CmaCh14G017810 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G017810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Zinc finger, CCHC-type
Location	Cma_Chr14: 12891396 .. 12893779 (-)
RNA-Seq Expression	CmaCh14G017810
Synteny	CmaCh14G017810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAAAGCTTCATGTAAACTGTGACCGCAAATCCCCCATGGTAGTCGGTTTCTCTCACCTGCAACTCTTTTCCCCTGATCCTTTTCCTCCCATTCCATTTCTCCATCTATCCTCTATCTCCGTTTGATTTTCACTGGGTTTCAACTTTGAGCTCAAGTTTTGTAGAACAAAGCAGCTTTTTATGGATTTAAGGGATATGAGGTACGTGGGTCTCGTTAGATTTCTGTATACTCTGATGGGTATCTGCCAATTTTGTTGCTGTTTTTTGTTTATTCAACTTCTTGTTGTTCATCATCCTTCATTTCTCTCTATGATTCGGAAAGTGATTCTGTGAAATTTGAACTACTGATGTGTTTTTATGGGTTTGAGTTAATTTGTGATTGCTTCTCTTTGGGCGACATTTGGATGGTGATAATTTGAGTTGGAAACTTCTTTCGATTCATGTGAACCTTGAAACAGTACACAGTAGAAAATGGATTAATATTACCTTAGGACATCTCATTGTTCCACTACGTTTGTGTAGCCCTTTCCAAAAGCTGCAACTGACATTGAAAATCCAGGAAACGAAACTTGTTGCTTCTTCTCTAAGAATTAGATTCACACACATGGAGAGTGGCTAACTTCTGAAAGATGGGACTGTTAAGATTGTCTATGTACATCTTATCCGAGTTAATTGTTATTTTTTGCTGCTTTAGAGGAACTGTGATCTTTTTTTGGTGTTTTCTTGTTTGTCTCTATGTAATGTGCTGTAATCAATGTATGTGCATATTACTTGTTTATACGTTTGGATTTTGTGAGCCTAGAATAATTGTCATGTAATATATAGACCTGTATATTTTGTTTTAGCAAGGGATATTGCAGTTGGACATTCATCTATGGATACTCAAATTTATCCTATATCAGTGTATCTCATAAGTCAGAACAATAATCTTTTTACCCTTGAAACCCATCATACCCTTTATCTCGAGCTCGAAATTGCTTTTATAAGCTGGGTAAAGGGGTGGGTATCCGCTGCTTAGTTATCCACCTTGTTGCAAAAGCCATCATAACCTTTATCACAAGCTCAATATTGCTTTTATATTCTGGCTAAAGATAGGACTTATATGAGAATCGTTTGCTTAATTGCCACCTTGCTGTCCCTTGCTGCAAAAGGTAACTTTGGAATGATACAAAACATTGATTTTCGTTACTTGGATTGGCGATATTTCTTCGTAACATGCATACAAATGCTGGACTGTCTCTACAAGTACAAACTATTGGAATGACTTCTTATCGGTCTAGTTTGAAACAAATTGGAATGATCTTTTCATGAGTTAAAATAATGTTTGCGTAACTTTCTCCTTTCTGTTCTGTCATATTTCTTGCCTGTTGTATAGTCTTCCACTTACGTGCTAGCGATTGCATCAACCCTTAATGTTGCATTATGTGCTTCCTCGTGCGATAAACTGAAGGTAGGAGTTCTTTTTTCTTTCTTCTCAAAAAAAAAAAAAAGGTGCAACAAAACACAACTAATGTGAGCCCAATTGCAGAGCGGATAATTGAGGTATTGCACTGAAGATGAATGAGGACTATAAAAGCATTGAACCGGGGACGGATTTAGGACTTGGGTTGGGTCACACAGACCAATGTATTCAGGGAAGATTGACCAACAAATTAGGTGTAGGTGCAAATGCAGGTTCAATGGTGGATGTGAAATATGTTACCACCGACTCCCTGTCTGAACTAGTTTGGTCTCCACACAAAGGTTTGAGCCTTAGATGCGCCAATTCCAGCTTCAATAATAGAAAAACTCCGATCTTGTGGGATGCAGCTGCCAATAACGCAAGTTTTGTACTGCCACGAAGTGTAATAGCAGGGAAATCTACTTCCAATAATTTACTTGATAATAGAACTATTACTATTTCACAAGCAGAGAGTCAATTGAAGAATATATCTGAGGGTAAACAAACTTCAAATAATACCAGTTCTGATGATGCTGCCTGCATGACAAGCGAAGCTCATATGCATAAACTAAAAAAAGGTATATTTTAGCTGATGGTTGTTTAAATGTATACTATGTGAAAGTTTTACGAATCCAAGTCGATCATACTGCATCTTTCATCATATTTTGTTTAATATGCTTGCTAGTTCTTTCTGCCCAATTATATTCTTGTTCCTTGAGTCTTTTCCCAGTTAGGATGCACTTACCTTCCAGGGGTGGGAAACCTTGCAAACGAAACAGTTTGCAGGGCAGCAGTATCTGTTGTATGTTCTAAACAGGAAGATCTACAAGCAACTGGAGTGGATATAACTGATGCAGGAAACATTCCGGTGAACGAAGTATTGACAGTTGGGAAAAATGACTGGGAAAAATGA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAAAGCTTCATGTAAACTGTGACCGCAAATCCCCCATGGTAGTCGGTTTCTCTCACCTGCAACTCTTTTCCCCTGATCCTTTTCCTCCCATTCCATTTCTCCATCTATCCTCTATCTCCGTTTGATTTTCACTGGGTTTCAACTTTGAGCTCAAGTTTTGTAGAACAAAGCAGCTTTTTATGGATTTAAGGGATATGAGTCTTCCACTTACGTGCTAGCGATTGCATCAACCCTTAATGTTGCATTATGTGCTTCCTCGTGCGATAAACTGAAGAGCGGATAATTGAGGTATTGCACTGAAGATGAATGAGGACTATAAAAGCATTGAACCGGGGACGGATTTAGGACTTGGGTTGGGTCACACAGACCAATGTATTCAGGGAAGATTGACCAACAAATTAGGTGTAGGTGCAAATGCAGGTTCAATGGTGGATGTGAAATATGTTACCACCGACTCCCTGTCTGAACTAGTTTGGTCTCCACACAAAGGTTTGAGCCTTAGATGCGCCAATTCCAGCTTCAATAATAGAAAAACTCCGATCTTGTGGGATGCAGCTGCCAATAACGCAAGTTTTGTACTGCCACGAAGTGTAATAGCAGGGAAATCTACTTCCAATAATTTACTTGATAATAGAACTATTACTATTTCACAAGCAGAGAGTCAATTGAAGAATATATCTGAGGGTAAACAAACTTCAAATAATACCAGTTCTGATGATGCTGCCTGCATGACAAGCGAAGCTCATATGCATAAACTAAAAAAAGGGGTGGGAAACCTTGCAAACGAAACAGTTTGCAGGGCAGCAGTATCTGTTGTATGTTCTAAACAGGAAGATCTACAAGCAACTGGAGTGGATATAACTGATGCAGGAAACATTCCGGTGAACGAAGTATTGACAGTTGGGAAAAATGACTGGGAAAAATGA

