CmaCh15G003640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G003640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Golgin candidate 6
Location	Cma_Chr15: 1670524 .. 1671153 (+)
RNA-Seq Expression	CmaCh15G003640
Synteny	CmaCh15G003640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTTAGGACAGTAATTTGGTGCTTGTTTATAGTTTTTTATACGATCTTTAGTATTGTGGTTTATCTGTGGGCTTTGTGCAGGGCGTGGTTGGGCTTGTTTTCGGCAATGAGAATTCTGCATCCAATAAAGATAGGTAAGTAGATCTTGTATACTTGTAAACACGAAGATGAATAAACTGCATGGCATACGCTTGCTCATCTTCCTTTTCTCATTCGGATTTTTTTTAATAGTTACGTTTACTGATTCCTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTAATTGTGAACCGTTTCCATAGCTACGTTGAACGTCTATTGGATCGCATTAGCAATGGTCAGCTTGCAGAGGACAGGAGAGCTGCTATGGTGGAGCTGCAGTCTGTTGTAGTAGAAAATCGTTCTGCCCAACTAGCTTTTGGTGCAATGGGTATGTGCTTTACTTGTTATCTAACTATAGTTGTATGGATTGTCTTAAATTTATAAATAAAGAATATACTTGACATGTTTTTGCAGGATTTCCTGTGCTTATGAGTGTTTTAAAGGAGGAACGAGATGGTGTTGAAATGGTTGCAGTTTATCTGTTCTTTGCTTCCCTTTTATTGAGGAATTAA

mRNA sequence

ATGATGTTTAGGACAGGCGTGGTTGGGCTTGTTTTCGGCAATGAGAATTCTGCATCCAATAAAGATAGCTACGTTGAACGTCTATTGGATCGCATTAGCAATGGTCAGCTTGCAGAGGACAGGAGAGCTGCTATGGTGGAGCTGCAGTCTGTTGTAGTAGAAAATCGTTCTGCCCAACTAGCTTTTGGTGCAATGGGATTTCCTGTGCTTATGAGTGTTTTAAAGGAGGAACGAGATGGTGTTGAAATGGTTGCAGTTTATCTGTTCTTTGCTTCCCTTTTATTGAGGAATTAA

Coding sequence (CDS)

ATGATGTTTAGGACAGGCGTGGTTGGGCTTGTTTTCGGCAATGAGAATTCTGCATCCAATAAAGATAGCTACGTTGAACGTCTATTGGATCGCATTAGCAATGGTCAGCTTGCAGAGGACAGGAGAGCTGCTATGGTGGAGCTGCAGTCTGTTGTAGTAGAAAATCGTTCTGCCCAACTAGCTTTTGGTGCAATGGGATTTCCTGTGCTTATGAGTGTTTTAAAGGAGGAACGAGATGGTGTTGAAATGGTTGCAGTTTATCTGTTCTTTGCTTCCCTTTTATTGAGGAATTAA

Protein sequence

MMFRTGVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAMGFPVLMSVLKEERDGVEMVAVYLFFASLLLRN

Homology

[Close]

BLAST of CmaCh15G003640 vs. ExPASy Swiss-Prot
Match: B0F9L4 (Golgin candidate 6 OS=Arabidopsis thaliana OX=3702 GN=GC6 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-23
Identity = 53/79 (67.09%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVG+VFG +N +SN+DSY++RLLDRISNG L +DRR A+VELQSVV E+ +AQLAFGA 
Sbjct: 9  GVVGMVFG-DNQSSNEDSYIQRLLDRISNGTLPDDRRTAIVELQSVVAESNAAQLAFGAA 68

Query: 66 GFPVLMSVLKEERDGVEMV 85
          GFPV++ +LK++RD +EMV
Sbjct: 69 GFPVIVGILKDQRDDLEMV 86

[Close]

BLAST of CmaCh15G003640 vs. ExPASy TrEMBL
Match: A0A6J1JY95 (golgin candidate 6-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489381 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.2e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 6   GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
           GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM
Sbjct: 9   GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 68

