CmaCh15G003550 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAATGGCTTCTCCATCTCCTCTCCAAATTTTCTCACTCAAATCCTCGCGTTCTTCCACCTTAATTTTCGTAAAGTTCAAAACTTTCATCCACACTATCCTCTTCTCTCACTTATGTCGCTTGGCTCGACCGATCTTTCGAGCCAAGTCGACAGTCGTTCAAATTCTAAAGAGAAGCAATCACTTCAAGAACAAGAACAAGAACAAGCTCATTTTCGGGTCGTTTAGACTCCACTACAACTGGTGCTCTTCCCACGTAATGCCCGTTCTCGATCCCACGTGGGAAGGGCATGTTGACTACAACCATGCTGCTGCAGCTTCCACCCCGGACAGCCCACAGCTGTCCGGGTATTTGCAGTGGCTGGAGGAGAGAAAATTAGAGGGCGAACCGACGATGACGACGACGACGACGACGACGGAGGTGAACGAGATCGACAAATTAGCGGAGATGTTCATTGCAAGATGCCACGAGAAATTCAGGCTGGAGAAACAGGAATCGGCTAGAAGGTTTGAAGAGATGATTGCTAGAAGCATGTGA ATGAAAATGGCTTCTCCATCTCCTCTCCAAATTTTCTCACTCAAATCCTCGCGTTCTTCCACCTTAATTTTCGTAAAGTTCAAAACTTTCATCCACACTATCCTCTTCTCTCACTTATGTCGCTTGGCTCGACCGATCTTTCGAGCCAAGTCGACAGTCGTTCAAATTCTAAAGAGAAGCAATCACTTCAAGAACAAGAACAAGAACAAGCTCATTTTCGGGTCGTTTAGACTCCACTACAACTGGTGCTCTTCCCACGTAATGCCCGTTCTCGATCCCACGTGGGAAGGGCATGTTGACTACAACCATGCTGCTGCAGCTTCCACCCCGGACAGCCCACAGCTGTCCGGGTATTTGCAGTGGCTGGAGGAGAGAAAATTAGAGGGCGAACCGACGATGACGACGACGACGACGACGACGGAGGTGAACGAGATCGACAAATTAGCGGAGATGTTCATTGCAAGATGCCACGAGAAATTCAGGCTGGAGAAACAGGAATCGGCTAGAAGGTTTGAAGAGATGATTGCTAGAAGCATGTGA ATGAAAATGGCTTCTCCATCTCCTCTCCAAATTTTCTCACTCAAATCCTCGCGTTCTTCCACCTTAATTTTCGTAAAGTTCAAAACTTTCATCCACACTATCCTCTTCTCTCACTTATGTCGCTTGGCTCGACCGATCTTTCGAGCCAAGTCGACAGTCGTTCAAATTCTAAAGAGAAGCAATCACTTCAAGAACAAGAACAAGAACAAGCTCATTTTCGGGTCGTTTAGACTCCACTACAACTGGTGCTCTTCCCACGTAATGCCCGTTCTCGATCCCACGTGGGAAGGGCATGTTGACTACAACCATGCTGCTGCAGCTTCCACCCCGGACAGCCCACAGCTGTCCGGGTATTTGCAGTGGCTGGAGGAGAGAAAATTAGAGGGCGAACCGACGATGACGACGACGACGACGACGACGGAGGTGAACGAGATCGACAAATTAGCGGAGATGTTCATTGCAAGATGCCACGAGAAATTCAGGCTGGAGAAACAGGAATCGGCTAGAAGGTTTGAAGAGATGATTGCTAGAAGCATGTGA MKMASPSPLQIFSLKSSRSSTLIFVKFKTFIHTILFSHLCRLARPIFRAKSTVVQILKRSNHFKNKNKNKLIFGSFRLHYNWCSSHVMPVLDPTWEGHVDYNHAAAASTPDSPQLSGYLQWLEERKLEGEPTMTTTTTTTEVNEIDKLAEMFIARCHEKFRLEKQESARRFEEMIARSM Homology
BLAST of CmaCh15G003550 vs. ExPASy TrEMBL
Match: A0A0A0KP26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523130 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.3e-64 Identity = 134/175 (76.57%), Postives = 146/175 (83.43%), Query Frame = 0
BLAST of CmaCh15G003550 vs. ExPASy TrEMBL
Match: A0A6J1HAU6 (uncharacterized protein LOC111462262 OS=Cucurbita moschata OX=3662 GN=LOC111462262 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 2.3e-64 Identity = 132/183 (72.13%), Postives = 149/183 (81.42%), Query Frame = 0
BLAST of CmaCh15G003550 vs. ExPASy TrEMBL
Match: A0A5D3BVA7 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00500 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 9.9e-63 Identity = 139/188 (73.94%), Postives = 150/188 (79.79%), Query Frame = 0