Coding sequence (CDS)

ATGAATGAGGACTATAAAAGCATTGAACCGGGGACGGATTTAGGACTTGGGTTGGGTCACACAGACCAATGTATTCAGGGAAGATTGACCAACAAATTAGGTGTAGGTGCAAATGCAGGTTCAATGGTGGATGTGAAATATGTTACCACCGACTCCCTGTCTGAACTAGTTTGGTCTCCACACAAAGGTTTGAGCCTTAGATGCGCCAATTCCAGCTTCAATAATAGAAAAACTCCGATCTTGTGGGATGCAGCTGCCAATAACGCAAGTTTTGTACTGCCACGAAGTGTAATAGCAGGGAAATCTACTTCCAATAATTTACTTGATAATAGAACTATTACTATTTCACAAGCAGAGAGTCAATTGAAGAATATATCTGAGGGTAAACAAACTTCAAATAATACCAGTTCTGATGATGCTGCCTGCATGACAAGCGAAGCTCATATGCATAAACTAAAAAAAGGGGTGGGAAACCTTGCAAACGAAACAGTTTGCAGGGCAGCAGTATCTGTTGTATGTTCTAAACAGGAAGATCTACAAGCAACTGGAGTGGATATAACTGATGCAGGAAACATTCCGGTGAACGAAGTATTGACAGTTGGGAAAAATGACTGGGAAAAATGA

Protein sequence

MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSPHKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAESQLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQATGVDITDAGNIPVNEVLTVGKNDWEK

Homology

[Close]

BLAST of CmaCh14G017810 vs. ExPASy TrEMBL
Match: A0A6J1E903 (uncharacterized protein LOC111431954 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431954 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.0e-107
Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDV+YVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVEYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES
Sbjct: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
           QLKNISEGKQTSNNTSSDDAACMTSEAHMHKL+KGVGNLANETVCRAAVSVVCSKQEDLQ
Sbjct: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLQKGVGNLANETVCRAAVSVVCSKQEDLQ 180

Query: 181 ATGVDITDAGNIPVNEVLTVGKND 205
           ATG DITDAGNIPVNEVLTVGKND
Sbjct: 181 ATGADITDAGNIPVNEVLTVGKND 204

[Close]

BLAST of CmaCh14G017810 vs. ExPASy TrEMBL
Match: A0A0A0L7A1 (Plus3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G143500 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 172/205 (83.90%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLG+TDQ IQGRLTN+ GVGANAGSMVDVKYVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGYTDQYIQGRLTNRSGVGANAGSMVDVKYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           HKGLSLRCA+SSFNNRKT ILWDAAAN A+F LP+SVIA KSTSNNLLDNRTI +SQAES
Sbjct: 61  HKGLSLRCADSSFNNRKTSILWDAAANKANFALPQSVIAEKSTSNNLLDNRTIILSQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
            LKNISEGKQTSN TSSDDAACMTSE  M  L KGVGN ANET+ RA V+VVC K+EDL 
Sbjct: 121 HLKNISEGKQTSNRTSSDDAACMTSEVQM-TLDKGVGNFANETLSRADVAVVCFKEEDLL 180

Query: 181 ATG-VDITDAGNIPVNEVLTVGKND 205
           ATG VDIT+AGNI V+EVLT+GKND
Sbjct: 181 ATGEVDITNAGNILVDEVLTIGKND 204

[Close]

BLAST of CmaCh14G017810 vs. ExPASy TrEMBL
Match: A0A1S3AWD2 (uncharacterized protein LOC103483642 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483642 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.2e-85
Identity = 171/205 (83.41%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLG+TDQ IQGRLTN+ GVGANAGSMVDVKYVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGYTDQYIQGRLTNRSGVGANAGSMVDVKYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           HKGLSLRCA+SSFNNRKT ILWDAAAN ASF LP+SVIA KSTS+NLLDNRTI +SQAES
Sbjct: 61  HKGLSLRCADSSFNNRKTSILWDAAANKASFALPQSVIAEKSTSDNLLDNRTIVLSQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
            LKNISEGKQTSN+TSSDDAACMTSE  M  L KGVGN ANET+  A V+VVC K+EDL 
Sbjct: 121 HLKNISEGKQTSNSTSSDDAACMTSEVQM-TLDKGVGNFANETLSNADVAVVCFKEEDLP 180

Query: 181 ATG-VDITDAGNIPVNEVLTVGKND 205
           ATG VDIT+AGNI V+EVLT+GKND
Sbjct: 181 ATGEVDITNAGNILVDEVLTIGKND 204

[Close]

BLAST of CmaCh14G017810 vs. ExPASy TrEMBL
Match: A0A1S3AXD8 (uncharacterized protein LOC103483642 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483642 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.2e-85
Identity = 171/205 (83.41%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLG+TDQ IQGRLTN+ GVGANAGSMVDVKYVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGYTDQYIQGRLTNRSGVGANAGSMVDVKYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           HKGLSLRCA+SSFNNRKT ILWDAAAN ASF LP+SVIA KSTS+NLLDNRTI +SQAES
Sbjct: 61  HKGLSLRCADSSFNNRKTSILWDAAANKASFALPQSVIAEKSTSDNLLDNRTIVLSQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
            LKNISEGKQTSN+TSSDDAACMTSE  M  L KGVGN ANET+  A V+VVC K+EDL 
Sbjct: 121 HLKNISEGKQTSNSTSSDDAACMTSEVQM-TLDKGVGNFANETLSNADVAVVCFKEEDLP 180

Query: 181 ATG-VDITDAGNIPVNEVLTVGKND 205
           ATG VDIT+AGNI V+EVLT+GKND
Sbjct: 181 ATGEVDITNAGNILVDEVLTIGKND 204

[Close]

