CmaCh15G002140 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G002140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 1046069 .. 1048092 (-)
RNA-Seq ExpressionCmaCh15G002140
SyntenyCmaCh15G002140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGATGATGCTGAGAGTCCCTGGTGCAGACTGACCACTGTGTTGTATATAAACATTAGGTTGTCATCTCTTAGAAGGCGCTGCTCCGGTCGAGTTCAAACGAGTTCTCAACTCCAATATGCAGAAGAAAATGGTCAGACAAACAAGACTCTTTGGACACAGCAAAGCAATAGTTATCATGTACTTGACCAGGTCTGCTAAAACTTCCCATCTGCTTCTGTTCATCGAAGACGGTTGAAGTTGTCGAATGGACCATATTTTCCAGAAAGGAAAGCCTGATACGAATTGAGATTGCCACAGTAACAAAGGATTGCTTGTATATGTCCCCCTTACTCTAATATTCAGATGAAGTGTGGAAGTGATGAAAAGGATCAACATTGCCATCTTCTTAACCCATCACAAGTTCTGCAGCTATAATTCTTATAAACTGTTGCAGTCTGCTGCTTCATGTATATGTAAATGTTTGTGCATGTGCTATGCATAATGGACTAGCATTCTGCCCTCTGAATCTGCTGATTATCTTGTCGGAAGTCCGAGTTCTATATTAACTAGAAAATGACGTTATACATCAATTTGATATGATACGATAGAGGGGTACTAGTGCCAGTGTTACCTAAGAATAAAGTTCATTCACTAATGATAGTTTATTATAAGCTCTAGTTTCCAAGGATGAGTTGAAAAACATCATTGAAATCTATGTAATTGGAAAACAAGGCTTCCAATCAAACCACATTATAGTTTCTGAGAACTTGAAATATTGTTGTTTTGTTCGCCGATCGTCTCAGTTTACAGCTGCTCGAGAATGATTTAGCGAAAAAACTTCACATGAAGATGTGAAAAAATGGTTCTTCTTTTTTTACTGTTCAATCTAATCTGTCTCATTCATCTTTCGGATCGGCTTTAGTATCCAAGTCGATGGAGAAACACGAGAAATGATGCTTCAGAACTTGCAAGAGAATCTTGCTGCTAAATGCTTAATGTTAGCTTCTCGTTTCAAAGAAAAACTAGACAGTGACATCATACCTCGTTGAGGAAAACTAGAAATATATAGCTCAAAGTCATTATTGTGGTTAATCAAAGTCATTGTTGTGGTTAATTGAATTAGTCGACTTATATTTCATTAAGAACCTGTTGCTTAGCAAAGATAAAAATATCATTCAATTGATATCTCTAAAACATTGATTTAAATTATTTTTATCAATTTTCACTCTAGAAGTAGTAGTTGCTGTGATACTCGATTGGACTTACGATCACATAGAGGTATATATATATATATATATTATTCTTATTAACTAAGACATGAGAAATTAAATTGTTACTAGAAAAATGAATTTTAGGAAATTTTGAGGAAGAGAGTCATAAGATTAATAAATATATAAATGGGTTTATATTATTATAATATTTACAGTTATATATTTTTGTGTAATGGGTTTTGAAGTAGCGGTTGTTGAATCGGAAAAACCCGAACGTGATCCGCGACTTTTGTTGTCTGTATGAACAAAAATATTTTCTTTCCTCCTTTTTTTTTATTTTTTTAGAAACAAGAAATAGCCTTAATCCACCCTGTTATTCCACCTTTCTTGATTCTGGTAGGCGTCAATTTCAATTCCCAATCGAAATGAATTTCTGCGGAAAATGAAGCAATTTCGTCTCGAATTCTTGCACAGTTTCCGCCAGATCCTGTATACTCTCCATAACAAAGCTCCATTGATTCTTCTTCAACCAGCTCCTTCCTCCTACCATAGTCAATCTCTCTCTCTCTCTCTCTCTTCGTTTTCATGTGAATTGCCTGGTTTCTAGGGATTTCTACTCCGATCTTTCTGCTTTAGCTGGTTTACTTCTGGGGTTCTGCCTATGGTAACCGAGCGTGCTCAAGCAGCGATCTCCTTCGTGTCAGTTGTCAAGAGGGGTTTTTGCCTACAAGCTTGAGCTGTTGGAGGAAGATCAGACTCTGCGAGTCACTGCGATTGGAGATTCATCGGAGCTTCACTAAAGGGGGTTGTGAAGTTAATGCTAGCTAA

