Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCTATCATCAACAAGTTTCGAACGAAGATGCAAATCCCTACCTCCAGTAGCCAAGCCATTTAATGCTCTCAACAATCTCTCTCTATCTCTCCCTTTTAATGCCCTCTCACTGCTTCTCAACAGATCAATTCGATCTTCTTCCAAATCCTTCATGGCGGACCTCGAAATCGCATCCGCAGCCAAATTCCGGTACCGGAGACTGCGGCACAGCGACGAATTGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGGAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGCATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTACGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTTACCTAA
mRNA sequence
ATGCTGCTATCATCAACAAGTTTCGAACGAAGATGCAAATCCCTACCTCCAGTAGCCAAGCCATTTAATGCTCTCAACAATCTCTCTCTATCTCTCCCTTTTAATGCCCTCTCACTGCTTCTCAACAGATCAATTCGATCTTCTTCCAAATCCTTCATGGCGGACCTCGAAATCGCATCCGCAGCCAAATTCCGGTACCGGAGACTGCGGCACAGCGACGAATTGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGGAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGCATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTACGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTTACCTAA
Coding sequence (CDS)
ATGCTGCTATCATCAACAAGTTTCGAACGAAGATGCAAATCCCTACCTCCAGTAGCCAAGCCATTTAATGCTCTCAACAATCTCTCTCTATCTCTCCCTTTTAATGCCCTCTCACTGCTTCTCAACAGATCAATTCGATCTTCTTCCAAATCCTTCATGGCGGACCTCGAAATCGCATCCGCAGCCAAATTCCGGTACCGGAGACTGCGGCACAGCGACGAATTGGAGTCGGCGATTGCGAGATCCAGACTAGGAGAACAGAGGAGGTTTGGAGGTTTCAGAATGCGAAGGGCTTCGATCGGGAGGAGGTTGAAGAAGCTCAGAATCCCTAGCCTCCGAAAGCTTTTCAGGAAATCGCGGCTGGTGAATGCCATGGGAGGCTCCATTTCCAAGGTTCTGAAGCGATTCAGAGATGGCGAAGCGCATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTCCTTCAGATCAATCCAAGCTCCATCAAATGCCTTACGAACCACCATCAGTATCCCCTTCAAAATTTCCCCCCAACTTTCTCCCTCCCAGCTTTTACCTAA
Protein sequence
MLLSSTSFERRCKSLPPVAKPFNALNNLSLSLPFNALSLLLNRSIRSSSKSFMADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCLTNHHQYPLQNFPPTFSLPAFT
Homology
BLAST of CmaCh15G003680 vs. ExPASy TrEMBL
Match:
A0A6J1FMJ7 (uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC111445317 PE=4 SV=1)
HSP 1 Score: 332.8 bits (852), Expect = 9.2e-88
Identity = 175/183 (95.63%), Postives = 177/183 (96.72%), Query Frame = 0
Query: 1 MLLSSTSFERRCKSLPPVAKPFNALNNLSLSLPFNALSLLLNRSIRSSSKSFMADLEIAS 60
MLLSSTSFER+CKS PPVAKPFNALNNLSLSLPFNALSLLLN IR SSKSFMADLEIAS
Sbjct: 1 MLLSSTSFERKCKSQPPVAKPFNALNNLSLSLPFNALSLLLNGPIRFSSKSFMADLEIAS 60
Query: 61 AAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSR 120
AAKFRYRRLRHSDELESA ARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSR
Sbjct: 61 AAKFRYRRLRHSDELESAFARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSR 120
Query: 121 LVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCLTNHHQYPLQNFPPTFS 180
LVNAMGGSISKVLKRFRDGEA+LGDLFAGNYLFLQINPSSIKCL NHHQYPLQNFPPTFS
Sbjct: 121 LVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLANHHQYPLQNFPPTFS 180
Query: 181 LPA 184
LPA
Sbjct: 181 LPA 183
BLAST of CmaCh15G003680 vs. ExPASy TrEMBL
Match:
A0A6J1E2Z5 (uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC111430312 PE=4 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 6.7e-38
Identity = 100/148 (67.57%), Postives = 114/148 (77.03%), Query Frame = 0
Query: 44 SIRSSSKSFMADLE-IASAAKFRYRRLRHSDELESAIARSRLGE---QRRFGG-----FR 103
S+ S+S M DL+ A KFRYRRLR+S+E E A RSR GE +RRF G FR
Sbjct: 8 SLLKLSESAMPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFR 67
Query: 104 MRRASIGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLF 163
+RRASIGRRLKKLR+PSLRKL RKSRLV AM GSI+KV+KRFR+GEA+LGDLFAGNYLF
Sbjct: 68 IRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLF 127
Query: 164 LQINPSSIKCLTNHHQYPLQNFPPTFSL 182
LQ+NPSSIKC NHH LQNF PT+SL
Sbjct: 128 LQVNPSSIKCHKNHHS-ALQNFAPTYSL 154
BLAST of CmaCh15G003680 vs. ExPASy TrEMBL
Match:
A0A0A0KSD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 8.7e-38
Identity = 99/153 (64.71%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 53 MADLEIASAAKFRYRRLRHSDELESAIARSRLGE--------QRRFGGFRMR------RA 112
MADLE ASA KFRYRRLR+S+E E A RSR G +RR FRMR
Sbjct: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRRRRWWFRMRMRKGSSSL 60
Query: 113 SIGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQIN 172
SIGRRLKKLRIPSLRKL RK RLVNAM GSI+KV+KRFRDGEA+LGDLFAGNYLFLQ+N
Sbjct: 61 SIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQVN 120
Query: 173 PSSIKCLTNHHQ------YPLQNFPPTFSLPAF 185
PSS+KCL NHH + ++NFP T+SLP+F
Sbjct: 121 PSSMKCLKNHHHHQQQHGFDVRNFPQTYSLPSF 153
BLAST of CmaCh15G003680 vs. ExPASy TrEMBL
Match:
A0A1S4E272 (uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=4 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 7.4e-37
Identity = 98/149 (65.77%), Postives = 110/149 (73.83%), Query Frame = 0
Query: 53 MADLEIASAAKFRYRRLRHSDELESAIARSRLGE-------QRRFGGFRMR------RAS 112
MADLE ASA KFRYRRLR+S+E E A RSR G + R FRMR S
Sbjct: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS 60
Query: 113 IGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINP 172
IGRRLKKLRIPSLRKL RK RLVNAM GSI+KVLKRFRDGEA+LGDLFAGNYLFLQ+NP
Sbjct: 61 IGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP 120
Query: 173 SSIKCLTNHHQ---YPLQNFPPTFSLPAF 185
SS+KC+ NHHQ + ++NF T+SLP F
Sbjct: 121 SSMKCMKNHHQQHGFDVRNFTQTYSLPNF 149
BLAST of CmaCh15G003680 vs. ExPASy TrEMBL
Match:
A0A6J1JM01 (uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096 PE=4 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 96/138 (69.57%), Postives = 108/138 (78.26%), Query Frame = 0
Query: 53 MADLE-IASAAKFRYRRLRHSDELESAIARSRLGEQ--RRFGG-----FRMRRASIGRRL 112
M DL+ A KFRYRRLR+S+E E A RSR GE+ RRF G F++RRASIGRRL
Sbjct: 1 MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60
Query: 113 KKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKC 172
KKLR+PSLRKL RKSRLV AM GSISKV+KRFR+GEA+LGDLFAGNYLFLQ+NPSSIKC
Sbjct: 61 KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
Query: 173 LTNHHQYPLQNFPPTFSL 182
NHH L NF PT+SL
Sbjct: 121 HKNHHS-ALPNFAPTYSL 137
BLAST of CmaCh15G003680 vs. NCBI nr
Match:
XP_022939385.1 (uncharacterized protein LOC111445317 [Cucurbita moschata])
HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 175/183 (95.63%), Postives = 177/183 (96.72%), Query Frame = 0
Query: 1 MLLSSTSFERRCKSLPPVAKPFNALNNLSLSLPFNALSLLLNRSIRSSSKSFMADLEIAS 60
MLLSSTSFER+CKS PPVAKPFNALNNLSLSLPFNALSLLLN IR SSKSFMADLEIAS
Sbjct: 1 MLLSSTSFERKCKSQPPVAKPFNALNNLSLSLPFNALSLLLNGPIRFSSKSFMADLEIAS 60
Query: 61 AAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSR 120
AAKFRYRRLRHSDELESA ARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSR
Sbjct: 61 AAKFRYRRLRHSDELESAFARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSLRKLFRKSR 120
Query: 121 LVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCLTNHHQYPLQNFPPTFS 180
LVNAMGGSISKVLKRFRDGEA+LGDLFAGNYLFLQINPSSIKCL NHHQYPLQNFPPTFS
Sbjct: 121 LVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLANHHQYPLQNFPPTFS 180
Query: 181 LPA 184
LPA
Sbjct: 181 LPA 183
BLAST of CmaCh15G003680 vs. NCBI nr
Match:
KAG7016219.1 (hypothetical protein SDJN02_21324, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 248.4 bits (633), Expect = 4.7e-62
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 0
Query: 53 MADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 112
MADLEIASAAKFRYRRLRHSDE ESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL
Sbjct: 1 MADLEIASAAKFRYRRLRHSDESESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 60
Query: 113 RKLFRKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCLTNHHQYPL 172
RKLFRKSRLVNAMGGSISKVLKRFRDGEA+LGDLFAGNYLFLQINPSSIKCL NHHQYPL
Sbjct: 61 RKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLANHHQYPL 120
Query: 173 QNFPPTFSLPA 184
QNFPPTFSLPA
Sbjct: 121 QNFPPTFSLPA 131
BLAST of CmaCh15G003680 vs. NCBI nr
Match:
XP_023551524.1 (uncharacterized protein LOC111809316 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 244.6 bits (623), Expect = 6.8e-61
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 0
Query: 53 MADLEIASAAKFRYRRLRHSDELESAIARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 112
