CmaCh14G017830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G017830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Alba domain-containing protein
Location	Cma_Chr14: 12904601 .. 12905903 (+)
RNA-Seq Expression	CmaCh14G017830
Synteny	CmaCh14G017830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATCTTCGGGGCGGACCAGTCACCGGAAAATGCTGTAACTGCCAGTATACGGCTGCTAAAACGAAACCGTTGATATCTTAACCGCCCAAACGCTTCCGTCGAAACAAACAGGGATTCTCCTATTTCCGATTATAAATTACTCCCGCAGTTGGATTCGATTTTACCGAAGTTCAGAATTAGTAGTAGAATCTTTTCCTTCTTCTGCACAGTACTCTTTTAGCGATAATGGAGTCCGGCATGGTCGTCTCAGAAGCCACCTCTGAGGTCAAGAATGAAATCCGTAATGAGGAGGAAAAGCTCCTGGTCGTTGCTCCCGATGTTGAGGTTAAGGAGATCGCTGTTTTGACCGAGATCAAGAAGAAGAGGAACCAAATCCAGGTTTCCAATGTCAAGAAGCCGTTCTTCTACTACTACAATCTTTCTAAGGTATTCATTTTTGCGATCCTCTGGGCCTTTCTGTTGAATCAATTTCTTTATTAGATAATCAAAACCGTGATTGATTCGACGTTTGCAGAGGTACATCAAGCAGTACAACGAAGTTGAGCTCTCTGCCCTAGGAATGGGTACAAGTTTTCTTGAATCCATTTCTTTTTCATATTTTGTTAACAGATCGATGTGGATAACTGGATTGAGTTCCAATCATTCATTGATTCATATTTCATAATACAGCTATACCTACTGTAGTGACGATCGCCGAGATTCTGAAGAAGAATGGATTAGCATTTCAAAAGTGTAGGAAAATTTATCGAATACATTGGCGATTTAATTTGTGTTTGGGAACACTGCTGTCTTTAAACACGATTCTGTTATTTGGAAATTTCTGCAGATTTGACGATATCTTCTGTAAGCTTGAAGAATGGGGAAAATGATAGGCTGGTTATGAAACCTAAGGTTACTGCTTACTAATGCAAATATATTGGCCAAGTTTTGGATGTTTTAATGATGTGTTCTTCTTCATCTTGTTTGCTAGATTGAGATTGCCCTGATAAATGCAGAAAAGATGAAGAAAATTTCGACTGCTACAACAAGTGAAGATTCCTGATATGAGTTTTGTTAGTGTAGTATCATCTCGGATGTGGCTTTTCTTCTTGTTTAGCCTACTTTGTCCAGAGTTTCTACAGGAGATTGGAGATTTGGTAGCGAATAGGCGAGTGAATGGCAGAGCTTTTGGTCGAAGTAGATTCAATCCTAACAGAACTAAAGGAGAAGAGTCCATTGTTAAAGATTTGGATGTAGAGCAGCTTTCTTTGTAATTCAACTACCAAATTCTAATTGCATATAAAATTGAATGAACAGACTGAT

mRNA sequence

ATATCTTCGGGGCGGACCAGTCACCGGAAAATGCTGTAACTGCCAGTATACGGCTGCTAAAACGAAACCGTTGATATCTTAACCGCCCAAACGCTTCCGTCGAAACAAACAGGGATTCTCCTATTTCCGATTATAAATTACTCCCGCAGTTGGATTCGATTTTACCGAAGTTCAGAATTAGTAGTAGAATCTTTTCCTTCTTCTGCACAGTACTCTTTTAGCGATAATGGAGTCCGGCATGGTCGTCTCAGAAGCCACCTCTGAGGTCAAGAATGAAATCCGTAATGAGGAGGAAAAGCTCCTGGTCGTTGCTCCCGATGTTGAGGTTAAGGAGATCGCTGTTTTGACCGAGATCAAGAAGAAGAGGAACCAAATCCAGGTTTCCAATGTCAAGAAGCCGTTCTTCTACTACTACAATCTTTCTAAGAGGTACATCAAGCAGTACAACGAAGTTGAGCTCTCTGCCCTAGGAATGGCTATACCTACTGTAGTGACGATCGCCGAGATTCTGAAGAAGAATGGATTAGCATTTCAAAAGTATTTGACGATATCTTCTGTAAGCTTGAAGAATGGGGAAAATGATAGGCTGGTTATGAAACCTAAGATTGAGATTGCCCTGATAAATGCAGAAAAGATGAAGAAAATTTCGACTGCTACAACAAGTGAAGATTCCTGATATGAGTTTTGTTAGTGTAGTATCATCTCGGATGTGGCTTTTCTTCTTGTTTAGCCTACTTTGTCCAGAGTTTCTACAGGAGATTGGAGATTTGGTAGCGAATAGGCGAGTGAATGGCAGAGCTTTTGGTCGAAGTAGATTCAATCCTAACAGAACTAAAGGAGAAGAGTCCATTGTTAAAGATTTGGATGTAGAGCAGCTTTCTTTGTAATTCAACTACCAAATTCTAATTGCATATAAAATTGAATGAACAGACTGAT

