CmaCh14G016250 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G016250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	Cma_Chr14: 12182737 .. 12185255 (-)
RNA-Seq Expression	CmaCh14G016250
Synteny	CmaCh14G016250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCCCTTGGACGAGAAAGAGACCACCGCCGTGTTCGAGAAGCTCCACAAATTCACCGGTAACAACCTCAAGAACATTGTCGAGAACCCCTCTCACGAAGGGCCGGAGCTAAATCCCGGCCGCTACTGCTTCCGCCTTCATAAGAACAAGGTATATTACGTCAGTGACTCCCTTGTTAAGCGAGCTACCAACGTAGCCCGCAGCAACCTTGTCGTTCTCGGCACCTGCATCGGAAAGTTTACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCTTCCAATGCTAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTTGTTGTGTATTCTATGTCGGATGTGCCATTGGGATTTGGAATTGCGGCGAAGTCCACGCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTAAGGATGGAAGATGAGCTTTAAAGAATCAAGATGAAGATGAGTTGAGTTTATTGGGCATCGGCTTCCTGGTCCAGGTATACTCGAGTTTGTTCTTGTAAAGTTTGTTGATCAATAGGATTTTGAGATCAAATTGATAAACTGCCTAATGAATCAAGTCAATTTTGTAAGTTTTCCACACCATGGTGTTGAATTTTGTCGCTTAAGTTTAAAATTTATGTGAATGATGAAACTGTTGCCCAAATGTGGGTTATCTAATATCATAGTGATTAGATAGTGCTTATTTCTTTACTGCAAACTAATCATTTCTTCTTTTTATGACTGTATTGAAGATTTTCTTTAATGAGCAGTTGCTTCTCATTTTTGTATCGGATATTTCTGTTTGCACGTGAGGCCAATACATACATTTGTTTGATCATCAAACAGCTGTGAATTGAGCAACAATGTTCTTCACTAGAAATGAATTTTCTTTGTTGGGTTTTATGCAATATACTAAATGCTTGGAGCCATTTTTTTTGCCTATGGTTTAGGTTTTTGTTTGGGCTCCTTTCGTGGTGTGCTTTTCTTTTCATAACATCATTTGTATTCTCTCATTTTTTCTCAATGTGAAGTTTGGTTCTTCATAAGAAGAAAGTTACTAGACTTGTTTCTGCTCTGTTTTCTACGTGTTAAAGACGAACTGCTTACACTGTAGAAGTCTGGCTGAGATGAGTGCAGGTTATATAGATTTGTAAGTTATTACTCCATAATGCTACTTAACTGTTTATTGCAATCTATGCTTGAATATGCATTAGCATTGATAGATAGACCAATGGGTTTGTAATTTATACACAATTTTTGTAATCAAAACTTGAATAAAGGGTTGTGCTTTCGGTTGGTGGCTAGTTATGAGCAATCTTGTTGTTAGATGAGGTTATTTGTTCTGGGGTTGGTTCCTCTTATGACGTTAGATGTTACACCCACTTAATTTTAGGCAATATTCATACATTCTTATATTGTGTTTGTACAAAAGTTTTTGTCTTAAATTTGAAAATGTATAAATTTTACGACAAAAACGACTTATTGGTTTTGAATTAGAATCTATTCAGTGTCTTAGTCGCAAGTTTCAAGAACACTTTTGGTCCTAGAGGTTTGAAGATCATTTTAAATGGTCATGGGCTCCTTTGACAACACTAAGATGATTTTGAGTTCAATAATATTTTCGGGTGATTAGACGTTTTCTCTACTCCTCTTCTTCCTAACATTGTGCTGCTATCTTTCAATGAATGATGGAGCTCATTGTTTCAATAAGATCCGAAATGAAGGAACCTCCAACGTTCATTTCTCTAGAACTAGAGCAAAATACTTTCTTGCTCTAGATCTGTCTGGAATTAAGGATGATCTATCTAGAACTGGAGCGAAGGTGTTCTTTCTCCTTCATTTTGCAGATCTGAGCTGACTTCGTTTCCATTCTAGATCAGCGTTCCAGTAGCAGATGGCTAGAATGTGGCCGGAGATGACAGTGACTATATTTGAGTGGAGACGAGCTGCGTGACAACCGTGTCGAGCAATGCTGGCTAAGGAGGAGCAAAGGGAGAGGAAGGTCACCTCATCAAAAAACTGGTACTAAGTTATTTAAATTTGCCATTAGCAAGTTGTACTTACTAATAGGAGGTTAGGGACAATTCTTCCGTTACCAAATTTAAACTTTCAGACCAAAGATGTAGTTTTGGCAAACTGTTAACAACGTGGTGGAGGCCTAATTTGATGCACTTATACATTGAGAGATGGATAATAAGGGGTTCAGGTTTAGAGGAAGGAGTTGGTTGTTCTTACAGATAGATTGCCATCCTGTTCTCCATTTGGGGAAAGGAGATGAAACACTGAGATTGAGAATCTGTTTTTCTGGATCATTTTTGTTCAAAATTGGCCATTGGGCTCATGTGCTTGTTCATGTCCAAAGCTGTTTTGACCTGTTTTATGGGCTAGAATTCTCATAA

