CmaCh15G002090 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G002090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 1013466 .. 1017369 (+)
RNA-Seq ExpressionCmaCh15G002090
SyntenyCmaCh15G002090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCTAAAGAAAGGTGGAGGAATAAGGTGATCGACATTATCATGCTCTTACGCTTAAATCAATATTAGATCTAAGCTAATAGAGTTGCGACCATAAATCAGGACACTTTATGTACTTTTAGTGCGAAAAGTAATTAAGAGAACACAATTTTTTCTGAAGGGTCAACAAAAGTTGGGTGATTTCCCTCTCTGGATGCACCAAAAATCCCTTTTCATCCTCTCCCCATCTCTCATCTGCGCATTTTCAGGTATGAATTTCCCTCTTTAGTCACTTCTATGGAGGAACAGTTAAATTAATGTGTCTTGGAAATGCATTTAGATCATCTTCATGTTTGTGGTTTTTCTGGAAAGTTTTCTTGGAAGGAAGCTTGTTCTGATGTTCGATCTTCGATGGATTTTGCTATCCTGTTCTTCCAAATTCTTTGTCCCGCTCTTTCCTCGGATTTTTTTCCACCCAATGTTGATTTTGCGATTTTAACTCTCCAGCCTTAGATGAAGACTTATCACAGTTGTTGGAATGTATGCTAGATTTGCTTGCTGGGTTCTTGCTTGGGAATTTACTACTAGAAACTTTTCGAAAAGAAATCCAGAAACGATGCTTTTATTCATGGGTTATGAACTCCATTGGCTCAAAATTCCCCAAGCATTCAAATGGAACAGTGAAAATGGAGTAAATTCCTTTTGGTTTTCTATAATGTATCTGAATATGGGCACTAGAAATTAGCTCTCAAGATTTCATCAGTTGGCTATGAGATTTCATCAGTCTTCTATGCCTGGCTTTACCGTGAATTGAGTGTTGGCACTCTGCCGATTAAGTTCATATGTTTTCTGTTGGGGTTATTGTGTGTGCTGTGGGGTTATATATTCCACCCAGTTTCAATAAATTCCGTGGAGAACTTTTGACCATTTTGATTAGAACTTCAGCATCTGGTTTGCACAAAATTGGTCTTAAGAGTTCTAAGATTTGGACTGATGGCCGGAAGTAGCCCATTAACTCTGGTAAGATGTGGATCGAACCGGAAATAGGGAGGAACGAATCATCTTTTCTCCAAGAACTACAACCCAGCAGTCACAAAACAAACACTCAAAAGAGACAAAAGGGTTGACTCCTCCACCCGTCTACATATTAGAAAGCGCATGATGAAACCTGGCTGAGACTAATGATACATGAGGACATTAGACATTAAGTAGAGGAAGCCCAAGCCCAAGTGGTGTAAATATGAGTTAGGCTATGATTACAAAATATAATTGTGGAGGACCAAGTAGAAGCAAAAAGAGTGGCCAAGTCCCAAAAAATAACCATGTTAGTTTCTTGACCAAGAAAAATTCTAGCATTTCTTTCAAACCATAGTCTCCAAAGGAGGGCAAAGACACGCCCGTTGTACCTCTCAAGGTTCTTGTTATTACGTTGGGTTTTAAAGTTAGGATAACCAAGAGTTTCGTTGCCTATGCCATATCTATTGTCTCCAATCGAATGACTGTTAGCTTTACGAGTTCTTTCTCTTCATGATTTACCCCTGAAGACTTAGGTCTCCTCCTGGGTTGATCCAAATACTCCCACTTTAGTTAGTGATTGATGAACTGTGCAGAAGATTACGAAAAAACCTTCTGCACAGTTCATCAATTGTGAAGGCAATTGACTTATCTTCTCAATCTTCTTGTGCTCAAATCTTTGGAACACAACTAGATTTGGCTGGTTGTCCTTGTATTTTGTGTGCTGTTATCAGATCGGTGTGGTTCTATAACATCTGAATTTAGAGGATTAGTAGTTGTACACTACCAGAATTCAGCATTGGTTTGTATTTTGAAATTAGCAAAAGATGCTCAAGAATATGTTAAAGAAACAAAAGGTGAAAAGTGTCTGTGTTATGAAAAAAAATTAAAAAGGAAAAGAGTGGTAGTCATTGGTCAACAGAAGACTATTCACAATCATGTTACTCTGGTCTATTCACAAACGTGAAACCTCTCAAAAAGCTGTTAGCAGTGCTCAAAATTTGATTGGATATTTTTTTGTTCGTTTTAATTTTTAAGGGTAATCTGTAATAGCCAAGACCATCCACCACCACTTATTTCTCCATCACATATAAATAATCCAATCATTTTGCTCATTGCTTTCCTTGTTCAGTACACTCAACATCACGATTGCTACTATCTTCACTGCACAATATGAAATTTAATCAGCGTAGTTACTGTCAAGAAAAATTTTCCTGTGCTGGTTTTTCTTAAACACGTCAAATTTGTAAGCAACTTCATTGGTAAAATGAAATGTACAAAAGTAAGGAACAGCTGAAAAAAATCCTGTCTGAGAAGCTACAGAAACGACACGCAATCAGCTAAACAAAGAAATAAGATAGTTGCAAAAATCTTTAGAAAACTGTTTCAAGAGGAAGCCAAATGAACGAAACTATCCTGATAATCCTCCCAAAGCCTCATAATATCAACACTCCTCTCACCATCCACACCACTCGAAGAGGATACCAAGTTGGGGTGAGCCAAAGAACCATTGCCCATAATTTGTTGTCCTGTATTAGTTGTGTATTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTGTCATTAGTTTTTAGAACTATATTTGAAATAAAATTAAGATGGATCTCTCACTGTGTTTCCATATGGAGCTAACTCAGAAGATCTAAGCTGGCTTTGTATGCCAAAAGTTAAAATCACAATTAAGCATTAATCAACGAAAATGCTCAAACAGTAGTTATTGCAGTTCTTCTTTACGTGCATGATGTTACAGACTGACCGGAGGAAAAGACTGAAGACAGAAGAACCATATATGGAGACAGGGACTGGAAAAAATTTCCTCCTCACCCTGGCTTATCTTGGTGCAGACTCAGCTCTCGGATGGTGTGTTGGGGGGGATTTCTTCAAGTTCTCTGAATTTGGGGTAAGGATTATTGACCTGTAGTTCTGTGATCATTTGACGGAGTTCAGAAGTCTGCTCTTTGAGTTGAGCATTTTCTTGAACAACCTTGTCATGGCAGTCTGAAACTTGGTTCAACTTATCTATAAGCTGATGGTTCTCATTCCGAAGCCAAACCACTTGAGACCAAAGCTCGTCCAAATGCTTCTGTTTGCGCATACGTGACCGGCGTGCCGACTCTCTATTGGAGACCATCCTTCTCTGCTTCCTCTCGTCAATGAGGCTTTGCTGTTGCTCATCTGCTTCATCAGAAGTTGAATTGCTACTCAAGCATGGATGTCGATTAAAATCTTGGAACTGAGAAGAACCTTGGAAGTTATATAGAGGATTGGAGAGTTCGTTAAGTTGCATTGTAGATAAGTTGTTCTGAGCCATGGGAAAGTGAGTAGCATATGGAGATAAATTGGAGGGGATGAGATATTGGAGACTTGTGACTTCACCAGGCTGCATCTTTTAGGCCTTATTGAAAGCTTTCTGGGTCTTTGAAGGGGAGAAGATATTGATTTGGGAGAATGGGAAGTTTGGTGGTGAAGATGCTTTATAGCATGTAAAAGGTCTCATTGGCCCACTCTCAAGAATGTGGATGATTTTGAGAAAGTTTGTCAGAGCTTGAATCACTTGAATATCATGCAGATCTTGTCTATGTCCTATTATGGCACGGCTTCTTTGCTTTCATATCATGAGATCATTCAGTTACTCTACTATATCTGTTGTGTATCTTCCTGCTCGTTATGGCTACTCGATGTCGAACAGTATGTGTTTGTGATATATGCATGATTCATATATATATATACATGAGAATTGATTATCTCTGTGATAATAGTTTCACATCATATCTTGCTTACATCAGAGAGAGCATACATATTGTGGGAAGTATAATTATTGTTATGATAGAATGGTTAGAAAAAGAAGAACGGTACATCAAAGGATGTGGAGAAGTCAATCTAA

