CmaCh15G002960 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G002960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CLAVATA3/ESR (CLE)-related protein 25
Location	Cma_Chr15: 1388821 .. 1390399 (+)
RNA-Seq Expression	CmaCh15G002960
Synteny	CmaCh15G002960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACACAATTCTACTTGATCTAACTCACTATAACTACAGATATGTTTTGCTTATTTTCCTTTTCTTCTGCTCTTTGCAAGTATTGTCTTGTACCATTCTTGTCCCTTTTCCTGTCTTTTAATCTTTAATCTACTTAAATTTGGTGGGTTTTACGATTTTCTGTACAATTCTACAAAGAAATGCCTCGACTTTTTTAGAACAAGTCCCAGTCGAAACCTAGCTGTTAATGTTGCACTTCTTGTATCATCTTGAGGACGGAAGTTTGACCATAGAATTGTCCCTAAAGAAAAGGCAAATTAACGCGTTTGAAGTTGACTGCCCAACTTCAATTAGAGGAAAGAAAATGGACTGTTTTATTTCTATTAGTAAATGTATGAACTGTTACTCCATTGCTTTAATCACTTCCAATTGTCGTTATGAGTTTGCTCATTTGGTCATTTGAAAGTAGTGTATTGCTCTGCCTCGACGCAGTTTGCTCGCATTCTTTTCCTTCTTTCTTTCTTTATTTGGCTGTAGCAATTTTAGTTGGTAAAAGAAATGCCGGAAACTATTTCAATTGAGATTTGTTGAAGTTGATGATAGACACTTTTTCTTTCAAAACAAAAAAGAACAAAAGTTCTTTTTTTTTTTCTTTCTTTTTTTTTCTTATCACTCTTTCTCTTATTTTTATGAGCTACTAAAGGTATTGGGGCAAGATCTTGACTGCTTTAGTTCGTAAGCTTTGAGATTATAGATGGATTACATAATATTGTTTCTTTTCGCTACAATACCATTGCAGACATGATAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTACATAGGCTAATGAATTATATTGCTCAAAATGTGAATTCAGGAGAGTAGGGAACTCTAAACAGCCACCAATTCGAGCCTAAACAAATCCTGGAGATGGATCAGCTGCAGAAAAAGATCAGAAATGAACAGTTATTTTTTTCTTTTACCTGTAAATGTTCATCTTTGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCTGAAAGCACTGACATGGCAACTGTTCTTAGTGGGTTCTTGGGAGTAGAAAAGAAAGAGATTTTGAATAACTTTCCCAGAAAATTCTCAGCTGTTGCTAGTCATCATTTACTTGATCTCAGATGCAAAGTGTTTCTTTCTTTCCTCGGAATTTGAAGATTTTATAATGTTCCTTGTCGTTCATGCATAACTTGAATTTTCCATTGATATCTTTCTTTGTTTTTTTTTTCTCCCCATTGTCACATTCTTAAAAAAGTAGAAAATGATTGATTCTGGTAATCGATAAATTGATCATCCATTATCTCG

mRNA sequence

ATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTAGGGAACTCTAAACAGCCACCAATTCGAGCCTAAACAAATCCTGGAGATGGATCAGCTGCAGAAAAAGATCAGAAATGAACAGTTATTTTTTTCTTTTACCTGTAAATGTTCATCTTTGCTCTCCATCAAGGATAGATCCTGCATTGAGACTTTTGTCCCTGAAAGCACTGACATGGCAACTGTTCTTAGTGGGTTCTTGGGAGTAGAAAAGAAAGAGATTTTGAATAACTTTCCCAGAAAATTCTCAGCTGTTGCTAGTCATCATTTACTTGATCTCAGATGCAAAGTGTTTCTTTCTTTCCTCGGAATTTGAAGATTTTATAATGTTCCTTGTCGTTCATGCATAACTTGAATTTTCCATTGATATCTTTCTTTGTTTTTTTTTTCTCCCCATTGTCACATTCTTAAAAAAGTAGAAAATGATTGATTCTGGTAATCGATAAATTGATCATCCATTATCTCG

Coding sequence (CDS)

ATGGTGAGTAACTGTAGGTTCTTAAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTGTCATCTGGTTTTCTTTTATTGGAGTGATTGATAATGCTAGCCCAGCATCCAGAAGAGCGACAGACGTGCAGTGGAAGATGATTGGAAGAGGGAAGCATGTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTAGGGAACTCTAAACAGCCACCAATTCGAGCCTAA

Protein sequence

MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA

Homology

[Close]

BLAST of CmaCh15G002960 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-09
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 8  LKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ-WKMIGRGKHVFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N++P+   + +V+  +  G+  ++FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVGNSKQPP 88
          +VPNGPDPIHNR+   S++PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of CmaCh15G002960 vs. ExPASy TrEMBL
Match: A0A0A0KS32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]

BLAST of CmaCh15G002960 vs. ExPASy TrEMBL
Match: A0A6J1HAQ4 (uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 27  GVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQP 86
           G IDNASPASRRATD+QWK+IG  KHVFHWHSDFYSVSKRRVPNGPDPIHNRRV NSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PIRA 91
           P+RA
Sbjct: 110 PVRA 113

[Close]

BLAST of CmaCh15G002960 vs. ExPASy TrEMBL
Match: A0A6J1HAS8 (uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.2e-26
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 27  GVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQP 86
           G IDNASPASRRATD+QWK+IG  KHVFHWHSDFYSVSKRRVPNGPDPIHNRRV NSKQP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PIRA 91
           P+RA
Sbjct: 110 PVRA 113

[Close]

BLAST of CmaCh15G002960 vs. ExPASy TrEMBL
Match: A0A6A1VIF3 (CLAVATA3/ESR (CLE)-related protein 25 OS=Morella rubra OX=262757 GN=CJ030_MR6G008522 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.4e-19
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDN----ASPASRRATDV--QWKMIGRGKHVF 60
          MV + R  ++LFG  LF+GVIWF  +G++ N     S  + R+T++   WK+IGR KHV 
Sbjct: 1  MVGSGRLFRALFGTLLFVGVIWFLTVGILANHASKTSTITARSTEIFKYWKLIGREKHVV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
          HW SD   VS+RRVPNGPDPIHNRR   +++PP R+
Sbjct: 61 HWASDLNYVSRRRVPNGPDPIHNRRAAKTRRPPGRS 96

[Close]

BLAST of CmaCh15G002960 vs. ExPASy TrEMBL
Match: A0A5N5GL02 (CLAVATA3/ESR (CLE)-related protein 25 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_036266 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 51/97 (52.58%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDV-------QWKMIGRGKHV 60
          M S  + L+++FGA L LGV WF   G++ N S A + A  V        WK+IGR KH 
Sbjct: 1  MASGRKVLRAMFGALLLLGVFWFFLAGILVNRS-AEKPAVTVSSTEIFKHWKLIGREKHA 60

Query: 61 FHWHSDFYSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
            W S F  VSKRRVPNGPDPIHNRRV  ++QPP RA
Sbjct: 61 VVWDSTFIYVSKRRVPNGPDPIHNRRVVKTRQPPTRA 96

[Close]

BLAST of CmaCh15G002960 vs. NCBI nr
Match: KAG6578608.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.4 bits (490), Expect = 8.7e-46
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF
Sbjct: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
          YSVSKRRVPNGPDPIHNRRVGNSKQPPIRA
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 90

[Close]

BLAST of CmaCh15G002960 vs. NCBI nr
Match: KAG7033147.1 (CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.9 bits (424), Expect = 3.9e-38
Identity = 76/90 (84.44%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M  NCRF + LFG FLFLG+IWFSFIG IDNASPASRRATD+QWK+IG  KHVFHWHSDF
Sbjct: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
          YSVSKRRVPNGPDPIHNRRV NSKQPP+RA
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVRA 90

[Close]

BLAST of CmaCh15G002960 vs. NCBI nr
Match: KGN52425.1 (hypothetical protein Csa_008367 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.7e-38
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIR 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIR 89

[Close]

BLAST of CmaCh15G002960 vs. NCBI nr
Match: KAG7016157.1 (ylbH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 6   RFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSK 65
           +FLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSK
Sbjct: 306 KFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSK 365

Query: 66  RRVPNGPDPIHN 78
           RRVPNGPDPIHN
Sbjct: 366 RRVPNGPDPIHN 377

[Close]

BLAST of CmaCh15G002960 vs. NCBI nr
Match: KAG6602472.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 25  FIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVGNSK 84
           + G IDNASPASRRATD+QWK+IG  KHVFHWHSDFYSVSKRRVPNGPDPIHNRRV NSK
Sbjct: 65  YFGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSK 124

Query: 85  QPPIRA 91
           QPP+RA
Sbjct: 125 QPPVRA 130

[Close]

BLAST of CmaCh15G002960 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 8  LKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQ-WKMIGRGKHVFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N++P+   + +V+  +  G+  ++FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVGNSKQPP 88
          +VPNGPDPIHNR+   S++PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of CmaCh15G002960 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 52.0 bits (123), Expect = 2.9e-07
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 61  YSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 91
           Y  SKR+VP GPDPIHNRR GNS++PP RA
Sbjct: 73  YVASKRKVPRGPDPIHNRRAGNSRRPPGRA 102

The following BLAST results are available for this feature:

BLAST of CmaCh15G002960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFL4	2.3e-09	38.27	CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P...	[more]

BLAST of CmaCh15G002960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS32	3.2e-38	86.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1	[more]
A0A6J1HAQ4	2.2e-26	89.06	uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HAS8	2.2e-26	89.06	uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6A1VIF3	4.4e-19	51.04	CLAVATA3/ESR (CLE)-related protein 25 OS=Morella rubra OX=262757 GN=CJ030_MR6G00...	[more]
A0A5N5GL02	1.8e-17	52.58	CLAVATA3/ESR (CLE)-related protein 25 OS=Pyrus ussuriensis x Pyrus communis OX=2...	[more]

BLAST of CmaCh15G002960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578608.1	8.7e-46	100.00	CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7033147.1	3.9e-38	84.44	CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KGN52425.1	6.7e-38	86.52	hypothetical protein Csa_008367 [Cucumis sativus]	[more]
KAG7016157.1	1.5e-34	98.61	ylbH, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6602472.1	2.6e-26	86.36	CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of CmaCh15G002960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28455.1	1.7e-10	38.27	CLAVATA3/ESR-RELATED 25	[more]
AT1G69970.2	2.9e-07	73.33	CLAVATA3/ESR-RELATED 26	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..90
None	No IPR available	PANTHER	PTHR34277:SF18	CLAVATA3/ESR (CLE)-RELATED PROTEIN 25	coord: 1..90
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G002960.1	CmaCh15G002960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016021	integral component of membrane