CmaCh14G019650 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G019650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	upstream activation factor subunit spp27-like
Location	Cma_Chr14: 13826373 .. 13829374 (-)
RNA-Seq Expression	CmaCh14G019650
Synteny	CmaCh14G019650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTCTGTCCAAATGTTACGTACTTTGGAGCGGATTGTCCCTTCGTTTCCCGCGAGTCTCTCTGATTCTTCTCCTCACTGAACCCTCCGCCGAAATCCGACTGCAACATCCGAGCGAGCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGATGCAGAGCTCTCTTAGCTCCGTCGAAATCTTCTGCTACCGTCCCCCCCGCCGCTGTCAAATCGAGGACGACCTCGAAGTCGAACACTGAGCCGAAGGAGAAGACTCCTCCGAGGTCCGATGTTGCTGCTGCAGCCGCACCGAAGCCGAAAGTCAAAAGGGAAATGACTCGATCGACAGGGTTTCTGAAAGTCTTACAGGTTTCTCCAGCGTTGGGCAATTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTATATCAAGCTCCATAACCTTCAGGTTTCTATCTTATTTCCAGTGCTATCTCTGATTTGATCGCGTAGATTGTCGAGTAGGCGAGAACCGTTGTGGTTTCTAGGGAAATGGTGTTGTCCGCGATATTTGATGAATCCTTTGGTCGATCTATTAATTCTGAAGTCCATAAGAAGAGAAATCTGATTTCAAGTAACGAAACTAGTCTCCGCTGCTTCCTTTTTACTTCTCCCCATGCTGCAAGTAAATTTAGGAACTCGTTTACCTTGATGAAAAATGGGTGTCTGGCTTGTCTCCGTTTAAGAGTTTGTAGCAATTTCTTTGAGTTTAGGAAGATTATAACTCACGAACTAGCAATTTTTAGGGGTATTAGAAAAATTGTAACAGTCGAAGGGACAAGGGACGTGAAATCTCACAATCCACCCCTTGTGTCCAGTGCTTGGTGCTGACACCACACACCCTTAAGAAATCAAGGGATGTGAGATCTTACGATCCACCTCCCTTGGGAGCGAGCTTCCTCGCTGGCACACCGCTCGGTGCTTGTCTCTGATACCATACACCCTTAAGAAATCAAGGGATGTGAGATCTCATAATCCACCTCTCTTGAGAGCGAGCATCCTCGTTGACACACCGCCCGATGCTTGGCTCTAATACCACACACCCTTAAGAAATCAAGGGATGTGAGATCTCACAATCTACCTCTTTTGAGAGCAAGCGTCCTCGCTGGCACACCACCCGATGCTTGGCTCTGATACCACACACCCTTAAGAAATCAAGGGATGTGAGATCTCACAACCCACCTCCCTCGGGAGCCAGCGTCCTCGCTGGCTGGCACACTGCCTAGTGCTTGGTTTTGGTACCACTTGTAACAGCTCAAGTCTACCACCACTAGCGGAGATATTATCCTCTGTGGGTGTTTACTTATCTTCCCCTTAAGGTTTTAAAACGAGTCTGTTAGCTAGAGGTTTCCACATGTTAATGTTTTGTTGCTCTATCTAACCTACCTGTTATCTCACAAAAATAGGAGCACGAATAGGCTAAAATAGAACCTATGAAGCTGTTCTGAATGAAATCTTCTGTTATTCTCTCCTACTCTTTGGGGTTAATAATCAAAATCCACGAGATCTCTTGAAGCTTTAGAATTGAGAATATTTCGGTGTTTAGACTTGGAATAACTACATGATAGACTGTTGACAGTATTACATGAAGCCTTTATACGTCTATGTAAATTCTTATGGAGCTATCAACAAATTCCTGAAAAATGAAGCCCCCCCATGGCCATGGTCATAGATAGCTGATTAATCCAAAGCTTCCAAACCTTGACAATCCCCTCTTTTTCTACGAGAATACTTGGCTCTTAAAAGGTTGAAACACTTGATAAAGGGATTATATAGTATTACTTTATAAATTGTTGAAATTGATATTTACTTTCAGAAATATCTGGTATTGATCTCTATGATGTGTTCGTGGGCACGACAGTTAAGCCCGGGTTAACTTAAGCTCGAAGATGCTATTCTTTAGGATTGGAGTCCTTTCATGTAGCTAGTTATGAATGCTTTTTGTATGCCTTTTTACATTCTGTGAGATCTCACATAAGCGGAACAAAGCATTCCTTATAAGGGTGTTGAAACCTCCCTCTAGTAGACAGCGATATGTAACGACCTATAATTGACAATATCTGCTAGTGTTGGGCTTGGGCTGTTATAGTATCAAAACCAGACAATCGGCAGTGTGCCAAAGAGGACGCTGGCTCCAAGGGAGGTGGATTGTGGGATCCCACATCAGTTGGAGAGGGAAACAAAACATTCCTTATAACGGTGCAGACACCTCTTTCTAGTAGACGCATTATAAAAGCATAACCGTGATGATATTATATATTGTACAAGTTTCTTCCATTTGAAATATTGTAGGTTAGGGTTGTCTGTATTGCATTTTTAGTTGATGATTAGGGGGTTTCTGTGAGCCAAGCTATATGGCATAATGAGATATTTCACTGTCTTTGCCTGCAGAATCCTGCCAACAAAAGAGAGATATACTGTGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTTGGTTTCTTGGAGATTGGCAAATTGCTCACTCGCCATTTTGTGAAGAACTGATCGGCAAATTCCCAAGCCTTCTGGTTGTTGGGCTCTTCTTTGGCTCCCGTGTTTTTAGGCAAACTTGCTCAACTTCTCGTAGATGGGGCATTTTTAGGCTTACTTCAGTGTGTTGTCTGGTAAGTTTTCTTGTAAAAATGATAGCACCTAAATTAATGGCTTCCATCTTCTTCACCCTCCATGGCCATTGGTTCATAGAAGGCAGGGGTGGTTCCACTCGTTACTAGATTTAGTGATTTCGGTAGTTGTAGATATTTTATCTAATTGACTTGCCTTTTGGGACCGGCTACTAGACCGTTTGATTAATTTTTCGCCCCTATATCTAAGTCAGACGAATGATTTGCATGTCAGTATTGTTGTGGCCTCCACTAGAGTTTCCTCTAGCTTTTTCCCGCTCACGTATAATTCATCATTTTTTTTTAGTGACAATGTCA

