CmaCh14G019340 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G019340
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description10 kDa chaperonin 1, chloroplastic-like
LocationCma_Chr14: 13618342 .. 13620074 (-)
RNA-Seq ExpressionCmaCh14G019340
SyntenyCmaCh14G019340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGCCTCTACATTCGTCACAGTGCCAAAGCCCTTTATCAACGCGGCTAATTCACCTCCGTATCTGCACGGCGACGAGTAATCGGTACGCTGATAAGTAAATCCGTTGATAGACTGTCGCATTTTCTTTTCTCGATCAATTTCTGTCGCGCTATCCGTCTTCTGAATTTCTGGATGTTTTTTCTTCTTGATTTTTGGATAGGAGGACTGCGAAGAAGCGCTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCGAAGGTAGTCCTCCCCTGCGATTTGAGTTTTTTTTTTTTTTCTTTCTTTTGTGTTATTGAACTCATGAACTTGATTTTTAATGCTTATTATTGACATTTTATGATGCTTTTGGATTTAAGGTGTTTCCTCAAGCTGATAGAGTATACTCGTCCGTCTTGAGCAGCGCCCTGAGGTAATCTCACGCTCAACAAAAATTGCGAATGAATTTGTAAAATTTGTAGAATTTGTTTGATGTATTATTGTCTATTACCTTCCGAGTTATTATATCCGATATAAATGCTTGTCAGGTAAGTCGTTTGGTTTGGTGGAGTCATCATATTGGCTTGAATATTCTCTCAATTATTTATGGTCCAGCTTTGCTTTTCAATTATTGGGTATCATACCACAAATGTGCTGCAATCAAGAATGCGGATGGATGTTGCTTTTTAACCATATCTTTGATTGTTAAAAGTGGAAAAAAAAAAAAAAAAAAACTTGTTCTCAGAAATCTGATCATAGGTTTAGTATGGATTATAAATTTGTTTGAATTGAGTTTGTCTATGCACCATTCCTCTTAGAATTGGATGTCGAAAAGGTCTTGGCTCAAAAAATCTGGTCATAGGGTTGGTTGGTTTACATTATAAGTCTTACATCAATCACCGTATGGGACTGTTACTAGAGATGCTTTTGTAGGAAATATGAATGGTTTGGCGATGCATCCTTGGAAGTCTTAGCTTCTAAGTTGTATCTTGCGTGTTAGCTGACCCTCTTATTCATGTCATAAAGTCTATTCATGTTCATCTTTCTGCTTTCCCTACACATTATTTTTCCTTCTGCTTCTCTCCATTTCGGATTTCGAAATGAAAGCAATGAGCTATACTCGGGGACCAAGATGCAGCCGTAGTAGCCTCTTAGTCGTACTTTAGTTAGTTCAAACTCTTACAAACTAAAGTTAGAACTTTCTTATATTTGTTGTTAATATGGCAAACAAATGCGAATGAACTATATTTGAATGAGTGTAATTATTATTTTATCTATTGAGCTATATTCAATCAACGAACACTAACACATTATTTTTTTAAGATTGATTTTGAATGTTGGTGGTGGTTTGTCAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAGCTTCCTCCAACACTACAATCAGATCAACATCAGATATTTTCACTCAGATTAGTTCTCTTCCCTGATTCTCATTTGCTTGTTGCTTCTGCAATATCTGATCTTTGTTTTTGTCTTTATTGCTTTGTGTGATCCGTATAAAGATATCAGTTCTTCTCATTAGGAAGAATACCTTACCTTAAATTATATTTTAAAAATTACTCAACCTTCAAAACAAAACTGAAGAAAAACAAGAATAAATGATTTTTTTTAATACTTTTTCCCCCTAGAGAATGTAAAACCCTTTTCAAATAAATGATTTTT

mRNA sequence

ATGGCGATGCCTCTACATTCGTCACAGTGCCAAAGCCCTTTATCAACGCGGCTAATTCACCTCCGTATCTGCACGGCGACGAGAGGACTGCGAAGAAGCGCTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCGAAGAGTATACTCGTCCGTCTTGAGCAGCGCCCTGAGAATTTGTTTGATGTATTATTGTCTATTACCTTCCGAGTTATTATATCCGATATAAATGCTTGTCAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAGCTTCCTCCAACACTACAATCAGATCAACATCAGATATTTTCACTCAGATTAGTTCTCTTCCCTGATTCTCATTTGCTTGTTGCTTCTGCAATATCTGATCTTTGTTTTTGTCTTTATTGCTTTGTGTGATCCGTATAAAGATATCAGTTCTTCTCATTAGGAAGAATACCTTACCTTAAATTATATTTTAAAAATTACTCAACCTTCAAAACAAAACTGAAGAAAAACAAGAATAAATGATTTTTTTTAATACTTTTTCCCCCTAGAGAATGTAAAACCCTTTTCAAATAAATGATTTTT

