CmaCh14G017580 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G017580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSerine-aspartate repeat-containing protein F isoform X1
LocationCma_Chr14: 12817461 .. 12818084 (+)
RNA-Seq ExpressionCmaCh14G017580
SyntenyCmaCh14G017580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGAAGAAAAAATGGTGATCTAATAGAGCCAAGGCCATGCCATGAATATACAATGCCAGATGCCAAAAAAGTTGATACTAAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCAACAGAAGAATCTATGCAAGTTCCTGAGAGTGAAGACAGATTCACGGATCCCAATTAAGAGAAAACATTTGGGACCTGAAACAGTCGTTGAAGACAATATTGCAACTCAATTTAAGATTTAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGGAACAATGCAGAAGAAATTGAAATTTCTCCTGGGTTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTCATATTTATCTATTGGAGATTGCAAGCATAAGAACGTGGAGATGGGAAAGACGACGGGAATTTCAACAAACAATGGACATGAAGCGGAACGACAAGAACCAGATGAAAGCCTATTTGAATCACCAGTTCCATTCCCCACATTCGGAGGAGAAAATCAAGAATCACCACGAAGAACGAGCAAGGAATGA

mRNA sequence

ATGTGGAGAAGAAAAAATGGTGATCTAATAGAGCCAAGGCCATGCCATGAATATACAATGCCAGATGCCAAAAAAGTTGATACTAAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCAACAGAAGAATCTATGCAAGTTCCTGAGAATTTAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGGAACAATGCAGAAGAAATTGAAATTTCTCCTGGGTTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTCATATTTATCTATTGGAGATTGCAAGCATAAGAACGTGGAGATGGGAAAGACGACGGGAATTTCAACAAACAATGGACATGAAGCGGAACGACAAGAACCAGATGAAAGCCTATTTGAATCACCAGTTCCATTCCCCACATTCGGAGGAGAAAATCAAGAATCACCACGAAGAACGAGCAAGGAATGA

Coding sequence (CDS)

ATGTGGAGAAGAAAAAATGGTGATCTAATAGAGCCAAGGCCATGCCATGAATATACAATGCCAGATGCCAAAAAAGTTGATACTAAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCAACAGAAGAATCTATGCAAGTTCCTGAGAATTTAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGGAACAATGCAGAAGAAATTGAAATTTCTCCTGGGTTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTCATATTTATCTATTGGAGATTGCAAGCATAAGAACGTGGAGATGGGAAAGACGACGGGAATTTCAACAAACAATGGACATGAAGCGGAACGACAAGAACCAGATGAAAGCCTATTTGAATCACCAGTTCCATTCCCCACATTCGGAGGAGAAAATCAAGAATCACCACGAAGAACGAGCAAGGAATGA

Protein sequence

MWRRKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSSCLPTEESMQVPENLNAIQVEFNTIGSHSRNNAEEIEISPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEAERQEPDESLFESPVPFPTFGGENQESPRRTSKE
Homology
BLAST of CmaCh14G017580 vs. ExPASy TrEMBL
Match: A0A0A0L8I8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144220 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.3e-43
Identity = 109/210 (51.90%), Postives = 128/210 (60.95%), Query Frame = 0

Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSSCLPTEE---------SMQVP 63
           +K GDL+EPR CH YT+P AK VDTKDK   T+L  HN+SC   EE         S+Q+P
Sbjct: 383 KKKGDLVEPRQCHGYTVPAAKNVDTKDKGTVTDLTCHNTSCSLAEECLVIESPNSSVQIP 442

Query: 64  E---------------------NL-------NAIQVEFNTIGSHSRNNAEEIEISPGFVA 123
           E                     N+       N ++ EFNT  SHS NNAEE E+SP FV 
Sbjct: 443 EVENKEEFQLREHLGTETVDEDNIPTQSKISNEVEEEFNTTESHSENNAEEAEVSPEFVT 502

Query: 124 KNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEAE 177
           +N+  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +STNN HE E
Sbjct: 503 ENR--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTNNEHEVE 562

BLAST of CmaCh14G017580 vs. ExPASy TrEMBL
Match: A0A5D3D317 (Serine-aspartate repeat-containing protein F isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00870 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.3e-42
Identity = 111/211 (52.61%), Postives = 128/211 (60.66%), Query Frame = 0

Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSS------CLPTE---ESMQVP 63
           +K GDL+EPR CH YT P AK VDTKDK   T++I HN+S      CL  E    S+QVP
Sbjct: 425 KKKGDLVEPRQCHGYTAPAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVP 484

Query: 64  E----------------------NL-------NAIQVEFNTIGSHSRNNAEEIEISPGFV 123
           E                      N+       N +Q EFNT  SHS  NAEE E+SP FV
Sbjct: 485 EVEDKVEFQLREERLGTETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFV 544

Query: 124 AKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEA 177
           A+NK  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +STNN HEA
Sbjct: 545 AENK--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTEVSTNNEHEA 604

BLAST of CmaCh14G017580 vs. ExPASy TrEMBL
Match: A0A1S4DSH5 (serine-aspartate repeat-containing protein F isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483664 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.6e-42
Identity = 111/211 (52.61%), Postives = 128/211 (60.66%), Query Frame = 0

Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSS------CLPTE---ESMQVP 63
           +K GDL+EPR CH YT P AK VDTKDK   T++I HN+S      CL  E    S+QVP
Sbjct: 383 KKKGDLVEPRQCHGYTAPAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVP 442

Query: 64  E----------------------NL-------NAIQVEFNTIGSHSRNNAEEIEISPGFV 123
           E                      N+       N +Q EFNT  SHS  NAEE E+SP FV
Sbjct: 443 EVEDKVEFQLREERLGTETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFV 502

Query: 124 AKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEA 177
           A+NK  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +ST+N HEA
Sbjct: 503 AENK--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEA 562

BLAST of CmaCh14G017580 vs. ExPASy TrEMBL
Match: A0A1S3AXG5 (serine-aspartate repeat-containing protein F isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483664 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.6e-42
Identity = 111/211 (52.61%), Postives = 128/211 (60.66%), Query Frame = 0

Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSS------CLPTE---ESMQVP 63
           +K GDL+EPR CH YT P AK VDTKDK   T++I HN+S      CL  E    S+QVP
Sbjct: 358 KKKGDLVEPRQCHGYTAPAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVP 417

Query: 64  E----------------------NL-------NAIQVEFNTIGSHSRNNAEEIEISPGFV 123
           E                      N+       N +Q EFNT  SHS  NAEE E+SP FV
Sbjct: 418 EVEDKVEFQLREERLGTETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFV 477

Query: 124 AKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEA 177
           A+NK  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +ST+N HEA
Sbjct: 478 AENK--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEA 537

BLAST of CmaCh14G017580 vs. ExPASy TrEMBL
Match: A0A1S3AXG7 (serine-aspartate repeat-containing protein F isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483664 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.6e-42
Identity = 111/211 (52.61%), Postives = 128/211 (60.66%), Query Frame = 0

Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSS------CLPTE---ESMQVP 63
           +K GDL+EPR CH YT P AK VDTKDK   T++I HN+S      CL  E    S+QVP
Sbjct: 276 KKKGDLVEPRQCHGYTAPAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVP 335

Query: 64  E----------------------NL-------NAIQVEFNTIGSHSRNNAEEIEISPGFV 123
           E                      N+       N +Q EFNT  SHS  NAEE E+SP FV
Sbjct: 336 EVEDKVEFQLREERLGTETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFV 395

Query: 124 AKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEA 177
           A+NK  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +ST+N HEA
Sbjct: 396 AENK--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEA 455

BLAST of CmaCh14G017580 vs. NCBI nr
Match: KAG7018750.1 (hypothetical protein SDJN02_20623, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-57
Identity = 121/156 (77.56%), Postives = 127/156 (81.41%), Query Frame = 0

Query: 20  MPDAKKVDTKDKEPATELIRHNSSCLPTEESMQ----------------VPENL------ 79
           MPDAKKVDT+DKEPATELIRHNSSCLP EESMQ                + +N+      
Sbjct: 1   MPDAKKVDTQDKEPATELIRHNSSCLPPEESMQIHGFQLREEHLGTETVIEDNIATQFKI 60

Query: 80  -NAIQVEFNTIGSHSRNNAEEIEISPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDT 139
            NAIQVEFNTIGSHSR NAEEIE+SPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDT
Sbjct: 61  SNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDT 120

Query: 140 SYLSIGDCKHKNVEMGKTTGISTNNGHEAERQEPDE 153
            YLSIGDCKHKN E+GKTTGISTNN HEAERQEPDE
Sbjct: 121 LYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDE 156

BLAST of CmaCh14G017580 vs. NCBI nr
Match: XP_038881451.1 (uncharacterized protein LOC120072973 [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 3.8e-45
Identity = 114/217 (52.53%), Postives = 134/217 (61.75%), Query Frame = 0

Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSSCLPTEES---------MQVP 63
           +K GDL+EPRPCH YT+P AK VDTKD+  A +LI HNSSC   EES         MQVP
Sbjct: 276 KKKGDLVEPRPCHGYTIPAAKNVDTKDEGTAIDLICHNSSCSLAEESLVIESPKSFMQVP 335

Query: 64  E---------------------------NL-------NAIQVEFNTIGSHSRNNAEEIEI 123
           E                           N+       N +Q EFNTIGSHS N+AE+ E+
Sbjct: 336 EVEERCTVLKEEFQLREEHLGTETVVQDNIPTQSKISNGVQGEFNTIGSHSENSAEKTEV 395

Query: 124 SPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTN 177
            P FVAK+KN+ EAPGEDCED DGEYLEISEQG D S LSIGD KHK+ + G+TT +STN
Sbjct: 396 FPEFVAKSKNEKEAPGEDCEDSDGEYLEISEQGTDISNLSIGDYKHKHEDKGETTEVSTN 455

BLAST of CmaCh14G017580 vs. NCBI nr
Match: XP_031738160.1 (uncharacterized protein LOC105434833 isoform X2 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.7e-43
Identity = 109/210 (51.90%), Postives = 128/210 (60.95%), Query Frame = 0

Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSSCLPTEE---------SMQVP 63
           +K GDL+EPR CH YT+P AK VDTKDK   T+L  HN+SC   EE         S+Q+P
Sbjct: 285 KKKGDLVEPRQCHGYTVPAAKNVDTKDKGTVTDLTCHNTSCSLAEECLVIESPNSSVQIP 344

Query: 64  E---------------------NL-------NAIQVEFNTIGSHSRNNAEEIEISPGFVA 123
           E                     N+       N ++ EFNT  SHS NNAEE E+SP FV 
Sbjct: 345 EVENKEEFQLREHLGTETVDEDNIPTQSKISNEVEEEFNTTESHSENNAEEAEVSPEFVT 404

Query: 124 KNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEAE 177
           +N+  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +STNN HE E
Sbjct: 405 ENR--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTNNEHEVE 464

BLAST of CmaCh14G017580 vs. NCBI nr
Match: XP_011650954.1 (myb-like protein X isoform X1 [Cucumis sativus] >XP_031738159.1 myb-like protein X isoform X1 [Cucumis sativus] >KGN56932.1 hypothetical protein Csa_010537 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.7e-43
Identity = 109/210 (51.90%), Postives = 128/210 (60.95%), Query Frame = 0

Query: 4   RKNGDLIEPRPCHEYTMPDAKKVDTKDKEPATELIRHNSSCLPTEE---------SMQVP 63
           +K GDL+EPR CH YT+P AK VDTKDK   T+L  HN+SC   EE         S+Q+P
Sbjct: 383 KKKGDLVEPRQCHGYTVPAAKNVDTKDKGTVTDLTCHNTSCSLAEECLVIESPNSSVQIP 442

Query: 64  E---------------------NL-------NAIQVEFNTIGSHSRNNAEEIEISPGFVA 123
           E                     N+       N ++ EFNT  SHS NNAEE E+SP FV 
Sbjct: 443 EVENKEEFQLREHLGTETVDEDNIPTQSKISNEVEEEFNTTESHSENNAEEAEVSPEFVT 502

Query: 124 KNKNQNEAPGEDCEDPDGEYLEISEQGMDTSYLSIGDCKHKNVEMGKTTGISTNNGHEAE 177
           +N+  NEAP EDCED DGEYLEISEQGMD   LSIGDCKHKN EMG+TT +STNN HE E
Sbjct: 503 ENR--NEAPVEDCEDSDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTNNEHEVE 562

BLAST of CmaCh14G017580 vs. NCBI nr
Match: KAG6582338.1 (ATP sulfurylase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.6 bits (462), Expect = 3.0e-42
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 0

Query: 58  NAIQVEFNTIGSHSRNNAEEIEISPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDTS 117
           NAIQVEFNTIGSHSR NAEEIE+SPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDT 
Sbjct: 645 NAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDTL 704

Query: 118 YLSIGDCKHKNVEMGKTTGISTNNGHEAERQEPDE 153
           YLSIGDCKHKN E+GKTTGISTNN HEAERQEPDE
Sbjct: 705 YLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDE 739

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8I81.3e-4351.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144220 PE=4 SV=1[more]
A0A5D3D3173.3e-4252.61Serine-aspartate repeat-containing protein F isoform X1 OS=Cucumis melo var. mak... [more]
A0A1S4DSH55.6e-4252.61serine-aspartate repeat-containing protein F isoform X1 OS=Cucumis melo OX=3656 ... [more]
A0A1S3AXG55.6e-4252.61serine-aspartate repeat-containing protein F isoform X2 OS=Cucumis melo OX=3656 ... [more]
A0A1S3AXG75.6e-4252.61serine-aspartate repeat-containing protein F isoform X3 OS=Cucumis melo OX=3656 ... [more]
Match NameE-valueIdentityDescription
KAG7018750.17.5e-5777.56hypothetical protein SDJN02_20623, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038881451.13.8e-4552.53uncharacterized protein LOC120072973 [Benincasa hispida][more]
XP_031738160.12.7e-4351.90uncharacterized protein LOC105434833 isoform X2 [Cucumis sativus][more]
XP_011650954.12.7e-4351.90myb-like protein X isoform X1 [Cucumis sativus] >XP_031738159.1 myb-like protein... [more]
KAG6582338.13.0e-4293.68ATP sulfurylase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G017580.1CmaCh14G017580.1mRNA