CmaCh15G001490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G001490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr15: 696887 .. 697213 (+)
RNA-Seq Expression	CmaCh15G001490
Synteny	CmaCh15G001490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGCAATGGTACAACGGCGAGGCAGAGGACGACGGTGAGTCGGTTGGATCTCCGAGACGAGTAACGGTGAGAGAGGAATTGAAATATTCGCGGACCTGTGTGATTATCCCATCTGTGACGGTCCAAGCGTGGATCCAGGAGATGGAACGGCTAGGGTCGCAGCCTTCGACGAGGACGGTGGGGCCGAAGGATGTGATTGATTGAGGAACGAACTGAAAGGATTGGCCGTCGGATGAGGCTCCAGTGAGAAGGCGCATCAGAAATTGGTGCGATGGCGGACCGTGGAACCACCACTCGAGATCAGGGGCGAGGATTTGGTGA

mRNA sequence

ATGGAAGGGCAATGGTACAACGGCGAGGCAGAGGACGACGGTGAGTCGGTTGGATCTCCGAGACGAGTAACGGTGAGAGAGGAATTGAAATATTCGCGGACCTGTGTGATTATCCCATCTGTGACGGTCCAAGCGTGGATCCAGGAGATGGAACGGCTAGGGTCGCAGCCTTCGACGAGGACGGTGGGGCCGAAGGATGATTGGCCGTCGGATGAGGCTCCAGTGAGAAGGCGCATCAGAAATTGGTGCGATGGCGGACCGTGGAACCACCACTCGAGATCAGGGGCGAGGATTTGGTGA

Coding sequence (CDS)

ATGGAAGGGCAATGGTACAACGGCGAGGCAGAGGACGACGGTGAGTCGGTTGGATCTCCGAGACGAGTAACGGTGAGAGAGGAATTGAAATATTCGCGGACCTGTGTGATTATCCCATCTGTGACGGTCCAAGCGTGGATCCAGGAGATGGAACGGCTAGGGTCGCAGCCTTCGACGAGGACGGTGGGGCCGAAGGATGATTGGCCGTCGGATGAGGCTCCAGTGAGAAGGCGCATCAGAAATTGGTGCGATGGCGGACCGTGGAACCACCACTCGAGATCAGGGGCGAGGATTTGGTGA

Protein sequence

MEGQWYNGEAEDDGESVGSPRRVTVREELKYSRTCVIIPSVTVQAWIQEMERLGSQPSTRTVGPKDDWPSDEAPVRRRIRNWCDGGPWNHHSRSGARIW

Homology

[Close]

BLAST of CmaCh15G001490 vs. ExPASy TrEMBL
Match: A0A7J6HRB7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_023049 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 55 SQPSTRTVGPKD--DW--------PSDEAPVRRRIRNWCDGGPWNHHSRSGAR 98
          SQPSTRTVGP +  DW          DE PV  RI+NWCDGGPWNH SRSG R
Sbjct: 27 SQPSTRTVGPNEAKDWGWNWKTTSSGDETPVSNRIKNWCDGGPWNHQSRSGER 79

[Close]

BLAST of CmaCh15G001490 vs. ExPASy TrEMBL
Match: A0A061ERM9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021566 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-04
Identity = 36/81 (44.44%), Postives = 38/81 (46.91%), Query Frame = 0


Query: 24  TVREELKYSRTCVIIPSVTVQAWIQEMERLGSQPSTRTVGPKDD----------WPSDEA 83
           TV   LKYS  CVI PS  V  W Q      SQPS  T  P             W   ++
Sbjct: 38  TVSHVLKYSLNCVIRPSFKVHTWTQ-YTCAPSQPSAITQSPTTSMLLGSNLNSVWL--DS 97

Query: 84  PVRRRIRNWCDGGPWNHHSRS 95
           PV  RI  W  GGPWNHHSRS
Sbjct: 98  PVSTRIICWHRGGPWNHHSRS 115

[Close]

BLAST of CmaCh15G001490 vs. NCBI nr
Match: CAE5966834.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 53/108 (49.07%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 2   EGQWYNGEAEDDGESVGSPRRVTVREELKYSRTCVIIPSVTVQAWIQEMERLGSQPSTRT 61
           EGQ     + +   +   P RVTVRE L+YS TCVIIP  TVQAWIQE+E   SQPS  T
Sbjct: 200 EGQCDGAISAERRPATTLPIRVTVREVLEYSLTCVIIPFATVQAWIQEIEVAASQPSAIT 259

Query: 62  VGP----------KDDWPSDEAPVRRRIRNWCDGGPWNHHSRSGARIW 100
           V P           ++   +  PV  RI+NWC GGPWN +SRSG +IW
Sbjct: 260 VDPNETTERGTNSNEEEDGETPPVSTRIKNWCGGGPWNQYSRSGVKIW 307

[Close]

BLAST of CmaCh15G001490 vs. NCBI nr
Match: KAF4369185.1 (hypothetical protein F8388_023049 [Cannabis sativa] >KAF4397806.1 hypothetical protein G4B88_017287 [Cannabis sativa])

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 33/53 (62.26%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 55 SQPSTRTVGPKD--DW--------PSDEAPVRRRIRNWCDGGPWNHHSRSGAR 98
          SQPSTRTVGP +  DW          DE PV  RI+NWCDGGPWNH SRSG R
Sbjct: 27 SQPSTRTVGPNEAKDWGWNWKTTSSGDETPVSNRIKNWCDGGPWNHQSRSGER 79

[Close]

BLAST of CmaCh15G001490 vs. NCBI nr
Match: EOY07032.1 (Uncharacterized protein TCM_021566 [Theobroma cacao])

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-04
Identity = 36/81 (44.44%), Postives = 38/81 (46.91%), Query Frame = 0


Query: 24  TVREELKYSRTCVIIPSVTVQAWIQEMERLGSQPSTRTVGPKDD----------WPSDEA 83
           TV   LKYS  CVI PS  V  W Q      SQPS  T  P             W   ++
Sbjct: 38  TVSHVLKYSLNCVIRPSFKVHTWTQ-YTCAPSQPSAITQSPTTSMLLGSNLNSVWL--DS 97

Query: 84  PVRRRIRNWCDGGPWNHHSRS 95
           PV  RI  W  GGPWNHHSRS
Sbjct: 98  PVSTRIICWHRGGPWNHHSRS 115

The following BLAST results are available for this feature:

BLAST of CmaCh15G001490 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh15G001490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6HRB7	1.3e-08	62.26	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_023049 PE=4 SV=1	[more]
A0A061ERM9	2.6e-04	44.44	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_021566 PE=4 SV=1	[more]

BLAST of CmaCh15G001490 vs. NCBI nr


Match Name	E-value	Identity	Description
CAE5966834.1	1.1e-17	49.07	unnamed protein product [Arabidopsis arenosa]	[more]
KAF4369185.1	2.7e-08	62.26	hypothetical protein F8388_023049 [Cannabis sativa] >KAF4397806.1 hypothetical p...	[more]
EOY07032.1	5.3e-04	44.44	Uncharacterized protein TCM_021566 [Theobroma cacao]	[more]

BLAST of CmaCh15G001490 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G001490.1	CmaCh15G001490.1	mRNA