Coding sequence (CDS)

ATGGCGATGCCTCTACATTCGTCACAGTGCCAAAGCCCTTTATCAACGCGGCTAATTCACCTCCGTATCTGCACGGCGACGAGAGGACTGCGAAGAAGCGCTTTCAAAGTCCGCGCAGTTTCTAAGAAACGGGAGCCTGCGAAGAGTATACTCGTCCGTCTTGAGCAGCGCCCTGAGAATTTGTTTGATGTATTATTGTCTATTACCTTCCGAGTTATTATATCCGATATAAATGCTTGTCAGGTGGATTTGGGCACAGATTCTAAGCACTGTTTCTGCAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAG

Protein sequence

MAMPLHSSQCQSPLSTRLIHLRICTATRGLRRSAFKVRAVSKKREPAKSILVRLEQRPENLFDVLLSITFRVIISDINACQVDLGTDSKHCFCKAGDLLAVVE
Homology
BLAST of CmaCh14G019340 vs. ExPASy Swiss-Prot
Match: Q9M1C2 (10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPENLFDVLL----SITF-------- 88
           G+RR++F++ AVS K EPAK       +LVRLE  PE     +L    ++ F        
Sbjct: 31  GIRRNSFRINAVSTKWEPAKVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEV 90

Query: 89  --------------RVIISDINACQVDLGT-DSKHCFCKAGDLLAVVE 104
                         +V+ SD++A +VD GT D+KHCFCK  DLLA+V+
Sbjct: 91  VSVGSEVGEVEPGKKVLFSDMSAYEVDFGTEDAKHCFCKESDLLAIVQ 138

BLAST of CmaCh14G019340 vs. ExPASy Swiss-Prot
Match: O80504 (10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-08
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRP-ENLFDVLL---SITF-------- 88
           G RR   +++A+S K EP K       +LVRLE  P ++   VLL   ++ F        
Sbjct: 32  GSRRGCLRIKAISTKWEPTKVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEI 91

Query: 89  ---------------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
                          RV+ SD++A +VDLGTD++HCFCK  DLLA+VE
Sbjct: 92  ISVGSEVGQQVGPGKRVLFSDVSAYEVDLGTDARHCFCKESDLLALVE 139

BLAST of CmaCh14G019340 vs. ExPASy TrEMBL
Match: A0A0A0L6L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128890 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.8e-12
Identity = 52/111 (46.85%), Postives = 63/111 (56.76%), Query Frame = 0

Query: 27  TRGLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFD 86
           T GLR S  KV A+SKK EPAK       +LVRLE+ PE                  L  
Sbjct: 31  TGGLRSSNLKVSAISKKWEPAKVVPQADRVLVRLEELPEKSVGGVLLPKSAVKFERYLVG 90

Query: 87  VLLSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           V+LS+             +V++SDINA +VDLGTD+KHCFCKAGDLLA+VE
Sbjct: 91  VILSVGTEVGGNDIAPGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAIVE 141

BLAST of CmaCh14G019340 vs. ExPASy TrEMBL
Match: A0A6J1ICA1 (10 kDa chaperonin 1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473490 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-11
Identity = 52/111 (46.85%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 27  TRGLRRSAFKVRAVSKKREPAK------SILVRLEQRPE-----------------NLFD 86
           T G RRS+ KV AVSKK EP K       +L+RLE+ PE                 +L  
Sbjct: 30  TGGFRRSSLKVSAVSKKWEPTKVVPQADRVLLRLEELPEKSAGGVLLPKSAVKFERHLVG 89

Query: 87  VLLSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
            +LSI             +VI+SDINA +VDLGTD+KHCFCKA DLLAVVE
Sbjct: 90  EILSIGSEVGGSDLAPGKKVILSDINAYEVDLGTDAKHCFCKASDLLAVVE 140

