CmaCh15G001920 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G001920
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionThylakoid membrane protein
LocationCma_Chr15: 927607 .. 928644 (-)
RNA-Seq ExpressionCmaCh15G001920
SyntenyCmaCh15G001920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATTTATACAAAACACCGTGACTTGGAAGAAAATTATGAATATTGACAAAATAATCATAATCTATTTTGAATTCTTTTCAATTTTATTTTCGGTAGAAAATTACGAATTAAAAAAGGAAAAAAAAAAAGCGGGGAATAATACCGCACAACTTCCGTTCCTGGCGGTGGCAATTTGATTTGGCTCAGCGGGGAATAATAACGCACAACTTCCGTTCCTGGCGGTGGCAATTTGATTGGGAGAGCCAAGTTATTGGTTCATTTTGCAGAAGTCTCGGCGACTAACTATCACATTCTCGGCTAGAGCCGCTGATTCTATGATTCTACTCAGCCGTCTTCCGATCAGCCTCGCCGGACAAAGCAAAAGCCACCGATGACGAATTTTCGCTTGCGAATGTATGTTTCTGACTCTATATGGCTATGGATTCTTGTGAGTATTGACTAGGTAGCACTTGGATTGGAATTTGTGAATTCTTGTAAATATGTTGTAAATATATTTCTCTTGTGAGTGCTTGTGTTGATAATCCCATTCGGAACAGAATTGTAATTTGAATGTTTAGGAGAGAAATATGCGGCCCAAAACGGAGGGAAGCGATTCGACTTGGGGCAGGGATCACTGCAGAAGTCGGTGAGCTTAATGCATTACATAATTTATCATTTTCTTTTGTTTGTAATTGTAACATTGTTAACTGAGAATTTCTTTGAAACTCTTGCAGGGAAGGGAGAGAATGCTCTGTATGAAGTCCGGCTTATTTCTAACACTAATCCCGGTGCTTCGCCATGATAAAGGATATGGTATAATCAAATTCTGCTACATATTGTGGTTTCATTTAGTATACAAAATGTGTGTAGCCATAGAATGTGTTCTTTATGTTCTTTTGCTTTCTATATATTCTCTCTGGGTTAACATATATCCTATCGTGTAACAACCCAAGTCTACCACTAGTAAATATTGCATGTTTTGACTCGTTATGTATCACTATCAACCTCACGGTTTTAAAACGCGTTTACTAGGAAGAGGTTTACAGACCTTTATG

mRNA sequence

ATGCCGTCTTCCGATCAGCCTCGCCGGACAAAGCAAAAGCCACCGATGACGAATTTTCGCTTGCGAATGAGAGAAATATGCGGCCCAAAACGGAGGGAAGCGATTCGACTTGGGGCAGGGATCACTGCAGAAGTCGGGAAGGGAGAGAATGCTCTGTATGAAGTCCGGCTTATTTCTAACACTAATCCCGGTGCTTCGCCATGATAAAGGATATGGTATAATCAAATTCTGCTACATATTGTGGTTTCATTTAGTATACAAAATGTGTGTAGCCATAGAATGTGTTCTTTATGTTCTTTTGCTTTCTATATATTCTCTCTGGGTTAACATATATCCTATCGTGTAACAACCCAAGTCTACCACTAGTAAATATTGCATGTTTTGACTCGTTATGTATCACTATCAACCTCACGGTTTTAAAACGCGTTTACTAGGAAGAGGTTTACAGACCTTTATG

Coding sequence (CDS)

ATGCCGTCTTCCGATCAGCCTCGCCGGACAAAGCAAAAGCCACCGATGACGAATTTTCGCTTGCGAATGAGAGAAATATGCGGCCCAAAACGGAGGGAAGCGATTCGACTTGGGGCAGGGATCACTGCAGAAGTCGGGAAGGGAGAGAATGCTCTGTATGAAGTCCGGCTTATTTCTAACACTAATCCCGGTGCTTCGCCATGA

Protein sequence

MPSSDQPRRTKQKPPMTNFRLRMREICGPKRREAIRLGAGITAEVGKGENALYEVRLISNTNPGASP
Homology
[Close]
BLAST of CmaCh15G001920 vs. ExPASy TrEMBL
Match: A0A1J7HI57 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_32432 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G G+TAEVGKGEN LYEVRLISNT+P ASP
Sbjct: 246 GPGVTAEVGKGENDLYEVRLISNTDPNASP 275

[Close]
BLAST of CmaCh15G001920 vs. ExPASy TrEMBL
Match: A0A5A7TDN5 (Thylakoid membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001820 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G GITAEVGKGEN LYEVRLISN+ PGASP
Sbjct: 265 GPGITAEVGKGENDLYEVRLISNSIPGASP 294

