CmaCh15G003130 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G003130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 1454929 .. 1455566 (+)
RNA-Seq ExpressionCmaCh15G003130
SyntenyCmaCh15G003130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATGTCACAGGGGTCGCATCTGCATCTAATCGCTATCACTTTGACGCCATGGCCATTGTTCTGTTCTTGGATCTCAAAGGCTTAATATATTTTTACAAATTTTTAATAAAAGCTCCATTGAAAATTAAAATTTTAAAATCATTCTTAGTACTTTTATTTCACATATATAGATGAAAATTATGTTCAAACCTTTTAATGTGAGTATTTTTAAAAAATATATATTAATGAAACTTTTATAAACTTTTTTTTTTTTTTTAAATATTTAAGTATATTTTTTAAAACATTTAAGATGTTATGGAATTTTTTTATTTTTATTTTTATTTTTTTAAATTCAGATAGTCATTTTTATTAATTTAAAAATCTTCAGCCTCACCCCAAACCCTAACTATTGTTCAGCCCCTCAAACCCTAATTATTCTTCAGCCGCTGCACCCTGCCCCAAACCCTATTTATTCTTCAGCCACCCCTTGCTAATATTTCTTTTTCAGCCACTGCTCCTTGCACTGCCGCTCCCCACCGCTCGTCGCTATCCGCTTTCTCCCGCCGAATCGACGCCGCTCTCTTTCACATTCGCTTCTCCCACGCCGCCGTTGATATAGCGCTGCCGCCGCGCGTTTTTCAGATCAGGTTTTGA

mRNA sequence

ATGATCATGTCACAGGGCCGCTGCACCCTGCCCCAAACCCTATTTATTCTTCAGCCACCCCTTGCTAATATTTCTTTTTCAGCCACTGCTCCTTGCACTGCCGCTCCCCACCGCTCGTCGCTATCCGCTTTCTCCCGCCGAATCGACGCCGCTCTCTTTCACATTCGCTTCTCCCACGCCGCCGTTGATATAGCGCTGCCGCCGCGCGTTTTTCAGATCAGGTTTTGA

Coding sequence (CDS)

ATGATCATGTCACAGGGCCGCTGCACCCTGCCCCAAACCCTATTTATTCTTCAGCCACCCCTTGCTAATATTTCTTTTTCAGCCACTGCTCCTTGCACTGCCGCTCCCCACCGCTCGTCGCTATCCGCTTTCTCCCGCCGAATCGACGCCGCTCTCTTTCACATTCGCTTCTCCCACGCCGCCGTTGATATAGCGCTGCCGCCGCGCGTTTTTCAGATCAGGTTTTGA

Protein sequence

MIMSQGRCTLPQTLFILQPPLANISFSATAPCTAAPHRSSLSAFSRRIDAALFHIRFSHAAVDIALPPRVFQIRF
Homology
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BLAST of CmaCh15G003130 vs. NCBI nr
Match: KAG6578625.1 (hypothetical protein SDJN03_23073, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 19 PPLANISFSATAPCTAAPHRSSLSAFSRRIDAALFHIRFSHAAVDIALPPRVF 72
          PPL +ISFSATAPCTAAP+RSSLSAFSRRIDAA FHIRFSHAAVDIALPP  F
Sbjct: 6  PPLIDISFSATAPCTAAPNRSSLSAFSRRIDAAPFHIRFSHAAVDIALPPPAF 58

The following BLAST results are available for this feature:
BLAST of CmaCh15G003130 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G003130 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G003130 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578625.12.3e-1588.68hypothetical protein SDJN03_23073, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh15G003130 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G003130.1CmaCh15G003130.1mRNA