mRNA sequence

AAAGTCTGTCCAAATGTTACGTACTTTGGAGCGGATTGTCCCTTCGTTTCCCGCGAGTCTCTCTGATTCTTCTCCTCACTGAACCCTCCGCCGAAATCCGACTGCAACATCCGAGCGAGCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGATGCAGAGCTCTCTTAGCTCCGTCGAAATCTTCTGCTACCGTCCCCCCCGCCGCTGTCAAATCGAGGACGACCTCGAAGTCGAACACTGAGCCGAAGGAGAAGACTCCTCCGAGGTCCGATGTTGCTGCTGCAGCCGCACCGAAGCCGAAAGTCAAAAGGGAAATGACTCGATCGACAGGGTTTCTGAAAGTCTTACAGGTTTCTCCAGCGTTGGGCAATTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTATATCAAGCTCCATAACCTTCAGAATCCTGCCAACAAAAGAGAGATATACTGTGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTTGGTTTCTTGGAGATTGGCAAATTGCTCACTCGCCATTTTGTGAAGAACTGATCGGCAAATTCCCAAGCCTTCTGGTTGTTGGGCTCTTCTTTGGCTCCCGTGTTTTTAGGCAAACTTGCTCAACTTCTCGTAGATGGGGCATTTTTAGGCTTACTTCAGTGTGTTGTCTGGTAAGTTTTCTTGTAAAAATGATAGCACCTAAATTAATGGCTTCCATCTTCTTCACCCTCCATGGCCATTGGTTCATAGAAGGCAGGGGTGGTTCCACTCGTTACTAGATTTAGTGATTTCGGTAGTTGTAGATATTTTATCTAATTGACTTGCCTTTTGGGACCGGCTACTAGACCGTTTGATTAATTTTTCGCCCCTATATCTAAGTCAGACGAATGATTTGCATGTCAGTATTGTTGTGGCCTCCACTAGAGTTTCCTCTAGCTTTTTCCCGCTCACGTATAATTCATCATTTTTTTTTAGTGACAATGTCA

Coding sequence (CDS)

ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGATGCAGAGCTCTCTTAGCTCCGTCGAAATCTTCTGCTACCGTCCCCCCCGCCGCTGTCAAATCGAGGACGACCTCGAAGTCGAACACTGAGCCGAAGGAGAAGACTCCTCCGAGGTCCGATGTTGCTGCTGCAGCCGCACCGAAGCCGAAAGTCAAAAGGGAAATGACTCGATCGACAGGGTTTCTGAAAGTCTTACAGGTTTCTCCAGCGTTGGGCAATTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTATATCAAGCTCCATAACCTTCAGAATCCTGCCAACAAAAGAGAGATATACTGTGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTTGGTTTCTTGGAGATTGGCAAATTGCTCACTCGCCATTTTGTGAAGAACTGA

Protein sequence

MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

Homology

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BLAST of CmaCh14G019650 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 40  KSNTEPKEKTPPRSDVAAAAAPKPKVKREM--TRSTGFLKVLQVSPALGNFLGVSEASRT 99
           K    P   T  R   + + + + K K +   + S    KVL  +P L  FLG  E  RT
Sbjct: 84  KEEERPLRSTRKRKGKSESKSKRKKKKNDSPDSNSISVRKVLLSAP-LQKFLGSEELPRT 143

Query: 100 DAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLTRH 150
             VK IW YIK H+LQNP ++REI CD+K++ IF   +K+    + KLLT+H
Sbjct: 144 QVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF--GKKMTMFSMNKLLTKH 192

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BLAST of CmaCh14G019650 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-11
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 23  KSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAAPKPKVKREMTRSTGFLKVLQVS 82
           K +AT+     K  T SK ++  +     ++D         K K  +++S    + + +S
Sbjct: 73  KENATLAIELTKEITVSKRSSGEE-----KNDSETKGTHVEKKKGTVSKSPISTRKVTLS 132

Query: 83  PALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEI 142
            +L + LG  E +RT+ V+++W+YIK HNLQNP NK+EI CD+KL+ I    +     E+
Sbjct: 133 KSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL--GKSTNMFEM 192

Query: 143 GKLLTRHFVK 153
            K+L  H  +
Sbjct: 193 HKILASHMTE 195

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BLAST of CmaCh14G019650 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-10
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 20  APSKSSA---TVPPAAVKSRTTSKSNTE----PKEKTPPRSDVAAAAAPKPKVKREMTRS 79
           APS+  +     P    K +  +++ TE    P ++T  R +         K KR    +
Sbjct: 57  APSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGG---KRKRNQDPA 116

Query: 80  TGFL-KVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIF 133
              L K +++SP L  FLG+ + SR   VK++W YIK H+LQ+P +KR I CDDKLK++F
Sbjct: 117 NNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 174

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BLAST of CmaCh14G019650 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-08
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 80  QVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGF 139
           ++S A  N LG+ E +R D V  +W YIK H LQ+   KR I CD  L+ +FE  +++ F
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYF 266

Query: 140 LEIGKLLTR 149
             I +L+ R
Sbjct: 267 PRIPELMNR 274

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BLAST of CmaCh14G019650 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-05
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 80  QVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGF 139
           ++ P L   LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ F
Sbjct: 296 KLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFES-QRMKF 355

Query: 140 LEIGKLL 147
            EI + L
Sbjct: 356 SEIPQRL 361

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BLAST of CmaCh14G019650 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA 60
           MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA 60

Query: 61  PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE 120
           PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE
Sbjct: 61  PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE 120

Query: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Sbjct: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of CmaCh14G019650 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 140/153 (91.50%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA 60
           MSSGFSNGIRVFRGC +LLAP KSSATVPP AVKS+T SKSN EPKEKTPPRSDVAAAAA
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAA 60

Query: 61  PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE 120
           PKPK +REMTR TG LKV QVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNP+NKRE
Sbjct: 61  PKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKRE 120

Query: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Sbjct: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of CmaCh14G019650 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVP-PAAVKSRTTSKSNTEPKEKTPPRSDVAAAA 60
           MSSG SNGIRVFRGCRALLAPSKSSA+VP  AA KS+ T K  +E KEKT P SD AAAA
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60

Query: 61  APKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPK+KREMTR  G LKV QVSPALGNFLGV EASRTDAVKQIWSYIKLHNLQNPANKR
Sbjct: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           EIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