[Close]
BLAST of CmaCh15G001920 vs. ExPASy TrEMBL
Match: A0A1S3CAR1 (thylakoid membrane protein slr0575 OS=Cucumis melo OX=3656 GN=LOC103498589 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G GITAEVGKGEN LYEVRLISN+ PGASP
Sbjct: 265 GPGITAEVGKGENDLYEVRLISNSIPGASP 294

[Close]
BLAST of CmaCh15G001920 vs. ExPASy TrEMBL
Match: A0A0A0KVX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G644000 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-04
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G GITAEVGKGEN LYEVRL SNT PGASP
Sbjct: 265 GPGITAEVGKGENDLYEVRLTSNTIPGASP 294

[Close]
BLAST of CmaCh15G001920 vs. ExPASy TrEMBL
Match: A0A6J1BXU7 (uncharacterized protein LOC111006453 OS=Momordica charantia OX=3673 GN=LOC111006453 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-04
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G GITAEVGKGEN LYEVRLISNT P ASP
Sbjct: 258 GPGITAEVGKGENELYEVRLISNTIPSASP 287

[Close]
BLAST of CmaCh15G001920 vs. NCBI nr
Match: XP_019442794.1 (PREDICTED: uncharacterized protein LOC109347411 isoform X1 [Lupinus angustifolius] >OIW12316.1 hypothetical protein TanjilG_32432 [Lupinus angustifolius])

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-04
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G G+TAEVGKGEN LYEVRLISNT+P ASP
Sbjct: 246 GPGVTAEVGKGENDLYEVRLISNTDPNASP 275

[Close]
BLAST of CmaCh15G001920 vs. NCBI nr
Match: XP_019442796.1 (PREDICTED: uncharacterized protein LOC109347411 isoform X2 [Lupinus angustifolius])

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-04
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G G+TAEVGKGEN LYEVRLISNT+P ASP
Sbjct: 217 GPGVTAEVGKGENDLYEVRLISNTDPNASP 246

[Close]
BLAST of CmaCh15G001920 vs. NCBI nr
Match: XP_008459460.1 (PREDICTED: thylakoid membrane protein slr0575 [Cucumis melo])

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-04
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G GITAEVGKGEN LYEVRLISN+ PGASP
Sbjct: 265 GPGITAEVGKGENDLYEVRLISNSIPGASP 294

[Close]
BLAST of CmaCh15G001920 vs. NCBI nr
Match: KAA0039379.1 (thylakoid membrane protein [Cucumis melo var. makuwa] >TYK00567.1 thylakoid membrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-04
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G GITAEVGKGEN LYEVRLISN+ PGASP
Sbjct: 265 GPGITAEVGKGENDLYEVRLISNSIPGASP 294

[Close]
BLAST of CmaCh15G001920 vs. NCBI nr
Match: XP_022134099.1 (uncharacterized protein LOC111006453 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 8.0e-04
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 38  GAGITAEVGKGENALYEVRLISNTNPGASP 68
           G GITAEVGKGEN LYEVRLISNT P ASP
Sbjct: 258 GPGITAEVGKGENELYEVRLISNTIPSASP 287

The following BLAST results are available for this feature:
BLAST of CmaCh15G001920 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G001920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1J7HI572.3e-0483.33Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_32432 PE=4 S... [more]
A0A5A7TDN53.0e-0486.67Thylakoid membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A1S3CAR13.0e-0486.67thylakoid membrane protein slr0575 OS=Cucumis melo OX=3656 GN=LOC103498589 PE=4 ... [more]
A0A0A0KVX13.9e-0486.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G644000 PE=4 SV=1[more]
A0A6J1BXU73.9e-0486.67uncharacterized protein LOC111006453 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
BLAST of CmaCh15G001920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_019442794.14.7e-0483.33PREDICTED: uncharacterized protein LOC109347411 isoform X1 [Lupinus angustifoliu... [more]
XP_019442796.14.7e-0483.33PREDICTED: uncharacterized protein LOC109347411 isoform X2 [Lupinus angustifoliu... [more]
XP_008459460.16.1e-0486.67PREDICTED: thylakoid membrane protein slr0575 [Cucumis melo][more]
KAA0039379.16.1e-0486.67thylakoid membrane protein [Cucumis melo var. makuwa] >TYK00567.1 thylakoid memb... [more]
XP_022134099.18.0e-0486.67uncharacterized protein LOC111006453 [Momordica charantia][more]
BLAST of CmaCh15G001920 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G001920.1CmaCh15G001920.1mRNA