CmaCh14G019940 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G019940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 14008641 .. 14010197 (-)
RNA-Seq ExpressionCmaCh14G019940
SyntenyCmaCh14G019940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGCTCTTGGTCATTTACTTCTCAAATGAAGAGTGGACAAAACTGGAAAGCTCAATCTCAAGCCCAGTGCCTAAGGCCTCACAATTTCAACAAATAGTGACATACATACAACTTGATCCCATAAAGAATGGCCCCGCATGTAACATTCTAGTATCTAGAAGCTAATGTATATTCATAAGATTTGGGGCTAGTCTATCACATATTTTACAACGTGTAACCAACAAAGGGCCAGATTTTGGACAGCAAGTGTGAGGACTGGAGTTACATCTCAGTAGCAACGATGACGACGACCTGATAGCTCTATATAAGCATGAAATTAAAGAGGCAAACCTATTGAGCATAGGGCCTCGGCTTAGATCTCCTTCCACTCCGTGCTTGAGAGAAAAAAATAAGAGCAACAAGATATATCCATCGACGTTTCAGTGCTAGCAAATATATATGATGCAGAATTTGTCCAACAGCTATACAAGTATTGAACTCTTTTGTTGCCGCAGAAGGCTATGATTTTATAAGAGGGCTGAGCCCCTCACCTTCCCAGCCAATCTTCAGCATTTGATCTACGACTTTCAAGCTCAACTGAACAGAACAATGATAAGAAGTGTCAAAACAAGTGGGATTTTAAAAGATAATAATCTACATATTCAGCTACTTGACTTGTTTTCATAAACTTAGACAGGTAGGTTAATCTGTTTGATAATGATATTGTTTTTAGTTTTCTGCTTCTGTCAATTGTACTCGTTGTCTCATAATTTCTTTACTACAATGTTCACTTCACATGGTCCCGAGAAATTGTATTAAAAGATAGGGAAAAAATCAGGTAGAATTATTAAATAGCCATGGAAATATGGAAGGTTCTTACAGCGGGATCAGTGAAGACTATTAACTGCATATCTGCAGTCGACACCAAAAGATTTGTGTTGTCTTTATTTAATGCCAGCGCAGTGATATCCTGCCCTTCTTTGAGTCGCAGCGTATGGAAAACCTGTAGGATAAAGAAACATAACGAGGATGGAGATAATGAGCTTATCGTATTATGTATTCAATTTAATAAGGAAAGAAATTAGGTAAAGCTACTTAGTTCAATTTAATAATACCTTCAAAGTATGCAGATTCAAAAAGCAAACAGAAGGAACCGGAACATCTAATCTCTCATCTTCTGAAGTTTCATCAGGTGTGAAGAAATCATTGGACTTAAACTCCCAGCTATTAGTGGGGGTTCTATTGTTTTGGGCTGATGAATTTATTCCAATCAAGGCACTCTCCCCATCAACAGATATTTCCATACAACTGATGCTGGAAGAGTACGGAAATGGTGCTCTAGCAATTAGATTTCCATTCAGAGTAAAGGTTGAAAGAGTACATTGTGATTCGTTCCAAGTCAATATAACTCCCTCGGAAGAAAGGCTTACAGCATGGGCCTCTATACCAGCCAACCTTCTGATCAACCGACCTCTTCTGATGGAATGTATCAAAACATCCGATGACTGGGAGCATGAAACAACAATACCAAGATCTGAGTTCACACAGCAGCACACAACTTCACGGTGGTGA

mRNA sequence

ATGGAAGAGCTCTTGGTCATTTACTTCTCAAATGAAGAGTGGACAAAACTGGAAAGCTCAATCTCAAGCCCAGTGCCTAAGGCCTCACAATTTCAACAAATAGTGACATACATACAACTTGATCCCATAAAGAATGGCCCCGCATGTAACATTCTACGCAGTGATATCCTGCCCTTCTTTGAGTCGCAGCGTATGGAAAACCTATTCAAAAAGCAAACAGAAGGAACCGGAACATCTAATCTCTCATCTTCTGAAGTTTCATCAGGTGTGAAGAAATCATTGGACTTAAACTCCCAGCTATTAGTGGGGGTTCTATTGTTTTGGGCTGATGAATTTATTCCAATCAAGGCACTCTCCCCATCAACAGATATTTCCATACAACTGATGCTGGAAGAGTACGGAAATGGTGCTCTAGCAATTAGATTTCCATTCAGAGTAAAGGTTGAAAGAGTACATTGTGATTCGTTCCAAGTCAATATAACTCCCTCGGAAGAAAGGCTTACAGCATGGGCCTCTATACCAGCCAACCTTCTGATCAACCGACCTCTTCTGATGGAATGTATCAAAACATCCGATGACTGGGAGCATGAAACAACAATACCAAGATCTGAGTTCACACAGCAGCACACAACTTCACGGTGGTGA

Coding sequence (CDS)