Query: 66  GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 98
           GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN
Sbjct: 69  GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 100

[Close]

BLAST of CmaCh15G003640 vs. ExPASy TrEMBL
Match: A0A6J1JW23 (golgin candidate 6-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489381 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-32
Identity = 82/92 (89.13%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVGLVFGNENSASNKD          SNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM
Sbjct: 9  GVVGLVFGNENSASNKD----------SNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 68

Query: 66 GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 98
          GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN
Sbjct: 69 GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 90

[Close]

BLAST of CmaCh15G003640 vs. ExPASy TrEMBL
Match: A0A0A0KNZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522960 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.8e-30
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVGLVFGNENSA+N+DSYVER+LDRISNGQ+AEDRRAAMVELQSVV E+R+AQLAFGAM
Sbjct: 9  GVVGLVFGNENSAANEDSYVERVLDRISNGQIAEDRRAAMVELQSVVAESRAAQLAFGAM 68

Query: 66 GFPVLMSVLKEERDGVEMV 85
          GFPVLMSVLKEERD VEMV
Sbjct: 69 GFPVLMSVLKEERDDVEMV 87

[Close]

BLAST of CmaCh15G003640 vs. ExPASy TrEMBL
Match: A0A1S3C8R8 (golgin candidate 6 OS=Cucumis melo OX=3656 GN=LOC103498116 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVGLVFGNENSA+N+DSYVER+LDRISNGQLAEDRR AMVELQSVV E+R+AQLAFGAM
Sbjct: 9  GVVGLVFGNENSAANEDSYVERVLDRISNGQLAEDRRTAMVELQSVVAESRAAQLAFGAM 68

Query: 66 GFPVLMSVLKEERDGVEMV 85
          GFPVLMSVLKEERD VEMV
Sbjct: 69 GFPVLMSVLKEERDDVEMV 87

[Close]

BLAST of CmaCh15G003640 vs. ExPASy TrEMBL
Match: A0A5A7T816 (Golgin candidate 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002400 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVGLVFGNENSA+N+DSYVER+LDRISNGQLAEDRR AMVELQSVV E+R+AQLAFGAM
Sbjct: 9  GVVGLVFGNENSAANEDSYVERVLDRISNGQLAEDRRTAMVELQSVVAESRAAQLAFGAM 68

Query: 66 GFPVLMSVLKEERDGVEMV 85
          GFPVLMSVLKEERD VEMV
Sbjct: 69 GFPVLMSVLKEERDDVEMV 87

[Close]

BLAST of CmaCh15G003640 vs. NCBI nr
Match: XP_022993340.1 (golgin candidate 6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 4.5e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 6   GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
           GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM
Sbjct: 9   GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 68

Query: 66  GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 98
           GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN
Sbjct: 69  GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 100

[Close]

BLAST of CmaCh15G003640 vs. NCBI nr
Match: XP_023551701.1 (golgin candidate 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 87/92 (94.57%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 6   GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
           GVVGL FGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVV ENRSAQL FGAM
Sbjct: 9   GVVGLDFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVAENRSAQLPFGAM 68

Query: 66  GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 98
           GFPVLMSVLKEERD VEMVAVYLFFAS LLRN
Sbjct: 69  GFPVLMSVLKEERDDVEMVAVYLFFASPLLRN 100

[Close]

BLAST of CmaCh15G003640 vs. NCBI nr
Match: XP_022993341.1 (golgin candidate 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 147.5 bits (371), Expect = 5.9e-32
Identity = 82/92 (89.13%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVGLVFGNENSASNKD          SNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM
Sbjct: 9  GVVGLVFGNENSASNKD----------SNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 68

Query: 66 GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 98
          GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN
Sbjct: 69 GFPVLMSVLKEERDGVEMVAVYLFFASLLLRN 90

[Close]