MAD EIASAAKFRYRRLRHSDELESA ARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL
Sbjct: 1 MADQEIASAAKFRYRRLRHSDELESAFARSRLGEQRRFGGFRMRRASIGRRLKKLRIPSL 60
Query: 113 RKLFRKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCLTNHHQYPL 172
RKLFRKSRLVNAMGGSISKVLKRFRDGEA+LGDLFAGNYLFLQINPSSIKCL NHHQYPL
Sbjct: 61 RKLFRKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKCLPNHHQYPL 120
Query: 173 QNFPPTFSLPA 184
Q+FPPTFSLPA
Sbjct: 121 QSFPPTFSLPA 131
BLAST of CmaCh15G003680 vs. NCBI nr
Match:
XP_038889218.1 (uncharacterized protein LOC120079105 [Benincasa hispida])
HSP 1 Score: 184.9 bits (468), Expect = 6.4e-43
Identity = 102/138 (73.91%), Postives = 116/138 (84.06%), Query Frame = 0
Query: 53 MADLEIASAAKFRYRRLRHSDELESAIARSRLGE---QRRFGGFRMRRA-SIGRRLKKLR 112
MADLE A AAKFRYRRL +S+E E A R R GE +R FR+R+A SIGRRLKKLR
Sbjct: 1 MADLETAPAAKFRYRRLSYSEEFEEAFGRYRGGERILKRSKRWFRIRKASSIGRRLKKLR 60
Query: 113 IPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKCLTNH 172
IPSLRKL RKS+LVNAM GSISK+LKRFRDGEA+LGDLFAGNYLFLQ+NPSS+KCL NH
Sbjct: 61 IPSLRKLLRRKSQLVNAMRGSISKILKRFRDGEAYLGDLFAGNYLFLQVNPSSMKCLKNH 120
Query: 173 HQYPLQNFPPTFSLPAFT 186
H++PLQNFP T+SLP+FT
Sbjct: 121 HRFPLQNFPQTYSLPSFT 138
BLAST of CmaCh15G003680 vs. NCBI nr
Match:
XP_022922294.1 (uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothetical protein SDJN02_07132, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 167.2 bits (422), Expect = 1.4e-37
Identity = 100/148 (67.57%), Postives = 114/148 (77.03%), Query Frame = 0
Query: 44 SIRSSSKSFMADLE-IASAAKFRYRRLRHSDELESAIARSRLGE---QRRFGG-----FR 103
S+ S+S M DL+ A KFRYRRLR+S+E E A RSR GE +RRF G FR
Sbjct: 8 SLLKLSESAMPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFR 67
Query: 104 MRRASIGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAHLGDLFAGNYLF 163
+RRASIGRRLKKLR+PSLRKL RKSRLV AM GSI+KV+KRFR+GEA+LGDLFAGNYLF
Sbjct: 68 IRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLF 127
Query: 164 LQINPSSIKCLTNHHQYPLQNFPPTFSL 182
LQ+NPSSIKC NHH LQNF PT+SL
Sbjct: 128 LQVNPSSIKCHKNHHS-ALQNFAPTYSL 154
BLAST of CmaCh15G003680 vs. TAIR 10
Match:
AT5G14410.1 (unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 63.2 bits (152), Expect = 2.6e-10
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 0
Query: 66 YRRLRHSDELESAIARSRLGEQRRFGGFRMRR-ASIG--RRLK-KLRIPSLRKLFRKSRL 125
Y+RL D++ R R F +R +R S+G RR++ +++I LR RK
Sbjct: 12 YKRLSLEDDVFGETTRRR----SSFYSYRFKRVVSLGGRRRIRVRVKIRRLRGFVRKK-- 71
Query: 126 VNAMGGSISKVLKRFRDGEAHLGDLFAGNYLFLQINPSSIKC---LTNHHQYPLQNFPPT 183
N + I K+LKR ++ ++H GDLFAGNYLF+Q+NPSS+ Q NFP
Sbjct: 72 ANRVKTGILKILKRLKESQSHFGDLFAGNYLFMQVNPSSLNAKYVFDKSFQGQNGNFPSR 129
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1FMJ7 | 9.2e-88 | 95.63 | uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC1114453... | [more] |
| A0A6J1E2Z5 | 6.7e-38 | 67.57 | uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC1114303... | [more] |
| A0A0A0KSD1 | 8.7e-38 | 64.71 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1 | [more] |
| A0A1S4E272 | 7.4e-37 | 65.77 | uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=... | [more] |
| A0A6J1JM01 | 1.3e-36 | 69.57 | uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022939385.1 | 1.9e-87 | 95.63 | uncharacterized protein LOC111445317 [Cucurbita moschata] | [more] |
| KAG7016219.1 | 4.7e-62 | 97.71 | hypothetical protein SDJN02_21324, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_023551524.1 | 6.8e-61 | 96.18 | uncharacterized protein LOC111809316 [Cucurbita pepo subsp. pepo] | [more] |
| XP_038889218.1 | 6.4e-43 | 73.91 | uncharacterized protein LOC120079105 [Benincasa hispida] | [more] |
| XP_022922294.1 | 1.4e-37 | 67.57 | uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothet... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G14410.1 | 2.6e-10 | 37.90 | unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bact... | [more] |