BLAST of CmaCh14G017810 vs. ExPASy TrEMBL
Match: A0A5D3D3C2 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001120 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 4.0e-84
Identity = 170/205 (82.93%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLG+TDQ IQGRLTN+ GVGANAGSMVDVKYVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGYTDQYIQGRLTNRSGVGANAGSMVDVKYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           HKGLSLRCA+SS NNRKT ILWDAAAN ASF LP+SVIA KSTS+NLL+NRTI +SQAES
Sbjct: 61  HKGLSLRCADSSLNNRKTSILWDAAANKASFALPQSVIAEKSTSDNLLNNRTIVLSQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
            LKNISEGKQTSN TSSDDAACMTSE  M  L KGVGN ANET+ RA V+VVC K+EDL 
Sbjct: 121 HLKNISEGKQTSNRTSSDDAACMTSEVQM-TLDKGVGNFANETLSRADVAVVCFKEEDLP 180

Query: 181 ATG-VDITDAGNIPVNEVLTVGKND 205
           ATG VDIT+AGNI V+EVLT+GKND
Sbjct: 181 ATGEVDITNAGNILVDEVLTIGKND 204

[Close]

BLAST of CmaCh14G017810 vs. NCBI nr
Match: XP_022924454.1 (uncharacterized protein LOC111431954 isoform X1 [Cucurbita moschata] >XP_022924455.1 uncharacterized protein LOC111431954 isoform X1 [Cucurbita moschata] >XP_022924456.1 uncharacterized protein LOC111431954 isoform X1 [Cucurbita moschata] >XP_022924457.1 uncharacterized protein LOC111431954 isoform X1 [Cucurbita moschata])

HSP 1 Score: 398.3 bits (1022), Expect = 4.1e-107
Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDV+YVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVEYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES
Sbjct: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
           QLKNISEGKQTSNNTSSDDAACMTSEAHMHKL+KGVGNLANETVCRAAVSVVCSKQEDLQ
Sbjct: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLQKGVGNLANETVCRAAVSVVCSKQEDLQ 180

Query: 181 ATGVDITDAGNIPVNEVLTVGKND 205
           ATG DITDAGNIPVNEVLTVGKND
Sbjct: 181 ATGADITDAGNIPVNEVLTVGKND 204

[Close]

BLAST of CmaCh14G017810 vs. NCBI nr
Match: XP_023528319.1 (uncharacterized protein LOC111791275 [Cucurbita pepo subsp. pepo] >XP_023528321.1 uncharacterized protein LOC111791275 [Cucurbita pepo subsp. pepo] >XP_023528322.1 uncharacterized protein LOC111791275 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 2.0e-106
Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           H+GLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES
Sbjct: 61  HEGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
           QLKNISEGKQTSNNTSSDDAACMTSEAHMHKL+KGVGNLANETVCRAAVSVVCSKQEDLQ
Sbjct: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLQKGVGNLANETVCRAAVSVVCSKQEDLQ 180

Query: 181 ATGVDITDAGNIPVNEVLTVGKND 205
           ATGVDITDAGNI VNEVLTVGKND
Sbjct: 181 ATGVDITDAGNILVNEVLTVGKND 204

[Close]

BLAST of CmaCh14G017810 vs. NCBI nr
Match: KAG7018767.1 (hypothetical protein SDJN02_20640, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 388.7 bits (997), Expect = 3.2e-104
Identity = 198/205 (96.59%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLGHTDQ IQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP
Sbjct: 30  MNEDYKSIEPGTDLGLGLGHTDQRIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 89

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           H+GLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES
Sbjct: 90  HEGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 149

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
           QLKNISEGKQTSNNTSSDDAACMTSEAHMHKL+KG+GNLANETV RAAVSVVCSKQEDLQ
Sbjct: 150 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLQKGMGNLANETVSRAAVSVVCSKQEDLQ 209

Query: 181 ATGVDITDAGNIPVNEVLTVGKNDW 206
           ATGVDITDAGNIPVNEV TVGKND+
Sbjct: 210 ATGVDITDAGNIPVNEVSTVGKNDF 234

[Close]

BLAST of CmaCh14G017810 vs. NCBI nr
Match: KAG6582356.1 (hypothetical protein SDJN03_22358, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387.5 bits (994), Expect = 7.2e-104
Identity = 197/205 (96.10%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLGHTDQ IQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGHTDQRIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           H+GLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES
Sbjct: 61  HEGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
           QLKNISEGKQTSNNTSSDDAACMTSEAHMHKL+KG+GNLANETV RAAVSVVCSKQ+DLQ
Sbjct: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLQKGMGNLANETVSRAAVSVVCSKQDDLQ 180

Query: 181 ATGVDITDAGNIPVNEVLTVGKNDW 206
           ATGVDITDAGNIPVNEV TVGKND+
Sbjct: 181 ATGVDITDAGNIPVNEVSTVGKNDF 205

[Close]