mRNA sequence

GACCTAAAGAAAGGTGGAGGAATAAGGTGATCGACATTATCATGCTCTTACGCTTAAATCAATATTAGATCTAAGCTAATAGAGTTGCGACCATAAATCAGGACACTTTATGTACTTTTAGTGCGAAAAGTAATTAAGAGAACACAATTTTTTCTGAAGGGTCAACAAAAGTTGGGTGATTTCCCTCTCTGGATGCACCAAAAATCCCTTTTCATCCTCTCCCCATCTCTCATCTGCGCATTTTCAGATCGGTGTGGTTCTATAACATCTGAATTTAGAGGATTAGTAGTTGTACACTACCAGAATTCAGCATTGACTGACCGGAGGAAAAGACTGAAGACAGAAGAACCATATATGGAGACAGGGACTGGAAAAAATTTCCTCCTCACCCTGGCTTATCTTGGTGCAGACTCAGCTCTCGGATGGTGTGTTGGGGGGGATTTCTTCAAGTTCTCTGAATTTGGGAAAAAGAAGAACGGTACATCAAAGGATGTGGAGAAGTCAATCTAA

Coding sequence (CDS)

ATGCACCAAAAATCCCTTTTCATCCTCTCCCCATCTCTCATCTGCGCATTTTCAGATCGGTGTGGTTCTATAACATCTGAATTTAGAGGATTAGTAGTTGTACACTACCAGAATTCAGCATTGACTGACCGGAGGAAAAGACTGAAGACAGAAGAACCATATATGGAGACAGGGACTGGAAAAAATTTCCTCCTCACCCTGGCTTATCTTGGTGCAGACTCAGCTCTCGGATGGTGTGTTGGGGGGGATTTCTTCAAGTTCTCTGAATTTGGGAAAAAGAAGAACGGTACATCAAAGGATGTGGAGAAGTCAATCTAA

Protein sequence

MHQKSLFILSPSLICAFSDRCGSITSEFRGLVVVHYQNSALTDRRKRLKTEEPYMETGTGKNFLLTLAYLGADSALGWCVGGDFFKFSEFGKKKNGTSKDVEKSI
Homology
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BLAST of CmaCh15G002090 vs. NCBI nr
Match: KAG6578525.1 (hypothetical protein SDJN03_22973, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-20
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 42  TDRRKRLKTEEPYMETGTGKNFLLTLAYLGADSALGWCVGGDFFKFSEFGKK 94
           TDRRKRLKTEEPYMETGTGKNFLLTLAYLGADSALGWCVGGDFFKFSEFG +
Sbjct: 60  TDRRKRLKTEEPYMETGTGKNFLLTLAYLGADSALGWCVGGDFFKFSEFGSE 111

The following BLAST results are available for this feature:
BLAST of CmaCh15G002090 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G002090 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G002090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578525.13.3e-2096.15hypothetical protein SDJN03_22973, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh15G002090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G002090.1CmaCh15G002090.1mRNA