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BLAST of CmaCh14G019650 vs. ExPASy TrEMBL
Match: A0A0A0L3V0 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-56
Identity = 123/157 (78.34%), Postives = 132/157 (84.08%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTE---PKEKTPPRSDVA- 60
           MSSGF+NGIRVFR CRALLAPSKSSATVP  A KS+TTSK   +   PK KTPP S  A 
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  AAAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPA 120
            AA P+PK+K+EM+R +G LKV QVSPAL NFLGVSEASR+DAV QIWSYIKLHNLQNP 
Sbjct: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           NKREIYCDDKLKAIFEGREKVGFLEIGK L RHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of CmaCh14G019650 vs. ExPASy TrEMBL
Match: A0A1S3AVG6 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103483375 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.0e-55
Identity = 120/156 (76.92%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTE-PKEKTPPRSDVAA-- 60
           MSSGF+NG+RVFR CR LLAPSKSSATVP  A KS+TT+K  T+ PK KTPP S  AA  
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60

Query: 61  AAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPAN 120
           AA P+PK+K+  +R +G LKV QVSPAL NFLGVSEASRTDAV QIWSYIKLHNLQNP N
Sbjct: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120

Query: 121 KREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           KREIYCDDKLKAIFEGREKV FLEIGK+L RHFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

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BLAST of CmaCh14G019650 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 7.3e-77
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA 60
           MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA 60

Query: 61  PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE 120
           PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE
Sbjct: 61  PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE 120

Query: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Sbjct: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of CmaCh14G019650 vs. NCBI nr
Match: XP_022924718.1 (upstream activation factor subunit spp27-like [Cucurbita moschata])

HSP 1 Score: 274.2 bits (700), Expect = 6.6e-70
Identity = 140/153 (91.50%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA 60
           MSSGFSNGIRVFRGC +LLAP KSSATVPP AVKS+T SKSN EPKEKTPPRSDVAAAAA
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAA 60

Query: 61  PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE 120
           PKPK +REMTR TG LKV QVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNP+NKRE
Sbjct: 61  PKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKRE 120

Query: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Sbjct: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of CmaCh14G019650 vs. NCBI nr
Match: KAG6582547.1 (hypothetical protein SDJN03_22549, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018930.1 UAF30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 140/153 (91.50%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA 60
           MSSGFSNGIRVFRGCR+LLAP KSSATVPP AVKS+T SKSN EPKEKTP RSDVAAAAA
Sbjct: 1   MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAA 60

Query: 61  PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE 120
           PKPK +REMTR TG LKV QVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNP+NKRE
Sbjct: 61  PKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKRE 120

Query: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Sbjct: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

[Close]

BLAST of CmaCh14G019650 vs. NCBI nr
Match: XP_022146901.1 (upstream activation factor subunit spp27-like [Momordica charantia])

HSP 1 Score: 251.5 bits (641), Expect = 4.6e-63
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVP-PAAVKSRTTSKSNTEPKEKTPPRSDVAAAA 60
           MSSG SNGIRVFRGCRALLAPSKSSA+VP  AA KS+ T K  +E KEKT P SD AAAA
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60

Query: 61  APKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPK+KREMTR  G LKV QVSPALGNFLGV EASRTDAVKQIWSYIKLHNLQNPANKR
Sbjct: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           EIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

[Close]

BLAST of CmaCh14G019650 vs. NCBI nr
Match: XP_023527131.1 (upstream activation factor subunit spp27-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.3 bits (617), Expect = 2.8e-60
Identity = 124/135 (91.85%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 19  LAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAAPKPKVKREMTRSTGFLKV 78
           L PSKSSATVPP AVKS+T SKSN EPKEKTPPRSDVAAAAAPKPK +REMTR TG LKV
Sbjct: 5   LTPSKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAAPKPKFQREMTRPTGLLKV 64

Query: 79  LQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVG 138
            QVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKVG
Sbjct: 65  FQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPTNKREIYCDDKLKAIFEGREKVG 124

Query: 139 FLEIGKLLTRHFVKN 154
           FLEIGKLLTRHFVKN
Sbjct: 125 FLEIGKLLTRHFVKN 139

[Close]

BLAST of CmaCh14G019650 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-33
Identity = 78/147 (53.06%), Postives = 97/147 (65.99%), Query Frame = 0


