CmaCh15G002890 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G002890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 1369283 .. 1370883 (-)
RNA-Seq ExpressionCmaCh15G002890
SyntenyCmaCh15G002890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAATCTCTGTGCCTTCTATGGAAAGTGAGCATAAAAAACCGTTTATCCTCTGTCGCTGGGTGGAATGAAATCGTCTGGGACTTGGAAATATTTCTCCCTGAAGACCACCATAGCTTTACCCCTTCGTATTGTTCTGCAATTTCTTCGTGGTCGTCCATGGTGAGCACCAGAGACTGGTTGTTCTTCATGGAATCAGCCTTGAGGCGTTTGGCTTGCGACGAGGAGTTTCTGGAGAGGTAATTTTGAATGGCGATGTAGGCTTCACTGCGGGTGAAACCTTCGCCTGTGAACTCATTGAAGGTGATTTGAACGAAGGGATAAAAGAAACTGACAAATCTATGAGAATATTTCTCGAAACAGGCACGAAGCTCAACTGGGAAATACTGCTGAAATAATGCCCAGACGAACACCAAACTGCCAATTATCGATCCAACACGGGTAAATAGTTCTGCAAATGTCATTTTTCTTCAATTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCGGAAGTATCTCTTGTTCAAGCTTATAGAAAAAAGGGTTTTGGGTTGGTTTGGTCTGGCGTGTCATTATCTTGAAATTCAAAGCTAAAATAATGTTTGAAAAATATTTGCTCAATTTTCAAAGTTTCAGATTAGGGATTGACATTAATTGAGGTTTGGCGATTTCGAAGCAGGCAGACAAACGAATTGAATGGTTTTCTGCGGTATAAGCAATTGTATTGCGCCTGCTCTGCTATACTCTTTGAATCTCAATTCAATTTTTTCATTTTAATCTTTCTGCAATTTGTTTCTTTGTCTTTGTTAGGAACCTCTTTGTTAGGAACCAACCAGGTATTATATTCACTTTGAAAGTGATTTTACTTTTGATTTCTCTAAAATGACTGGTACATACTTATTTATAAATTCATGATTATTTTTTTAATTAGTAAATTACATGGACATAGAGTTTTCTCTAAGGCCTATGGAACTCGAGAACAATCTCTTCTCAATCGAAACTCCACTCCTCTAGATTCCTAAAAAAAATACGACACTTTGAATCACTTTTAACTCTATCATCCTGCTCTCGAACTTTTTTAGAATTTACTTACATGATGGTACAATAGTGGTTGACCCACTTAACAAATATTTTTTTTTCTTATGAAAGGTATCTTTTTCTAATGCAATGTCATAAAGTTTGGGGGTGTATCTGTGACCGAGACGGATCCATGATGGAGTGAAAGGGGACACGTGCCCCATTATTTTCATTTAATACATAGTTGGTGAGAAATATTTAATGAACATTATTTATTCCATCTCCACTGGGTGCTGCCAAAACCGTGTGCGGGAATGGTAATTGGTTGCTGCACATCTTGTGAACCAGTTGTTCTAAATCCCTCCACGACGACCCATTCTCCGCCATGGCTTTCTTCGCCATCGCTGAAATCTCCATTGCTCTCTTCCTCACCTCCTTCCCCTTCTCTCCCTCCATTAACTCTCTAACCAATCTCTGTAAGCCCTTCCCTTTCACAAACCCCTTCACCAACCCTCCACACTCCACAGTTCTCATCCCAGCCCTCAACTCCTCCACCACCATCCTCGCGTTCAAAGCTTGA

mRNA sequence

ATGATGAAATCTCTGTGCCTTCTATGGAAAGTGAGCATAAAAAACCGTTTATCCTCTGTCGCTGGGTGGAATGAAATCGTCTGGGACTTGGAAATATTTCTCCCTGAAGACCACCATAGCTTTACCCCTTCGTATTGTTCTGCAATTTCTTCGTGGTCGTCCATGGTGAGCACCAGAGACTGGTTGTTCTTCATGGAATCAGCCTTGAGGCGTTTGGCTTGCGACGAGGAGTTTCTGGAGAGGCACGAAGCTCAACTGGGAAATACTGCTGAAATAATGCCCAGACGAACACCAAACTGCCAATTATCGATCCAACACGGTTGTTCTAAATCCCTCCACGACGACCCATTCTCCGCCATGGCTTTCTTCGCCATCGCTGAAATCTCCATTGCTCTCTTCCTCACCTCCTTCCCCTTCTCTCCCTCCATTAACTCTCTAACCAATCTCTGTAAGCCCTTCCCTTTCACAAACCCCTTCACCAACCCTCCACACTCCACAGTTCTCATCCCAGCCCTCAACTCCTCCACCACCATCCTCGCGTTCAAAGCTTGA

Coding sequence (CDS)