BLAST of CmaCh15G003550 vs. ExPASy TrEMBL
Match: A0A1S3C8P2 (uncharacterized protein LOC103498096 OS=Cucumis melo OX=3656 GN=LOC103498096 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 9.9e-63 Identity = 139/188 (73.94%), Postives = 150/188 (79.79%), Query Frame = 0
BLAST of CmaCh15G003550 vs. ExPASy TrEMBL
Match: A0A6J1JV22 (uncharacterized protein LOC111487754 OS=Cucurbita maxima OX=3661 GN=LOC111487754 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 1.9e-61 Identity = 129/183 (70.49%), Postives = 146/183 (79.78%), Query Frame = 0
BLAST of CmaCh15G003550 vs. NCBI nr
Match: KAG6578664.1 (hypothetical protein SDJN03_23112, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86 Identity = 170/180 (94.44%), Postives = 174/180 (96.67%), Query Frame = 0
BLAST of CmaCh15G003550 vs. NCBI nr
Match: KAG7016204.1 (hypothetical protein SDJN02_21309, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84 Identity = 167/178 (93.82%), Postives = 171/178 (96.07%), Query Frame = 0
BLAST of CmaCh15G003550 vs. NCBI nr
Match: XP_038890518.1 (uncharacterized protein LOC120080048 [Benincasa hispida]) HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65 Identity = 142/187 (75.94%), Postives = 156/187 (83.42%), Query Frame = 0
BLAST of CmaCh15G003550 vs. NCBI nr
Match: XP_022961611.1 (uncharacterized protein LOC111462262 [Cucurbita moschata] >KAG6602421.1 hypothetical protein SDJN03_07654, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 255.0 bits (650), Expect = 4.8e-64 Identity = 132/183 (72.13%), Postives = 149/183 (81.42%), Query Frame = 0
BLAST of CmaCh15G003550 vs. NCBI nr
Match: XP_011655408.1 (uncharacterized protein LOC105435523 [Cucumis sativus] >KGN51368.1 hypothetical protein Csa_008863 [Cucumis sativus]) HSP 1 Score: 255.0 bits (650), Expect = 4.8e-64 Identity = 134/175 (76.57%), Postives = 146/175 (83.43%), Query Frame = 0
BLAST of CmaCh15G003550 vs. TAIR 10
Match: AT3G57950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 122.1 bits (305), Expect = 4.6e-28 Identity = 79/191 (41.36%), Postives = 105/191 (54.97%), Query Frame = 0
BLAST of CmaCh15G003550 vs. TAIR 10
Match: AT5G06790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 112.5 bits (280), Expect = 3.6e-25 Identity = 76/206 (36.89%), Postives = 104/206 (50.49%), Query Frame = 0
BLAST of CmaCh15G003550 vs. TAIR 10
Match: AT2G42180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 72.4 bits (176), Expect = 4.2e-13 Identity = 65/183 (35.52%), Postives = 91/183 (49.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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