Query: 11  VFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAAPKPKVK---- 70
           VFRG R+LLAP+  + +   + V + +T K   +PK K          A PKPK K    
Sbjct: 8   VFRGARSLLAPASRATS---SLVSAGSTKKPAAKPKAK----------AKPKPKAKSDSP 67

Query: 71  -REMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDD 130
            ++  RSTG  KV  VSP L  FLG  E SRTDA+K IW+YIK H+LQNPA+KREI+CD+
Sbjct: 68  AKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDE 127

Query: 131 KLKAIFEGREKVGFLEIGKLLTRHFVK 153
            LK IFEG++KVGFLEI KLL+ HFVK
Sbjct: 128 TLKLIFEGKDKVGFLEISKLLSPHFVK 141

[Close]

BLAST of CmaCh14G019650 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 57  AAAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPA 116
           AA++   K  R+    TG LKV+ VS  L NF+G +E SRT AVK+IW YIKL+NLQNP 
Sbjct: 15  AASSTGAKTGRQ---GTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPV 74

Query: 117 NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           NKREI CD++LK IF G++ VGFLEI KLL++HF K+
Sbjct: 75  NKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of CmaCh14G019650 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 74  GFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEG 133
           G  K   VS  L +F G  E +R  A+K++W Y+KLHNLQNPANK+EI+CDDKLK IF+G
Sbjct: 32  GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query: 134 REKVGFLEIGKLLTRHFVKN 154
           ++KVG  EI KLL+ HF K+
Sbjct: 92  KDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of CmaCh14G019650 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-22
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 56  AAAAAPKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNP 115
           AAAA+  P    +     G +K   VS A+ + +GV E  RT A+K+IW+YIK H+LQ+P
Sbjct: 49  AAAASSDPTTTTKTREPRGIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDP 108

Query: 116 ANKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFV 152
            NKR+I CD+KLK IFEG+E+VGFLEI KL+  HF+
Sbjct: 109 QNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHFL 144

[Close]

BLAST of CmaCh14G019650 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-19
Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 32  AVKSRTTSK----SNTEPKEKTPPRSDVAAAAAPKPKVK--REMTRST------------ 91
           AV S T S       T  +  + P S +  A+ P  K++  R +T +T            
Sbjct: 2   AVSSGTFSTFLCIKTTSFRNPSTPLSSLRFASHPAAKLRLVRAVTSATESSEPTATNKRV 61

Query: 92  --GFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIF 151
             G +K   VSP + + + + E +RT A+K+IW+YIK H+LQ+P NKREI CD+KLK IF
Sbjct: 62  PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIF 121

The following BLAST results are available for this feature:

BLAST of CmaCh14G019650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05024	1.1e-11	39.29	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	7.2e-11	32.31	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
O74503	1.6e-10	36.36	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9P7S3	5.7e-08	40.58	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q2TBN1	2.0e-05	34.33	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of CmaCh14G019650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IWB1	3.5e-77	100.00	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1	[more]
A0A6J1EDA2	3.2e-70	91.50	upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1D0R8	2.2e-63	85.71	upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0L3V0	1.2e-56	78.34	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 S...	[more]
A0A1S3AVG6	1.0e-55	76.92	upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of CmaCh14G019650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022980440.1	7.3e-77	100.00	protein TRI1-like [Cucurbita maxima]	[more]
XP_022924718.1	6.6e-70	91.50	upstream activation factor subunit spp27-like [Cucurbita moschata]	[more]
KAG6582547.1	1.1e-69	91.50	hypothetical protein SDJN03_22549, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022146901.1	4.6e-63	85.71	upstream activation factor subunit spp27-like [Momordica charantia]	[more]
XP_023527131.1	2.8e-60	91.85	upstream activation factor subunit spp27-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh14G019650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	3.1e-33	53.06	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	1.1e-25	58.76	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	1.9e-22	57.50	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.9e-22	52.08	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	3.3e-19	41.43	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 75..152 e-value: 1.4E-29 score: 114.3
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 79..150 e-value: 1.9E-29 score: 101.3
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 74..152 score: 23.03639
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 69..153 e-value: 1.9E-28 score: 100.3
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 71..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..66
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..152
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 1..152
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 79..150 e-value: 2.0388E-35 score: 115.718

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G019650.1	CmaCh14G019650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus