CmaCh15G001380 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G001380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 663699 .. 664760 (+)
RNA-Seq ExpressionCmaCh15G001380
SyntenyCmaCh15G001380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCCCCTTTTTGCATTGCAGTTCAAGCTTTGTTGTTTCCTTCTTCTGTCAACAAAGACCACCGAGTTTCTTTCTGAACAAGCCGCTAAGGTAAGGCTCTCTCTCTCTCTCTCTTTGGGAGTCCTACTCAGGCGAAGATGCTTTAGTTGGTAAAGTTGTTTGAGGGTTTCTTCTTTCCCTCTTTCTAATCTTTTACACGACTGTAACTGTTAACAGGCACAACCACAAAGCTACATGAAAAGTTGCCTACAAAAAGATGCACAAGTTACTTGGAAACATGGAGGACCTGTTGGTATGGAGTGTAAAGTGCTGGGCTCCATTTTCAGCCTCCATAATGGAAATATTCAGTATTATATCCTGAAACTCTCAGTCTCGGTTGTTTTTCTATTTTTATGTCTCGAGATATTCTTTTCATAATAAATCTGTATGACCTTATCTTGGAAGGGGAAGAGAAAAAAAGATCCTATGTTTAAAACCACAGTACTGTGAATTTTAGAGTACTAAAGTGATAGTGTATAGATAGGATTGTAAGGGAAAGGAGGTTTTTTGACGCAAACCCATAAAAGAACTTGCCATAAGTCCAAATGGGTCGGAGTTGATTCTGTATGGAGATGGAAATTTTCTGTGATAGTTCATCCCAAAATCAAAGATCCTTTGGATCTGCCTATGTTTCCAGGGCAATATGGGATTGGGATCTCGTTAGATCCAACAATTAGTCGAGTTCCTTGGTGTGCTCTGTTTATGGCTATGTTTCATTTTTTTTTTTTCTTTGCTGAAAATAATGATTTAAATTTAGTGGGAATGGTTTTACATAAGGACAATCTTTAATTGATCAGATCGTGGAGGCTTAGCTTTATCAGAGGGAAAACCGGAAACTTCAAACTGAAACGACAGCCATACACAGCCAAAAATGATTTTCGGTTTGACGAATTAAAGGCTATTGGACATCACACCAATCACCATCAAGATATAAAGATCACACACATTATTTTTATTATTGTTGTTATTAGTGCAATCAACAGTAGCTCTCCAGATGCAACCATAAAAACTAAACTTTGA

mRNA sequence

ATGGCCCCCCTTTTTGCATTGCAGTTCAAGCTTTGTTGTTTCCTTCTTCTGTCAACAAAGACCACCGAGTTTCTTTCTGAACAAGCCGCTAAGGCACAACCACAAAGCTACATGAAAAGTTGCCTACAAAAAGATGCACAAGTTACTTGGAAACATGGAGGACCTGTTGGTATGGAGTGTAAAGTGCTGGGCTCCATTTTCAGCCTCCATAATGGAAATATTCAATCGTGGAGGCTTAGCTTTATCAGAGGGAAAACCGGAAACTTCAAACTGAAACGACAGCCATACACAGCCAAAAATGATTTTCGGTTTGACGAATTAAAGGCTATTGGACATCACACCAATCACCATCAAGATATAAAGATCACACACATTATTTTTATTATTGTTGTTATTAGTGCAATCAACAGTAGCTCTCCAGATGCAACCATAAAAACTAAACTTTGA

Coding sequence (CDS)

ATGGCCCCCCTTTTTGCATTGCAGTTCAAGCTTTGTTGTTTCCTTCTTCTGTCAACAAAGACCACCGAGTTTCTTTCTGAACAAGCCGCTAAGGCACAACCACAAAGCTACATGAAAAGTTGCCTACAAAAAGATGCACAAGTTACTTGGAAACATGGAGGACCTGTTGGTATGGAGTGTAAAGTGCTGGGCTCCATTTTCAGCCTCCATAATGGAAATATTCAATCGTGGAGGCTTAGCTTTATCAGAGGGAAAACCGGAAACTTCAAACTGAAACGACAGCCATACACAGCCAAAAATGATTTTCGGTTTGACGAATTAAAGGCTATTGGACATCACACCAATCACCATCAAGATATAAAGATCACACACATTATTTTTATTATTGTTGTTATTAGTGCAATCAACAGTAGCTCTCCAGATGCAACCATAAAAACTAAACTTTGA

Protein sequence

MAPLFALQFKLCCFLLLSTKTTEFLSEQAAKAQPQSYMKSCLQKDAQVTWKHGGPVGMECKVLGSIFSLHNGNIQSWRLSFIRGKTGNFKLKRQPYTAKNDFRFDELKAIGHHTNHHQDIKITHIIFIIVVISAINSSSPDATIKTKL
Homology
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BLAST of CmaCh15G001380 vs. NCBI nr
Match: XP_023549824.1 (transcription factor bHLH51-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-42
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 58  MECKVLGSIFSLHNGNIQSWRLSFIRGKTGNFKLKRQPYTAKNDFRFDELKAIGHHTNHH 117
           MECKVLGSIFSLHNGNIQSWRLSFIRGK GNFKLKRQPYTAKNDFRFDELKAIGHHTNHH
Sbjct: 1   MECKVLGSIFSLHNGNIQSWRLSFIRGKNGNFKLKRQPYTAKNDFRFDELKAIGHHTNHH 60

Query: 118 QDIKITHIIFIIVVISAINSSSPDATIKTKL 149
           QDIKITHII IIVVISAINSSSPDATIKTKL
Sbjct: 61  QDIKITHIIIIIVVISAINSSSPDATIKTKL 91

The following BLAST results are available for this feature:
BLAST of CmaCh15G001380 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G001380 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G001380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023549824.12.5e-4297.80transcription factor bHLH51-like [Cucurbita pepo subsp. pepo][more]
BLAST of CmaCh15G001380 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G001380.1CmaCh15G001380.1mRNA