ATGGAAGAGCTCTTGGTCATTTACTTCTCAAATGAAGAGTGGACAAAACTGGAAAGCTCAATCTCAAGCCCAGTGCCTAAGGCCTCACAATTTCAACAAATAGTGACATACATACAACTTGATCCCATAAAGAATGGCCCCGCATGTAACATTCTACGCAGTGATATCCTGCCCTTCTTTGAGTCGCAGCGTATGGAAAACCTATTCAAAAAGCAAACAGAAGGAACCGGAACATCTAATCTCTCATCTTCTGAAGTTTCATCAGGTGTGAAGAAATCATTGGACTTAAACTCCCAGCTATTAGTGGGGGTTCTATTGTTTTGGGCTGATGAATTTATTCCAATCAAGGCACTCTCCCCATCAACAGATATTTCCATACAACTGATGCTGGAAGAGTACGGAAATGGTGCTCTAGCAATTAGATTTCCATTCAGAGTAAAGGTTGAAAGAGTACATTGTGATTCGTTCCAAGTCAATATAACTCCCTCGGAAGAAAGGCTTACAGCATGGGCCTCTATACCAGCCAACCTTCTGATCAACCGACCTCTTCTGATGGAATGTATCAAAACATCCGATGACTGGGAGCATGAAACAACAATACCAAGATCTGAGTTCACACAGCAGCACACAACTTCACGGTGGTGA

Protein sequence

MEELLVIYFSNEEWTKLESSISSPVPKASQFQQIVTYIQLDPIKNGPACNILRSDILPFFESQRMENLFKKQTEGTGTSNLSSSEVSSGVKKSLDLNSQLLVGVLLFWADEFIPIKALSPSTDISIQLMLEEYGNGALAIRFPFRVKVERVHCDSFQVNITPSEERLTAWASIPANLLINRPLLMECIKTSDDWEHETTIPRSEFTQQHTTSRW
Homology
[Close]
BLAST of CmaCh14G019940 vs. ExPASy TrEMBL
Match: A0A2P5BXB3 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_305530 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0 

Query: 138 LAIRFPFRVKVERVHCDSFQVNITPSEERLTAWASIPANLLINRPLLMECIKTSDDWEHE 197
           +AIR P R+KV R+ CD FQV ITPSEER TA A  P +LLINRPLL+EC KTSD+WEHE
Sbjct: 2   VAIRAPLRLKVLRLCCDLFQVIITPSEERHTALALTPGSLLINRPLLIECNKTSDEWEHE 61

Query: 198 TTIPRSEFTQQHTTS-RW 215
           TTIPRSE TQQ   S RW
Sbjct: 62  TTIPRSELTQQERISLRW 79

[Close]
BLAST of CmaCh14G019940 vs. ExPASy TrEMBL
Match: A0A2P5AFB9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_337950 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-18
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 138 LAIRFPFRVKVERVHCDSFQVNITPSEERLTAWASIPANLLINRPLLMECIKTSDDWEHE 197
           +AIR P R+KV R+ CD FQV ITPSEER TA A  P +LLINRPLL+EC K SD+WEHE
Sbjct: 2   VAIRAPLRLKVLRLCCDLFQVIITPSEERQTALALTPGSLLINRPLLIECNKISDEWEHE 61

Query: 198 TTIPRSEFTQQHTTS 213
           TTIPRSE  QQ   S
Sbjct: 62  TTIPRSELKQQERIS 76

[Close]
BLAST of CmaCh14G019940 vs. NCBI nr
Match: PON53437.1 (hypothetical protein TorRG33x02_305530, partial [Trema orientale])

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-19
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0 

Query: 138 LAIRFPFRVKVERVHCDSFQVNITPSEERLTAWASIPANLLINRPLLMECIKTSDDWEHE 197
           +AIR P R+KV R+ CD FQV ITPSEER TA A  P +LLINRPLL+EC KTSD+WEHE
Sbjct: 2   VAIRAPLRLKVLRLCCDLFQVIITPSEERHTALALTPGSLLINRPLLIECNKTSDEWEHE 61

Query: 198 TTIPRSEFTQQHTTS-RW 215
           TTIPRSE TQQ   S RW
Sbjct: 62  TTIPRSELTQQERISLRW 79

[Close]
BLAST of CmaCh14G019940 vs. NCBI nr
Match: PON35235.1 (hypothetical protein PanWU01x14_337950 [Parasponia andersonii])

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-17
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 0 

Query: 138 LAIRFPFRVKVERVHCDSFQVNITPSEERLTAWASIPANLLINRPLLMECIKTSDDWEHE 197
           +AIR P R+KV R+ CD FQV ITPSEER TA A  P +LLINRPLL+EC K SD+WEHE
Sbjct: 2   VAIRAPLRLKVLRLCCDLFQVIITPSEERQTALALTPGSLLINRPLLIECNKISDEWEHE 61

Query: 198 TTIPRSEFTQQHTTS 213
           TTIPRSE  QQ   S
Sbjct: 62  TTIPRSELKQQERIS 76

The following BLAST results are available for this feature:
BLAST of CmaCh14G019940 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G019940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BXB31.6e-1970.51Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_305... [more]
A0A2P5AFB96.8e-1868.00Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_337950 PE... [more]
BLAST of CmaCh14G019940 vs. NCBI nr
Match NameE-valueIdentityDescription
PON53437.13.3e-1970.51hypothetical protein TorRG33x02_305530, partial [Trema orientale][more]
PON35235.11.4e-1768.00hypothetical protein PanWU01x14_337950 [Parasponia andersonii][more]
BLAST of CmaCh14G019940 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G019940.1CmaCh14G019940.1mRNA