Coding sequence (CDS)

ATGGAGTCCGGCATGGTCGTCTCAGAAGCCACCTCTGAGGTCAAGAATGAAATCCGTAATGAGGAGGAAAAGCTCCTGGTCGTTGCTCCCGATGTTGAGGTTAAGGAGATCGCTGTTTTGACCGAGATCAAGAAGAAGAGGAACCAAATCCAGGTTTCCAATGTCAAGAAGCCGTTCTTCTACTACTACAATCTTTCTAAGAGGTACATCAAGCAGTACAACGAAGTTGAGCTCTCTGCCCTAGGAATGGCTATACCTACTGTAGTGACGATCGCCGAGATTCTGAAGAAGAATGGATTAGCATTTCAAAAGTATTTGACGATATCTTCTGTAAGCTTGAAGAATGGGGAAAATGATAGGCTGGTTATGAAACCTAAGATTGAGATTGCCCTGATAAATGCAGAAAAGATGAAGAAAATTTCGACTGCTACAACAAGTGAAGATTCCTGA

Protein sequence

MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDRLVMKPKIEIALINAEKMKKISTATTSEDS

Homology

[Close]

BLAST of CmaCh14G017830 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.2e-24
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 45  KKRNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQK 104
           +K+N+IQVSN KKP F+Y NL+KRY++QYN+VELSALGMAI TVVT+ EILK NG A +K
Sbjct: 18  QKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEK 77

Query: 105 YLTISSVSLKNGENDRLVMKPKIEIALINAEKMKKISTATTSE 148
            +  S+V +K+    R V K KIEI L+ +EK  ++  A   E
Sbjct: 78  KIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

[Close]

BLAST of CmaCh14G017830 vs. ExPASy TrEMBL
Match: A0A6J1IXN8 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111480105 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.9e-70
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF
Sbjct: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR
Sbjct: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120

Query: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 150
           LVMKPKIEIALINAEKMKKISTATTSEDS
Sbjct: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 149

[Close]

BLAST of CmaCh14G017830 vs. ExPASy TrEMBL
Match: A0A6J1EFH1 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111432040 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.0e-68
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           MESGMVVSEA SE+KNEIRNEEEKLLVVAPD EVKEIAVLTEIKKKRNQIQVSNVKKPFF
Sbjct: 1   MESGMVVSEAISELKNEIRNEEEKLLVVAPDGEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR
Sbjct: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120

Query: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 150
           LVMKPKIEIALINAEKMKKISTATTSEDS
Sbjct: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 149

[Close]

BLAST of CmaCh14G017830 vs. ExPASy TrEMBL
Match: A0A5D3CZ81 (Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001140 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.4e-61
Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           M+SG VVSEAT EVKNEI+NEEEKLLV APD EVKEIAVLTE KKKRNQIQVSNVKKPFF
Sbjct: 1   MDSGTVVSEATPEVKNEIQNEEEKLLVTAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGLAFQK LTISSVSLKNGEN +
Sbjct: 61  YYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKNLTISSVSLKNGENGK 120

Query: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 150
           LVMKPKIEIAL+NAEK+K ISTA TSEDS
Sbjct: 121 LVMKPKIEIALVNAEKIKNISTAPTSEDS 149

[Close]

BLAST of CmaCh14G017830 vs. ExPASy TrEMBL
Match: A0A1S3AXD3 (uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103483640 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.4e-61
Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           M+SG VVSEAT EVKNEI+NEEEKLLV APD EVKEIAVLTE KKKRNQIQVSNVKKPFF
Sbjct: 1   MDSGTVVSEATPEVKNEIQNEEEKLLVTAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGLAFQK LTISSVSLKNGEN +
Sbjct: 61  YYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKNLTISSVSLKNGENGK 120

Query: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 150
           LVMKPKIEIAL+NAEK+K ISTA TSEDS
Sbjct: 121 LVMKPKIEIALVNAEKIKNISTAPTSEDS 149

[Close]

BLAST of CmaCh14G017830 vs. ExPASy TrEMBL
Match: A0A0A0L8F8 (Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G142990 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 132/149 (88.59%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           M+SGMVVSEA  EVKNEIRNEEE+LLV APD EVKEIAVLTE KKKRNQIQVSNVKKPFF
Sbjct: 1   MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGLAFQK L ISSVSLKNGEN +
Sbjct: 61  YYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGK 120

Query: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 150
           LVMKPKIEIAL+NAEK+K ISTA TSEDS
Sbjct: 121 LVMKPKIEIALVNAEKIKNISTAPTSEDS 149

[Close]

BLAST of CmaCh14G017830 vs. NCBI nr
Match: XP_022980835.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF
Sbjct: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR
Sbjct: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120

Query: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 150
           LVMKPKIEIALINAEKMKKISTATTSEDS
Sbjct: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 149

[Close]

BLAST of CmaCh14G017830 vs. NCBI nr
Match: XP_022924600.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023528324.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           MESGMVVSEA SE+KNEIRNEEEKLLVVAPD EVKEIAVLTEIKKKRNQIQVSNVKKPFF
Sbjct: 1   MESGMVVSEAISELKNEIRNEEEKLLVVAPDGEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR
Sbjct: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120

Query: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 150
           LVMKPKIEIALINAEKMKKISTATTSEDS
Sbjct: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 149

[Close]

BLAST of CmaCh14G017830 vs. NCBI nr
Match: KAG7018769.1 (hypothetical protein SDJN02_20642 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.5 bits (667), Expect = 4.3e-66
Identity = 146/151 (96.69%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           MESGMVVSEA SEVKNEIRNEEEKLLVVAPD EVKEIAVLTEIKKKRNQIQVSNVKKPFF
Sbjct: 1   MESGMVVSEAISEVKNEIRNEEEKLLVVAPDGEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGM--AIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGEN 120
           YYYNLSKRYIKQYNEVELSALGM   IPTVVTIAEILKKNGLAFQKYLTISSVSLKNGEN
Sbjct: 61  YYYNLSKRYIKQYNEVELSALGMGTTIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGEN 120

Query: 121 DRLVMKPKIEIALINAEKMKKISTATTSEDS 150
           DRLVMKPKIEIALINAEKMKKISTATTSEDS
Sbjct: 121 DRLVMKPKIEIALINAEKMKKISTATTSEDS 151

[Close]

BLAST of CmaCh14G017830 vs. NCBI nr
Match: KAG6582358.1 (hypothetical protein SDJN03_22360, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.4 bits (664), Expect = 9.6e-66
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           MESGMVVSEA SEVKNEIRNEEEKLLVVAPD EVKEIAVLTEIKKKRNQIQVSNVK+PFF
Sbjct: 1   MESGMVVSEAISEVKNEIRNEEEKLLVVAPDGEVKEIAVLTEIKKKRNQIQVSNVKRPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR
Sbjct: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120

Query: 121 LVMKPKIEIALINAEKMKKISTATT 146
           LVMKPKIEIALINAEKMKKISTATT
Sbjct: 121 LVMKPKIEIALINAEKMKKISTATT 145

[Close]

BLAST of CmaCh14G017830 vs. NCBI nr
Match: XP_008438573.1 (PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0049297.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa] >TYK17261.1 alba DNA/RNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 7.1e-61
Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 1   MESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFF 60
           M+SG VVSEAT EVKNEI+NEEEKLLV APD EVKEIAVLTE KKKRNQIQVSNVKKPFF
Sbjct: 1   MDSGTVVSEATPEVKNEIQNEEEKLLVTAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFF 60

Query: 61  YYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDR 120
           YYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGLAFQK LTISSVSLKNGEN +
Sbjct: 61  YYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKNLTISSVSLKNGENGK 120

Query: 121 LVMKPKIEIALINAEKMKKISTATTSEDS 150
           LVMKPKIEIAL+NAEK+K ISTA TSEDS
Sbjct: 121 LVMKPKIEIALVNAEKIKNISTAPTSEDS 149

[Close]

BLAST of CmaCh14G017830 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-25
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 45  KKRNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQK 104
           +K+N+IQVSN KKP F+Y NL+KRY++QYN+VELSALGMAI TVVT+ EILK NG A +K
Sbjct: 18  QKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEK 77

Query: 105 YLTISSVSLKNGENDRLVMKPKIEIALINAEKMKKISTATTSE 148
            +  S+V +K+    R V K KIEI L+ +EK  ++  A   E
Sbjct: 78  KIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

[Close]

BLAST of CmaCh14G017830 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 45  KKRNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQK 104
           +K+N+IQVSN KKP F+Y NL+KRY++QY +VELSALGMAI TVVT+AEILK NG A +K
Sbjct: 18  QKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAVEK 77

Query: 105 YLTISSVSLKNGENDRLVMKPKIEIALINAEKMKKISTATTSE 148
            +  S+V +K+    R V K KIEI L  +EK  ++  A   E
Sbjct: 78  KIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEE 120

[Close]

BLAST of CmaCh14G017830 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-24
Identity = 63/124 (50.81%), Postives = 84/124 (67.74%), Query Frame = 0


Query: 23  EKLLVVAPDVEVKEIAVLTEIKKKRNQIQVSNVKKPFFYYYNLSKRYIKQYNEVELSALG 82
           E+ +V+AP        V T    K+N+IQVSN KKP F+Y NL+KRYI+Q+NEVELSALG
Sbjct: 16  ERNIVLAPATTTTTATVETH---KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALG 75

Query: 83  MAIPTVVTIAEILKKNGLAFQKYLTISSVSLKNGENDRLVMKPKIEIALINAEKMKKIST 142
           MAI TVVTI+EILK NGLA +K +  S+V +K+    ++V K KIEI L  ++K   +  
Sbjct: 76  MAITTVVTISEILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVP 135

Query: 143 ATTS 147
             T+
Sbjct: 136 PVTN 136

The following BLAST results are available for this feature:

BLAST of CmaCh14G017830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	4.2e-24	55.34	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of CmaCh14G017830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IXN8	6.9e-70	100.00	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114801...	[more]
A0A6J1EFH1	5.0e-68	97.99	uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A5D3CZ81	3.4e-61	89.26	Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AXD3	3.4e-61	89.26	uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103483640 P...	[more]
A0A0A0L8F8	1.0e-60	88.59	Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G142990 PE=4 S...	[more]

BLAST of CmaCh14G017830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022980835.1	1.4e-69	100.00	uncharacterized protein At2g34160-like [Cucurbita maxima]	[more]
XP_022924600.1	1.0e-67	97.99	uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023528324.1 unch...	[more]
KAG7018769.1	4.3e-66	96.69	hypothetical protein SDJN02_20642 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6582358.1	9.6e-66	97.93	hypothetical protein SDJN03_22360, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008438573.1	7.1e-61	89.26	PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0049297.1 a...	[more]

BLAST of CmaCh14G017830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34160.1	3.0e-25	55.34	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	1.1e-24	55.34	Alba DNA/RNA-binding protein	[more]
AT3G04620.1	4.4e-24	50.81	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 48..100 e-value: 1.8E-10 score: 40.5
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 46..149 e-value: 3.0E-36 score: 125.9
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 48..137
None	No IPR available	PANTHER	PTHR31947:SF19	ALBA DNA/RNA-BINDING PROTEIN	coord: 6..146
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 6..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G017830.1	CmaCh14G017830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding