CmaCh14G016580 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G016580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 12410978 .. 12411712 (-)
RNA-Seq ExpressionCmaCh14G016580
SyntenyCmaCh14G016580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAACCATGTACATGTAACATGATATGCTAGGAACATCGAAATATCTTTTTCGCAGTGTTTGTTTACTTCTCTCTCTTCTGACCACCGACCCCCTTTCAACCCAGATACGTCTAACTCCTCCTTTTTCTTTTGTTCATTTTTATTTTTTACTTCCATTACATGAGGGGGACCCAGGACAACCACCTGGAGAAAGTTCAAGATTTGATCAACTCTGCTCATTGTCGCCAGAAATCAAAGCAACCATTTTTTTTTTCTATAAAGATGGTGAAAGGAGAGATTAAATTCAACTCAGAAGTGATGAAACATTTCAAAGTTTCTGTTGCACCTGCCAAGGAAAACTTCACCACAGCTAGACTCAAACTGATAAGGTATGAAAAAAGTACTCTCTCACATCATACTTATCCTTTCAGAAACAGTGAGCTTTGTCATACTCAAGAGTCAAGTCCAATTGGAAGTTTTTTCTAAGTTCAGTGGAAGTAGTTGGTTCCCTTTTGGTTTATTTGGAAAATGGAGCTCAACAATACTTCACCATTGTCAACCTTCTTCTCAAGTAATGAAGTAGAGGTTCCTTGTCTTTATGTTATGTTTCTCTCTCTCACTACACTGTTGCTCCTGCTTTTTAGTTGGGCTGTTGGTGGCATCTCCATTGATTCCCACATGACTTGCTGTTGTCTCAAATATCAAAGGGGAAACTTAGCCAATCCCCAGATTATTTAA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAACCATGTACATGTAACATGATATGCTAGGAACATCGAAATATCTTTTTCGCAGTGTTTGTTTACTTCTCTCTCTTCTGACCACCGACCCCCTTTCAACCCAGATACGTCTAACTCCTCCTTTTTCTTTTGTTCATTTTTATTTTTTACTTCCATTACATGAGGGGGACCCAGGACAACCACCTGGAGAAAGTTCAAGATTTGATCAACTCTGCTCATTGTCGCCAGAAATCAAAGCAACCATTTTTTTTTTCTATAAAGATGGTGAAAGGAGAGATTAAATTCAACTCAGAAGTGATGAAACATTTCAAAGTTTCTGTTGCACCTGCCAAGGAAAACTTCACCACAGCTAGACTCAAACTGATAAGTTGGGCTGTTGGTGGCATCTCCATTGATTCCCACATGACTTGCTGTTGTCTCAAATATCAAAGGGGAAACTTAGCCAATCCCCAGATTATTTAA

Coding sequence (CDS)

ATGAGGGGGACCCAGGACAACCACCTGGAGAAAGTTCAAGATTTGATCAACTCTGCTCATTGTCGCCAGAAATCAAAGCAACCATTTTTTTTTTCTATAAAGATGGTGAAAGGAGAGATTAAATTCAACTCAGAAGTGATGAAACATTTCAAAGTTTCTGTTGCACCTGCCAAGGAAAACTTCACCACAGCTAGACTCAAACTGATAAGTTGGGCTGTTGGTGGCATCTCCATTGATTCCCACATGACTTGCTGTTGTCTCAAATATCAAAGGGGAAACTTAGCCAATCCCCAGATTATTTAA

Protein sequence

MRGTQDNHLEKVQDLINSAHCRQKSKQPFFFSIKMVKGEIKFNSEVMKHFKVSVAPAKENFTTARLKLISWAVGGISIDSHMTCCCLKYQRGNLANPQII
Homology
[Close]
BLAST of CmaCh14G016580 vs. ExPASy TrEMBL
Match: A0A0A0L8W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150760 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 45/134 (33.58%), Postives = 52/134 (38.81%), Query Frame = 0 

Query: 20  HCRQKSKQPFF-FSIKMVKGEIKFNSEVMKHFKVSVAPAKENFTTARLK----------- 79
           H RQK KQ FF  + +M+  EIKFNSEVMK  K+ V P KENFTTA L+           
Sbjct: 5   HGRQKPKQAFFNENWEMI--EIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSH 64

Query: 80  -----------------------------------------------------LISWAVG 89
                                                                ++ WAVG
Sbjct: 65  RNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVG 124

[Close]
BLAST of CmaCh14G016580 vs. NCBI nr
Match: KAG6582257.1 (hypothetical protein SDJN03_22259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.1 bits (440), Expect = 6.1e-40
Identity = 88/97 (90.72%), Postives = 90/97 (92.78%), Query Frame = 0 

Query: 4   TQDNHLEKVQDLINSAHCRQKSKQPFFFSIKMVKGEIKFNSEVMKHFKVSVAPAKENFTT 63
           T+DNHLEKVQDLIN AHCRQKSKQP    IKMVKGEIKFNS+VMKHFKVSVAPAKENFTT
Sbjct: 49  TKDNHLEKVQDLINYAHCRQKSKQP----IKMVKGEIKFNSQVMKHFKVSVAPAKENFTT 108

Query: 64  ARLKLISWAVGGISIDSHMTCCCLKYQRGNLANPQII 101
           ARLKLIS AVGGISIDSHMTCCCLK QRGNLANPQII
Sbjct: 109 ARLKLISLAVGGISIDSHMTCCCLKDQRGNLANPQII 141

[Close]
BLAST of CmaCh14G016580 vs. NCBI nr
Match: KGN57047.1 (hypothetical protein Csa_010340 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-04
Identity = 45/134 (33.58%), Postives = 52/134 (38.81%), Query Frame = 0 

Query: 20  HCRQKSKQPFF-FSIKMVKGEIKFNSEVMKHFKVSVAPAKENFTTARLK----------- 79
           H RQK KQ FF  + +M+  EIKFNSEVMK  K+ V P KENFTTA L+           
Sbjct: 5   HGRQKPKQAFFNENWEMI--EIKFNSEVMKFSKLFVVPTKENFTTAGLRQGWYQKSLLSH 64

Query: 80  -----------------------------------------------------LISWAVG 89
                                                                ++ WAVG
Sbjct: 65  RNVLSETESFVILKSQVELEVIFLSSVEVVGSLLVYLEKRSSTILHHCQPYSQVMGWAVG 124

The following BLAST results are available for this feature:
BLAST of CmaCh14G016580 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G016580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8W31.5e-0433.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150760 PE=4 SV=1[more]
BLAST of CmaCh14G016580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6582257.16.1e-4090.72hypothetical protein SDJN03_22259, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57047.13.1e-0433.58hypothetical protein Csa_010340 [Cucumis sativus][more]
BLAST of CmaCh14G016580 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G016580.1CmaCh14G016580.1mRNA