BLAST of CmaCh14G019340 vs. ExPASy TrEMBL
Match: A0A5D3CZW2 (10 kDa chaperonin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003170 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-11
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GLR S  KV A+S+K EPAK       +LVRLE+ PE                  L   +
Sbjct: 33  GLRSSTLKVSAISRKWEPAKVVPQADRVLVRLEELPEKSAGGVLLPKSAVKFERYLVGEI 92

Query: 89  LSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+             +V++SDINA +VDLGTD+KHCFCKAGDLLAVVE
Sbjct: 93  LSVGAEVGGNDIAPGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAVVE 141

BLAST of CmaCh14G019340 vs. ExPASy TrEMBL
Match: A0A6J1FCS3 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442821 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-11
Identity = 52/111 (46.85%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 27  TRGLRRSAFKVRAVSKKREPAK------SILVRLEQRPE-----------------NLFD 86
           T G RRS+ KV AVSKK EP K       +L+RLE+ PE                 +L  
Sbjct: 30  TGGFRRSSLKVSAVSKKWEPTKVVPQADRVLLRLEELPEKSAGGVLLPKSAVKFERHLVG 89

Query: 87  VLLSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
            +LSI             +VI+SDINA +VDLGTD+KHCFCKA DLLAVVE
Sbjct: 90  EILSIGSEVGGSDLAPGKKVILSDINAYEVDLGTDAKHCFCKASDLLAVVE 140

BLAST of CmaCh14G019340 vs. ExPASy TrEMBL
Match: A0A1S3AWL8 (10 kDa chaperonin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-11
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GLR S  KV A+S+K EPAK       +LVRLE+ PE                  L   +
Sbjct: 33  GLRSSTLKVSAISRKWEPAKVVPQADRVLVRLEELPEKSAGGVLLPKSAVKFERYLVGEI 92

Query: 89  LSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+             +V++SDINA +VDLGTD+KHCFCKAGDLLAVVE
Sbjct: 93  LSVGAEVGGNDIAPGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAVVE 141

BLAST of CmaCh14G019340 vs. NCBI nr
Match: XP_004133964.1 (10 kDa chaperonin 1, chloroplastic [Cucumis sativus] >KGN56679.1 hypothetical protein Csa_010283 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 52/111 (46.85%), Postives = 63/111 (56.76%), Query Frame = 0

Query: 27  TRGLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFD 86
           T GLR S  KV A+SKK EPAK       +LVRLE+ PE                  L  
Sbjct: 31  TGGLRSSNLKVSAISKKWEPAKVVPQADRVLVRLEELPEKSVGGVLLPKSAVKFERYLVG 90

Query: 87  VLLSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           V+LS+             +V++SDINA +VDLGTD+KHCFCKAGDLLA+VE
Sbjct: 91  VILSVGTEVGGNDIAPGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAIVE 141

BLAST of CmaCh14G019340 vs. NCBI nr
Match: KAG7028719.1 (10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 53/114 (46.49%), Postives = 63/114 (55.26%), Query Frame = 0

Query: 27  TRGLRRSAFKVRAVSKKREPAK------SILVRLEQRPE-----------------NLFD 86
           TRG RRS+ KV AVSKK EP K       +L+RLE+ PE                 +L  
Sbjct: 35  TRGFRRSSLKVSAVSKKWEPTKVVPQADRVLLRLEELPEKSAGGVLLPKSAVKFERHLVG 94

Query: 87  VLLSI--------------TFRVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
            +LSI                +VI+SDINA +VDLGTD+KHCFCKA DLLAVVE
Sbjct: 95  EILSIGSEVGGSDLAPGKKVIKVILSDINAYEVDLGTDAKHCFCKASDLLAVVE 148

BLAST of CmaCh14G019340 vs. NCBI nr
Match: KAG7946052.1 (hypothetical protein I3843_14G018600 [Carya illinoinensis])

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GLRR++ ++ A+SKK EPAK       +L+RLEQ PE                  L   +
Sbjct: 29  GLRRNSLRINAISKKWEPAKVVPQADRVLIRLEQLPEKSAGGVLLPTAAVKFERYLIGEI 88