BLAST of CmaCh15G003640 vs. NCBI nr
Match: XP_004142783.1 (golgin candidate 6 [Cucumis sativus] >KGN51810.2 hypothetical protein Csa_007925 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVGLVFGNENSA+N+DSYVER+LDRISNGQ+AEDRRAAMVELQSVV E+R+AQLAFGAM
Sbjct: 9  GVVGLVFGNENSAANEDSYVERVLDRISNGQIAEDRRAAMVELQSVVAESRAAQLAFGAM 68

Query: 66 GFPVLMSVLKEERDGVEMV 85
          GFPVLMSVLKEERD VEMV
Sbjct: 69 GFPVLMSVLKEERDDVEMV 87

[Close]

BLAST of CmaCh15G003640 vs. NCBI nr
Match: KAA0037595.1 (golgin candidate 6 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVGLVFGNENSA+N+DSYVER+LDRISNGQLAEDRR AMVELQSVV E+R+AQLAFGAM
Sbjct: 9  GVVGLVFGNENSAANEDSYVERVLDRISNGQLAEDRRTAMVELQSVVAESRAAQLAFGAM 68

Query: 66 GFPVLMSVLKEERDGVEMV 85
          GFPVLMSVLKEERD VEMV
Sbjct: 69 GFPVLMSVLKEERDDVEMV 87

[Close]

BLAST of CmaCh15G003640 vs. TAIR 10
Match: AT3G27530.1 (golgin candidate 6 )

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-24
Identity = 53/79 (67.09%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 6  GVVGLVFGNENSASNKDSYVERLLDRISNGQLAEDRRAAMVELQSVVVENRSAQLAFGAM 65
          GVVG+VFG +N +SN+DSY++RLLDRISNG L +DRR A+VELQSVV E+ +AQLAFGA 
Sbjct: 9  GVVGMVFG-DNQSSNEDSYIQRLLDRISNGTLPDDRRTAIVELQSVVAESNAAQLAFGAA 68

Query: 66 GFPVLMSVLKEERDGVEMV 85
          GFPV++ +LK++RD +EMV
Sbjct: 69 GFPVIVGILKDQRDDLEMV 86

The following BLAST results are available for this feature:

BLAST of CmaCh15G003640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0F9L4	3.1e-23	67.09	Golgin candidate 6 OS=Arabidopsis thaliana OX=3702 GN=GC6 PE=1 SV=2	[more]

BLAST of CmaCh15G003640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JY95	2.2e-40	100.00	golgin candidate 6-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489381 P...	[more]
A0A6J1JW23	2.9e-32	89.13	golgin candidate 6-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489381 P...	[more]
A0A0A0KNZ3	7.8e-30	89.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G522960 PE=4 SV=1	[more]
A0A1S3C8R8	1.3e-29	89.87	golgin candidate 6 OS=Cucumis melo OX=3656 GN=LOC103498116 PE=4 SV=1	[more]
A0A5A7T816	1.3e-29	89.87	Golgin candidate 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G0...	[more]

BLAST of CmaCh15G003640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993340.1	4.5e-40	100.00	golgin candidate 6-like isoform X1 [Cucurbita maxima]	[more]
XP_023551701.1	1.4e-36	94.57	golgin candidate 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993341.1	5.9e-32	89.13	golgin candidate 6-like isoform X2 [Cucurbita maxima]	[more]
XP_004142783.1	1.6e-29	89.87	golgin candidate 6 [Cucumis sativus] >KGN51810.2 hypothetical protein Csa_007925...	[more]
KAA0037595.1	2.7e-29	89.87	golgin candidate 6 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh15G003640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27530.1	2.2e-24	67.09	golgin candidate 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 21..96 e-value: 6.4E-14 score: 53.4
None	No IPR available	PANTHER	PTHR10013:SF6	BNACNNG51860D PROTEIN	coord: 5..85
None	No IPR available	PANTHER	PTHR10013	GENERAL VESICULAR TRANSPORT FACTOR P115	coord: 5..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G003640.1	CmaCh15G003640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0048280	vesicle fusion with Golgi apparatus
cellular_component	GO:0000139	Golgi membrane