BLAST of CmaCh14G017810 vs. NCBI nr
Match: KGN56909.1 (hypothetical protein Csa_010176 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 4.4e-85
Identity = 172/205 (83.90%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 1   MNEDYKSIEPGTDLGLGLGHTDQCIQGRLTNKLGVGANAGSMVDVKYVTTDSLSELVWSP 60
           MNEDYKSIEPGTDLGLGLG+TDQ IQGRLTN+ GVGANAGSMVDVKYVTTDSLSELVWSP
Sbjct: 1   MNEDYKSIEPGTDLGLGLGYTDQYIQGRLTNRSGVGANAGSMVDVKYVTTDSLSELVWSP 60

Query: 61  HKGLSLRCANSSFNNRKTPILWDAAANNASFVLPRSVIAGKSTSNNLLDNRTITISQAES 120
           HKGLSLRCA+SSFNNRKT ILWDAAAN A+F LP+SVIA KSTSNNLLDNRTI +SQAES
Sbjct: 61  HKGLSLRCADSSFNNRKTSILWDAAANKANFALPQSVIAEKSTSNNLLDNRTIILSQAES 120

Query: 121 QLKNISEGKQTSNNTSSDDAACMTSEAHMHKLKKGVGNLANETVCRAAVSVVCSKQEDLQ 180
            LKNISEGKQTSN TSSDDAACMTSE  M  L KGVGN ANET+ RA V+VVC K+EDL 
Sbjct: 121 HLKNISEGKQTSNRTSSDDAACMTSEVQM-TLDKGVGNFANETLSRADVAVVCFKEEDLL 180

Query: 181 ATG-VDITDAGNIPVNEVLTVGKND 205
           ATG VDIT+AGNI V+EVLT+GKND
Sbjct: 181 ATGEVDITNAGNILVDEVLTIGKND 204

[Close]

BLAST of CmaCh14G017810 vs. TAIR 10
Match: AT5G43630.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 42.0 bits (97), Expect = 6.9e-04
Identity = 33/132 (25.00%), Postives = 60/132 (45.45%), Query Frame = 0


Query: 34  GVGANAGSMVDVKYVTTDSLSELVWSPHKGLSLRCANSSFNNRK---TPILWD------A 93
           G    A +   +K+   D+++ELVWSP  GLSLRCA+ SF  +    +P  +D      A
Sbjct: 24  GTAGAANAEARMKFAAVDAITELVWSPSNGLSLRCADISFTGKAKLLSPNFFDIGLTNMA 83

Query: 94  AANNASFVLPRSVIAGKSTSNNLLDNRTITISQAESQLKNISEGK-QTSNNTSSDDAACM 153
             +N++ +  +         N    N+ +     E     + E K +T+++  +++A C 
Sbjct: 84  IHSNSTSIEDQEDHVDVELRNRDQVNQAMIGGSVEDMKPEMVEDKVETNDDIKNEEAGCS 143

Query: 154 TSEAHMHKLKKG 156
              +   K  +G
Sbjct: 144 KRSSDSPKAMEG 155

The following BLAST results are available for this feature:

BLAST of CmaCh14G017810 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G017810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E903	2.0e-107	98.53	uncharacterized protein LOC111431954 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0L7A1	2.1e-85	83.90	Plus3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G143500 PE=4 ...	[more]
A0A1S3AWD2	6.2e-85	83.41	uncharacterized protein LOC103483642 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3AXD8	6.2e-85	83.41	uncharacterized protein LOC103483642 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3D3C2	4.0e-84	82.93	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]

BLAST of CmaCh14G017810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924454.1	4.1e-107	98.53	uncharacterized protein LOC111431954 isoform X1 [Cucurbita moschata] >XP_0229244...	[more]
XP_023528319.1	2.0e-106	98.53	uncharacterized protein LOC111791275 [Cucurbita pepo subsp. pepo] >XP_023528321....	[more]
KAG7018767.1	3.2e-104	96.59	hypothetical protein SDJN02_20640, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6582356.1	7.2e-104	96.10	hypothetical protein SDJN03_22358, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56909.1	4.4e-85	83.90	hypothetical protein Csa_010176 [Cucumis sativus]	[more]

BLAST of CmaCh14G017810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43630.1	6.9e-04	25.00	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38940	FAMILY NOT NAMED	coord: 1..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G017810.1	CmaCh14G017810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016593	Cdc73/Paf1 complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:1990269	RNA polymerase II C-terminal domain phosphoserine binding
molecular_function	GO:0008270	zinc ion binding