CmaCh15G000260 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G000260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 166666 .. 166899 (+)
RNA-Seq ExpressionCmaCh15G000260
SyntenyCmaCh15G000260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAACCTTCTTTGTATGCATCACTAAGGCGTTACTGTGCTCCGTTGATGGTCGGTTTCTTTTTTCAGTTGCTTCGCTTTGTAATGTATTGAATACAGTTCTCTGGATGAAAGTTTTGCAACAAATCTTAAGCTGGGCTGGCTCCTACTACAGCATGAAACTGATGCAAGCTTATTATTCACATCACTGCATGGTTGTATTGTATGTGTACCCTACCCTGCCTTACCGGTAG

mRNA sequence

ATGTTAACCTTCTTTGTATGCATCACTAAGGCGTTACTGTGCTCCGTTGATGGTCGGTTTCTTTTTTCAGTTGCTTCGCTTTGTAATGTATTGAATACAGTTCTCTGGATGAAAGTTTTGCAACAAATCTTAAGCTGGGCTGGCTCCTACTACAGCATGAAACTGATGCAAGCTTATTATTCACATCACTGCATGGTTGTATTGTATGTGTACCCTACCCTGCCTTACCGGTAG

Coding sequence (CDS)

ATGTTAACCTTCTTTGTATGCATCACTAAGGCGTTACTGTGCTCCGTTGATGGTCGGTTTCTTTTTTCAGTTGCTTCGCTTTGTAATGTATTGAATACAGTTCTCTGGATGAAAGTTTTGCAACAAATCTTAAGCTGGGCTGGCTCCTACTACAGCATGAAACTGATGCAAGCTTATTATTCACATCACTGCATGGTTGTATTGTATGTGTACCCTACCCTGCCTTACCGGTAG

Protein sequence

MLTFFVCITKALLCSVDGRFLFSVASLCNVLNTVLWMKVLQQILSWAGSYYSMKLMQAYYSHHCMVVLYVYPTLPYR
Homology
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BLAST of CmaCh15G000260 vs. NCBI nr
Match: KAG6578322.1 (hypothetical protein SDJN03_22770, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 0 

Query: 1  MLTFFVCITKALLCSVDGRFLFSVASLCNVLNTVLWMKVLQ-QILSWAGSYYSMKLMQAY 60
          M+TFFVCIT ALLCSVDGRFLFSVASLCN +NTVLWMK L   + SWAGSYYSMKLMQAY
Sbjct: 1  MVTFFVCITMALLCSVDGRFLFSVASLCNDMNTVLWMKNLSTNLKSWAGSYYSMKLMQAY 60

Query: 61 YSHHCMVVLY 70
          YS HC+VV +
Sbjct: 61 YSRHCIVVFF 70

The following BLAST results are available for this feature:
BLAST of CmaCh15G000260 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G000260 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578322.11.8e-2080.00hypothetical protein SDJN03_22770, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh15G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G000260.1CmaCh15G000260.1mRNA