more]
BLAST of CmaCh15G004720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G004720.1CmaCh15G004720.1mRNA