mRNA sequence

ATGGAGGATGATGCTGAGAGTCCCTGGTGCAGACTGACCACTGTGTTGTATATAAACATTAGGTTGTCATCTCTTAGAAGGCGCTGCTCCGGTCGAGTTCAAACGAGTTCTCAACTCCAATATGCAGAAGAAAATGGTCAGACAAACAAGACTCTTTGGACACAGCAAAGCAATAGTTATCATGTACTTGACCAGAAACAAGAAATAGCCTTAATCCACCCTGTTATTCCACCTTTCTTGATTCTGCTGGTTTACTTCTGGGGTTCTGCCTATGGTAACCGAGCGTGCTCAAGCAGCGATCTCCTTCGTGTCAGTTGTCAAGAGGGGTTTTTGCCTACAAGCTTGAGCTGTTGGAGGAAGATCAGACTCTGCGAGTCACTGCGATTGGAGATTCATCGGAGCTTCACTAAAGGGGGTTGTGAAGTTAATGCTAGCTAA

Coding sequence (CDS)

ATGGAGGATGATGCTGAGAGTCCCTGGTGCAGACTGACCACTGTGTTGTATATAAACATTAGGTTGTCATCTCTTAGAAGGCGCTGCTCCGGTCGAGTTCAAACGAGTTCTCAACTCCAATATGCAGAAGAAAATGGTCAGACAAACAAGACTCTTTGGACACAGCAAAGCAATAGTTATCATGTACTTGACCAGAAACAAGAAATAGCCTTAATCCACCCTGTTATTCCACCTTTCTTGATTCTGCTGGTTTACTTCTGGGGTTCTGCCTATGGTAACCGAGCGTGCTCAAGCAGCGATCTCCTTCGTGTCAGTTGTCAAGAGGGGTTTTTGCCTACAAGCTTGAGCTGTTGGAGGAAGATCAGACTCTGCGAGTCACTGCGATTGGAGATTCATCGGAGCTTCACTAAAGGGGGTTGTGAAGTTAATGCTAGCTAA

Protein sequence

MEDDAESPWCRLTTVLYINIRLSSLRRRCSGRVQTSSQLQYAEENGQTNKTLWTQQSNSYHVLDQKQEIALIHPVIPPFLILLVYFWGSAYGNRACSSSDLLRVSCQEGFLPTSLSCWRKIRLCESLRLEIHRSFTKGGCEVNAS
Homology
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BLAST of CmaCh15G002140 vs. NCBI nr
Match: KAG7016089.1 (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 8.9e-16
Identity = 59/123 (47.97%), Postives = 72/123 (58.54%), Query Frame = 0 

Query: 1    MEDDAESPWCRLTTVLYINIRLSSLRRRCSGRVQTSSQLQYAEENGQTNKTLWTQQS--N 60
            MEDDAESPWCRL T+   N   +S+ RR     +  S   Y  E     +  W  Q   +
Sbjct: 993  MEDDAESPWCRLATICK-NFPSASVHRR-----RLKSNGPYFPE-----RKAWYDQDCHS 1052

Query: 61   SYHVLDQKQEIALIHPVIPPFLIL-LVYFWGSAYGNRACSSSDLLRVSCQEGFLPTSLSC 120
            +  +L   Q    ++   P  +   LVYFWG AYGNRACSSSDLLRVSCQEGFL TSLSC
Sbjct: 1053 NKGLLALLQACNCLYGTYPISVSAPLVYFWGFAYGNRACSSSDLLRVSCQEGFLLTSLSC 1104

The following BLAST results are available for this feature:
BLAST of CmaCh15G002140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G002140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G002140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016089.18.9e-1647.97DNA-directed RNA polymerase 2, chloroplastic/mitochondrial, partial [Cucurbita a... [more]
BLAST of CmaCh15G002140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G002140.1CmaCh15G002140.1mRNA