Query: 89  LSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+           +V+ SDINA +VDLGTDSKHCFCK+ DLLAVVE
Sbjct: 89  LSVGAEVGEVEAGKKVLFSDINAYEVDLGTDSKHCFCKSSDLLAVVE 135

BLAST of CmaCh14G019340 vs. NCBI nr
Match: KAG6677307.1 (hypothetical protein I3842_14G019300 [Carya illinoinensis])

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GLRR++ ++ A+SKK EPAK       +L+RLEQ PE                  L   +
Sbjct: 29  GLRRNSLRINAISKKWEPAKVVPQADRVLIRLEQLPEKSAGGVLLPKAAVKFEQYLIGEI 88

Query: 89  LSITF---------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+           +V+ SDINA +VDLGTDSKHCFCK+ DLLAVVE
Sbjct: 89  LSVGAEVGEVEAGKKVLFSDINAYEVDLGTDSKHCFCKSSDLLAVVE 135

BLAST of CmaCh14G019340 vs. NCBI nr
Match: XP_038880425.1 (10 kDa chaperonin 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-10
Identity = 50/109 (45.87%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPEN-----------------LFDVL 88
           GLR S  KV A+SKK EPAK       +LVRLE+ PE                  L   +
Sbjct: 32  GLRSSTLKVSAISKKLEPAKVVPQADRVLVRLEELPEKSAGGVLLPKSAVKFERYLVGEI 91

Query: 89  LSITF-----------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
           LS+             +V++SD+NA +VDLGTD+KHCFCKAGDLLAVVE
Sbjct: 92  LSVGTDVGGNDIAPGKKVLLSDMNAYEVDLGTDAKHCFCKAGDLLAVVE 140

BLAST of CmaCh14G019340 vs. TAIR 10
Match: AT2G44650.1 (chloroplast chaperonin 10 )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRP-ENLFDVLL---SITF-------- 88
           G RR   +++A+S K EP K       +LVRLE  P ++   VLL   ++ F        
Sbjct: 32  GSRRGCLRIKAISTKWEPTKVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEI 91

Query: 89  ---------------RVIISDINACQVDLGTDSKHCFCKAGDLLAVVE 104
                          RV+ SD++A +VDLGTD++HCFCK  DLLA+VE
Sbjct: 92  ISVGSEVGQQVGPGKRVLFSDVSAYEVDLGTDARHCFCKESDLLALVE 139

BLAST of CmaCh14G019340 vs. TAIR 10
Match: AT3G60210.1 (GroES-like family protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 29  GLRRSAFKVRAVSKKREPAK------SILVRLEQRPENLFDVLL----SITF-------- 88
           G+RR++F++ AVS K EPAK       +LVRLE  PE     +L    ++ F        
Sbjct: 31  GIRRNSFRINAVSTKWEPAKVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEV 90

Query: 89  --------------RVIISDINACQVDLGT-DSKHCFCKAGDLLAVVE 104
                         +V+ SD++A +VD GT D+KHCFCK  DLLA+V+
Sbjct: 91  VSVGSEVGEVEPGKKVLFSDMSAYEVDFGTEDAKHCFCKESDLLAIVQ 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M1C21.7e-0837.9610 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE... [more]
O805041.7e-0837.9610 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE... [more]
Match NameE-valueIdentityDescription
A0A0A0L6L97.8e-1246.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128890 PE=4 SV=1[more]
A0A6J1ICA16.6e-1146.8510 kDa chaperonin 1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 G... [more]
A0A5D3CZW26.6e-1145.8710 kDa chaperonin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6J1FCS36.6e-1146.8510 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A1S3AWL86.6e-1145.8710 kDa chaperonin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_004133964.11.6e-1146.8510 kDa chaperonin 1, chloroplastic [Cucumis sativus] >KGN56679.1 hypothetical pr... [more]
KAG7028719.11.6e-1146.4910 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyr... [more]
KAG7946052.11.0e-1044.86hypothetical protein I3843_14G018600 [Carya illinoinensis][more]
KAG6677307.11.0e-1044.86hypothetical protein I3842_14G019300 [Carya illinoinensis][more]
XP_038880425.11.0e-1045.8710 kDa chaperonin 1, chloroplastic-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT2G44650.11.2e-0937.96chloroplast chaperonin 10 [more]
AT3G60210.11.2e-0937.96GroES-like family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G019340.1CmaCh14G019340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding