CmaCh14G017690 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G017690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 12844355 .. 12846838 (-)
RNA-Seq ExpressionCmaCh14G017690
SyntenyCmaCh14G017690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGCCTCTTCATTGGGTCCTTCTGCAAGCAACTAACAGCCAAATTCATCACATCCATCACACTCTCCATTGGACACGATTGCTCGAAAAGAGCTTCATCAACCCAACTCCTCAACCCTTCCAACTTCTCCTTTTCCTTCCCTTCTGAAAGTCCAGTACTGGCTCTCATCCATAGAACCCCTCCTTCGTCGTCAATGGCCTCCCTCCCAAAGATCAGCTCGAGCAGAACAACCCCGAACGAGAAGATGTCCATTTTTGCCGACACCACTCCATCCGCTATGTATTCAGGTGCTATATAGCCTTGAGTTCCAACAATGTGCATGGTTATGGCATTGTACCCCGACTTTGCCTGCCCAAAGTTGGCTATCTTAGCCCTCATGCTTGCATCCAACAGAATGTTGCTGCTTTTTATGTCTTTGTGCACGACTTGTGGCCTCGTGTGCTCGTGGATGTACAATAGCCCGTTAGCGACATCAATGGCAATCCTCAATCTCATTCTCCAGTTCAGCTTCTGCATTTGGCTTCCGTGTAGCCATGAATAAAGAGAACCATTCTCTAAATGTTCATAAATTAGGTAGCAGGTTGCATCTTCAGGGTCGATGCAAAACCCTTCGAGCTTCACTAGATTACCATGGTTTATCTGCAATCAAAATAACCAAATTCAAACAATTAGCTAAAGTTAAGGGTCCACTTTTTCACGTCTGAAATGGTGATAATGTTACTAATGTTACCTTCTGCAAGATCTTGAGCTGTTCATAGGCATTCCACTTCATCTTCTTGATAGTGTACTCAACTCCGCCGATGCTCCCCTTATAAACCGACCCTTGAATTAAGCTACTCTCGCTGAGCCCATCTGTCGCCTCATTCAGCTCCTCAATTTTGAACACTCTGTATTTATCCAAACAATCCGACATATCCGCCATTAAATCCACCTCCATTTGCTTCCCTTGCTCCTTCCCCATCCAAACCCCAATGTCCTGCACTCAGTGTTTCTCAACTCCCTCCTCCATTTCCCTTTCCTTACTCCTCCTCTTCCCCACTCCACAAACCCACAAACCCACCACCACGATCAGCAGAAACCCCACAATCCCAATCCCAATGGCCAGCCCTGTCACTGCTCTGTTTCTCCCCTCCACCACTGGGACCGGGGTCTGCTCTGGAGACGGCGACACCACAATGGGCTGCGTCAAATTGGGCAGACGACTCACCGGGATGAAAATCGTCTCGAACGGCTCCGGGTTGGGCCGATTCGCGTCTGCGATATCCGACGTCTCTACCCCAAATCTCGAAGCTATCGAAGGCAGAGTATCGGTGGGCTGAATCATGAAGTTGACGCGATTTTGGGATTGGGTGTGAGTAGGACACTTGCAAAAGATGGGGAAAACGACGCCGACGCCGATGGGGAGATCGACCGCGACGAGAGTGGGATTGACGACTTCGACAGATTGGTAAGTGGTAAGATTCTGAAACTTAAAGGTGGAGACTTGCCACAAGTTATCGCCGTGGTTGATTTTGTAGGAGAGATTAGCATAAGAGATGCTGACTTGTTTGATTAATCCACACAGTGCTAAGGTTGTCTTATTTATAATCAAATAAATTATAAGGATATAGAAATAGTAATAAATGGAAATAACAATAAATAGAAAGATACCTATGATAATAAGACAAATATTAGATATTTGCCTTATAATAAAATATCAAATATAATATATATGGTAAACTATAATTTATTACTAAATATCCTTAACAGACAGAAGAATTGACGGACTTGCAAAAGCAGTTAATAGGAATGAAGAATGGCTGGCCGGAGAGGAGAGGGAAAGTGGCGTTGGAGTCGGAGATATTGCTTGGGCGGGAAATTTGGAGGCGGCTAACCCAGAAGAGGTCAGCAATGGTAGCCAAGTCGAGGAAACCGGGGGCGGCGGCTCGGTAGAAGACGTAGGCCTGACATGGGTTGGCAGTGTGGTTGGTGGAGCAGGTGTAGCCGTCGGCGTCGGGGGGTTGAGCAGCGGAGTTATGGAAGAAGAAGATGAAGAAGAAAATGAAGAGTGCAGAGGAGGTAAGGGTATGGCGGATTGGGGGTTCCATTTTTGTTGTAGATTGTTTTGGTTGATTTGCAATGTGTATTAATAGTCAAAATGATTTTCATTTTTCTCCCGTGGAGGAAACGTTTCTCCAATCCACTTAATATAAACAGTAGCATTGGAAATTTTGCAACAAGATTTCTTCCCACTCATACCCATGCCCCCATTAATTTGAGTGCGTGTTAAGTCAAGTCAAGTCAAGCCAAGTCAAGTGTCCGTAGTTTCTCCGTCAATGAAGTCCAAAACGGGGAGGGAAGAAGAAGAAGAAGAAGAAGACCAGAGGCAGAGGGCCATTTTTTTGGAGTTGTGGTCGATGAAGTCCAAAACCAAAAGTACACCTCGTATAGCACCATGACCAATTCAAAATTGCCACGTACCTCCAAATCTGTTGCTTAA

mRNA sequence

ATGCTCGGCCTCTTCATTGGGTCCTTCTGCAAGCAACTAACAGCCAAATTCATCACATCCATCACACTCTCCATTGGACACGATTGCTCGAAAAGAGCTTCATCAACCCAACTCCTCAACCCTTCCAACTTCTCCTTTTCCTTCCCTTCTGAAAGTCCAGTACTGGCTCTCATCCATAGAACCCCTCCTTCGTCGTCAATGGCCTCCCTCCCAAAGATCAGCTCGAGCAGAACAACCCCGAACGAGAAGATGTCCATTTTTGCCGACACCACTCCATCCGCTATGTATTCAGTGTTTCTCAACTCCCTCCTCCATTTCCCTTTCCTTACTCCTCCTCTTCCCCACTCCACAAACCCACAAACCCACCACCACGATCAGCAGAAACCCCACAATCCCAATCCCAATGGCCAGCCCTGTCACTGCTCTGTTTCTCCCCTCCACCACTGGGACCGGGGTCTGCTCTGGAGACGGCGACACCACAATGGGCTGCGTCAAATTGGGCAGACGACTCACCGGGATGAAAATCGTCTCGAACGGCTCCGGGTTGGGCCGATTCGCGTCTGCGATATCCGACGTCTCTACCCCAAATCTCGAAGCTATCGAAGGCAGAGTATCGGTGGGCTGAATCATGAAGTTGACGCGATTTTGGGATTGGGTGTGAGTAGGACACTTGCAAAAGATGGGGAAAACGACGCCGACGCCGATGGGGAGATCGACCGCGACGAGAGTGGGATTGACGACTTCGACAGATTGGCGGCTAACCCAGAAGAGGTCAGCAATGGTAGCCAAGTCGAGGAAACCGGGGGCGGCGGCTCGGTAGAAGACGTAGGCCTGACATGGGTTGGCAGTGTGGTTGGTGGAGCAGGTGTAGCCGTCGGCGTCGGGGGGTTGAGCAGCGGAGTTATGGAAGAAGAAGATGAAGAAGAAAATGAAGAGTGCAGAGGAGTCAAGTCAAGTCAAGCCAAGTCAAGTGTCCGTAGTTTCTCCGTCAATGAAGTCCAAAACGGGGAGGGAAGAAGAAGAAGAAGAAGAAGACCAGAGGCAGAGGGCCATTTTTTTGGAGTTGTGGTCGATGAAGTCCAAAACCAAAAGTACACCTCGTATAGCACCATGACCAATTCAAAATTGCCACGTACCTCCAAATCTGTTGCTTAA

Coding sequence (CDS)

ATGCTCGGCCTCTTCATTGGGTCCTTCTGCAAGCAACTAACAGCCAAATTCATCACATCCATCACACTCTCCATTGGACACGATTGCTCGAAAAGAGCTTCATCAACCCAACTCCTCAACCCTTCCAACTTCTCCTTTTCCTTCCCTTCTGAAAGTCCAGTACTGGCTCTCATCCATAGAACCCCTCCTTCGTCGTCAATGGCCTCCCTCCCAAAGATCAGCTCGAGCAGAACAACCCCGAACGAGAAGATGTCCATTTTTGCCGACACCACTCCATCCGCTATGTATTCAGTGTTTCTCAACTCCCTCCTCCATTTCCCTTTCCTTACTCCTCCTCTTCCCCACTCCACAAACCCACAAACCCACCACCACGATCAGCAGAAACCCCACAATCCCAATCCCAATGGCCAGCCCTGTCACTGCTCTGTTTCTCCCCTCCACCACTGGGACCGGGGTCTGCTCTGGAGACGGCGACACCACAATGGGCTGCGTCAAATTGGGCAGACGACTCACCGGGATGAAAATCGTCTCGAACGGCTCCGGGTTGGGCCGATTCGCGTCTGCGATATCCGACGTCTCTACCCCAAATCTCGAAGCTATCGAAGGCAGAGTATCGGTGGGCTGAATCATGAAGTTGACGCGATTTTGGGATTGGGTGTGAGTAGGACACTTGCAAAAGATGGGGAAAACGACGCCGACGCCGATGGGGAGATCGACCGCGACGAGAGTGGGATTGACGACTTCGACAGATTGGCGGCTAACCCAGAAGAGGTCAGCAATGGTAGCCAAGTCGAGGAAACCGGGGGCGGCGGCTCGGTAGAAGACGTAGGCCTGACATGGGTTGGCAGTGTGGTTGGTGGAGCAGGTGTAGCCGTCGGCGTCGGGGGGTTGAGCAGCGGAGTTATGGAAGAAGAAGATGAAGAAGAAAATGAAGAGTGCAGAGGAGTCAAGTCAAGTCAAGCCAAGTCAAGTGTCCGTAGTTTCTCCGTCAATGAAGTCCAAAACGGGGAGGGAAGAAGAAGAAGAAGAAGAAGACCAGAGGCAGAGGGCCATTTTTTTGGAGTTGTGGTCGATGAAGTCCAAAACCAAAAGTACACCTCGTATAGCACCATGACCAATTCAAAATTGCCACGTACCTCCAAATCTGTTGCTTAA

Protein sequence

MLGLFIGSFCKQLTAKFITSITLSIGHDCSKRASSTQLLNPSNFSFSFPSESPVLALIHRTPPSSSMASLPKISSSRTTPNEKMSIFADTTPSAMYSVFLNSLLHFPFLTPPLPHSTNPQTHHHDQQKPHNPNPNGQPCHCSVSPLHHWDRGLLWRRRHHNGLRQIGQTTHRDENRLERLRVGPIRVCDIRRLYPKSRSYRRQSIGGLNHEVDAILGLGVSRTLAKDGENDADADGEIDRDESGIDDFDRLAANPEEVSNGSQVEETGGGGSVEDVGLTWVGSVVGGAGVAVGVGGLSSGVMEEEDEEENEECRGVKSSQAKSSVRSFSVNEVQNGEGRRRRRRRPEAEGHFFGVVVDEVQNQKYTSYSTMTNSKLPRTSKSVA
Homology
[Close]
BLAST of CmaCh14G017690 vs. NCBI nr
Match: KAF7806979.1 (Protein LYK5 [Senna tora])

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-04
Identity = 60/164 (36.59%), Postives = 77/164 (46.95%), Query Frame = 0 

Query: 116 STNPQTHHHDQQKPHNPNPNGQPCHCSVSPLHHWDRGLLWRR---RHHNGLR--QIGQTT 175
           S NP      QQ+P++P P  Q  H    P+    R    RR   R   G+R  Q  Q+ 
Sbjct: 89  SVNPNPTDQHQQQPNDPQPYRQSPH-RPRPIIGVSRRRSGRRRSGRRRRGIRLVQHRQSR 148

Query: 176 HRDENRLERLRVGPIRVCDIRRLYPKSRSYRRQSIGGLN----HEVDAILGLGVSRTLAK 235
           H +ENR+E   +  IRV    R   + RS R   I  LN    H V A+  L + R LA+
Sbjct: 149 HGNENRVEFAEIRAIRVGYSLRCRSEHRSDRGYVIRRLNDIGDHVVHAVSTLRLVRALAE 208

Query: 236 DGENDADADGEIDRDESGIDDFDRLAANPEEVSNGSQVEETGGG 271
             E+D DAD +I RDES + DFD L         G +V E  GG
Sbjct: 209 HREDDVDADRQIRRDESRVHDFDGLI--------GREVLELVGG 243

The following BLAST results are available for this feature:
BLAST of CmaCh14G017690 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G017690 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G017690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7806979.19.3e-0436.59Protein LYK5 [Senna tora][more]
BLAST of CmaCh14G017690 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..334
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..384
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 335..350
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..350

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G017690.1CmaCh14G017690.1mRNA