ATGATGAAATCTCTGTGCCTTCTATGGAAAGTGAGCATAAAAAACCGTTTATCCTCTGTCGCTGGGTGGAATGAAATCGTCTGGGACTTGGAAATATTTCTCCCTGAAGACCACCATAGCTTTACCCCTTCGTATTGTTCTGCAATTTCTTCGTGGTCGTCCATGGTGAGCACCAGAGACTGGTTGTTCTTCATGGAATCAGCCTTGAGGCGTTTGGCTTGCGACGAGGAGTTTCTGGAGAGGCACGAAGCTCAACTGGGAAATACTGCTGAAATAATGCCCAGACGAACACCAAACTGCCAATTATCGATCCAACACGGTTGTTCTAAATCCCTCCACGACGACCCATTCTCCGCCATGGCTTTCTTCGCCATCGCTGAAATCTCCATTGCTCTCTTCCTCACCTCCTTCCCCTTCTCTCCCTCCATTAACTCTCTAACCAATCTCTGTAAGCCCTTCCCTTTCACAAACCCCTTCACCAACCCTCCACACTCCACAGTTCTCATCCCAGCCCTCAACTCCTCCACCACCATCCTCGCGTTCAAAGCTTGA

Protein sequence

MMKSLCLLWKVSIKNRLSSVAGWNEIVWDLEIFLPEDHHSFTPSYCSAISSWSSMVSTRDWLFFMESALRRLACDEEFLERHEAQLGNTAEIMPRRTPNCQLSIQHGCSKSLHDDPFSAMAFFAIAEISIALFLTSFPFSPSINSLTNLCKPFPFTNPFTNPPHSTVLIPALNSSTTILAFKA
Homology
[Close]
BLAST of CmaCh15G002890 vs. ExPASy TrEMBL
Match: A0A7J6H858 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_015539 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-08
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 109 SKSLHDDPFSAMAFFAIAEISIALFLTSFPFSPSINSLTNLCKPFPFTNPFTNPPHSTVL 168
           SK+ H+DP S+ A   I   S A FLTSFP SPSINS T L     FT PF +P   + L
Sbjct: 7   SKACHEDPPSSTALCPITATSSAFFLTSFPISPSINSFTILLTSSLFTTPFNDPSQLSTL 66

Query: 169 IPALNSSTTILAFK 183
            P L SSTTI AFK
Sbjct: 67  NPTLISSTTIFAFK 80

[Close]
BLAST of CmaCh15G002890 vs. ExPASy TrEMBL
Match: A0A7J6H7U4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_015540 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-06
Identity = 39/73 (53.42%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 109 SKSLHDDPFSAMAFFAIAEISIALFLTSFPFSPSINSLTNLCKPFPFTNPFTNPPHSTVL 168
           SK  HDDP  + A  AI   S A FLTSFP SPSINS T L     FT PF +P     L
Sbjct: 9   SKVSHDDPPFSTALCAITANSSAFFLTSFPTSPSINSFTILLTSSLFTIPFNDPSQLLTL 68

Query: 169 IPALNSSTTILAF 182
            P L SS TI AF
Sbjct: 69  TPTLISSATIFAF 81

[Close]
BLAST of CmaCh15G002890 vs. NCBI nr
Match: KAF4390649.1 (hypothetical protein G4B88_015539 [Cannabis sativa])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 0 

Query: 109 SKSLHDDPFSAMAFFAIAEISIALFLTSFPFSPSINSLTNLCKPFPFTNPFTNPPHSTVL 168
           SK+ H+DP S+ A   I   S A FLTSFP SPSINS T L     FT PF +P   + L
Sbjct: 7   SKACHEDPPSSTALCPITATSSAFFLTSFPISPSINSFTILLTSSLFTTPFNDPSQLSTL 66

Query: 169 IPALNSSTTILAFK 183
            P L SSTTI AFK
Sbjct: 67  NPTLISSTTIFAFK 80

[Close]
BLAST of CmaCh15G002890 vs. NCBI nr
Match: KAF4390650.1 (hypothetical protein G4B88_015540 [Cannabis sativa])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-05
Identity = 39/73 (53.42%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 109 SKSLHDDPFSAMAFFAIAEISIALFLTSFPFSPSINSLTNLCKPFPFTNPFTNPPHSTVL 168
           SK  HDDP  + A  AI   S A FLTSFP SPSINS T L     FT PF +P     L
Sbjct: 9   SKVSHDDPPFSTALCAITANSSAFFLTSFPTSPSINSFTILLTSSLFTIPFNDPSQLLTL 68

Query: 169 IPALNSSTTILAF 182
            P L SS TI AF
Sbjct: 69  TPTLISSATIFAF 81

The following BLAST results are available for this feature:
BLAST of CmaCh15G002890 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G002890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6H8587.1e-0854.05Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_015539 PE=4 SV=1[more]
A0A7J6H7U48.7e-0653.42Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_015540 PE=4 SV=1[more]
BLAST of CmaCh15G002890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4390649.11.5e-0754.05hypothetical protein G4B88_015539 [Cannabis sativa][more]
KAF4390650.11.8e-0553.42hypothetical protein G4B88_015540 [Cannabis sativa][more]
BLAST of CmaCh15G002890 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G002890.1CmaCh15G002890.1mRNA