mRNA sequence

ATGAGGCCCTTGGACGAGAAAGAGACCACCGCCGTGTTCGAGAAGCTCCACAAATTCACCGGTAACAACCTCAAGAACATTGTCGAGAACCCCTCTCACGAAGGGCCGGAGCTAAATCCCGGCCGCTACTGCTTCCGCCTTCATAAGAACAAGGTATATTACGTCAGTGACTCCCTTGTTAAGCGAGCTACCAACGTAGCCCGCAGCAACCTTGTCGTTCTCGGCACCTGCATCGGAAAGTTTACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCTTCCAATGCTAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTTGTTGTGTATTCTATGTCGGATGTGCCATTGGGATTTGGAATTGCGGCGAAGTCCACGCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGAATCAAGATGAAGATGAGTTGAGTTTATTGGGCATCGGCTTCCTGGTCCAGACGTTTTCTCTACTCCTCTTCTTCCTAACATTGTGCTGCTATCTTTCAATGAATGATGGAGCTCATTGTTTCAATAAGATCCGAAATGAAGGAACCTCCAACGTTCATTTCTCTAGAACTAGAGCAAAATACTTTCTTGCTCTAGATCTGTCTGGAATTAAGGATGATCTATCTAGAACTGGAGCGAAGATAGATTGCCATCCTGTTCTCCATTTGGGGAAAGGAGATGAAACACTGAGATTGAGAATCTGTTTTTCTGGATCATTTTTGTTCAAAATTGGCCATTGGGCTCATGTGCTTGTTCATGTCCAAAGCTGTTTTGACCTGTTTTATGGGCTAGAATTCTCATAA

Coding sequence (CDS)

ATGAGGCCCTTGGACGAGAAAGAGACCACCGCCGTGTTCGAGAAGCTCCACAAATTCACCGGTAACAACCTCAAGAACATTGTCGAGAACCCCTCTCACGAAGGGCCGGAGCTAAATCCCGGCCGCTACTGCTTCCGCCTTCATAAGAACAAGGTATATTACGTCAGTGACTCCCTTGTTAAGCGAGCTACCAACGTAGCCCGCAGCAACCTTGTCGTTCTCGGCACCTGCATCGGAAAGTTTACTCATGGCGGCAGTTTTCATCTCACTGTTCACTCGCTAGGGCTATTGTCTTCCAATGCTAAGCACAAGGTTTGGCTTAAACCAACTTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGCGGATTAGGGCGGATTACTGAAAATATTGCTCCCGGTGATGGGGTTGTTGTGTATTCTATGTCGGATGTGCCATTGGGATTTGGAATTGCGGCGAAGTCCACGCAGGACTGTAGGAAGTTGGACCCGAATGGGATTGTGAATCAAGATGAAGATGAGTTGAGTTTATTGGGCATCGGCTTCCTGGTCCAGACGTTTTCTCTACTCCTCTTCTTCCTAACATTGTGCTGCTATCTTTCAATGAATGATGGAGCTCATTGTTTCAATAAGATCCGAAATGAAGGAACCTCCAACGTTCATTTCTCTAGAACTAGAGCAAAATACTTTCTTGCTCTAGATCTGTCTGGAATTAAGGATGATCTATCTAGAACTGGAGCGAAGATAGATTGCCATCCTGTTCTCCATTTGGGGAAAGGAGATGAAACACTGAGATTGAGAATCTGTTTTTCTGGATCATTTTTGTTCAAAATTGGCCATTGGGCTCATGTGCTTGTTCATGTCCAAAGCTGTTTTGACCTGTTTTATGGGCTAGAATTCTCATAA

Protein sequence

MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLVKRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVNQDEDELSLLGIGFLVQTFSLLLFFLTLCCYLSMNDGAHCFNKIRNEGTSNVHFSRTRAKYFLALDLSGIKDDLSRTGAKIDCHPVLHLGKGDETLRLRICFSGSFLFKIGHWAHVLVHVQSCFDLFYGLEFS

Homology

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BLAST of CmaCh14G016250 vs. ExPASy Swiss-Prot
Match: A4QND5 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.0e-53
Identity = 103/170 (60.59%), Postives = 126/170 (74.12%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV LGTC GKFT    F L V +L  L+  AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+AAKSTQ+CRKLDP  IV
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIV 162

[Close]

BLAST of CmaCh14G016250 vs. ExPASy Swiss-Prot
Match: Q6DFH9 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 5.2e-53
Identity = 103/170 (60.59%), Postives = 125/170 (73.53%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL ++ET A+FEKL K+ G N+K +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV  GTC GKFT    F L V +L  L+  AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+AAKSTQ+CRKLDP  IV
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIV 162

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BLAST of CmaCh14G016250 vs. ExPASy Swiss-Prot
Match: Q4T2X8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.4e-52
Identity = 100/170 (58.82%), Postives = 124/170 (72.94%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH ++VYY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRPD--------GTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K ATN+AR  LV +GTC GKFT    F L + +L  L+  AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLK GLGRITEN A   GVVVYSM+DVPLGFG+AAKSTQ+CR++DP  IV
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIV 162

[Close]

BLAST of CmaCh14G016250 vs. ExPASy Swiss-Prot
Match: Q9WV50 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.8e-51
Identity = 100/170 (58.82%), Postives = 123/170 (72.35%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV LGTC GKFT    F L V +L  L+  AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLK GLGRITEN +   GVVVYSM+DVPLGFG+AAKSTQDCRK+DP  IV
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIV 162

[Close]

BLAST of CmaCh14G016250 vs. ExPASy Swiss-Prot
Match: Q9Y221 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.7e-51
Identity = 99/170 (58.24%), Postives = 123/170 (72.35%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPL E+ET  +FEK+ K+ G NL+ +V+ P         G YCFRLH ++VYYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD--------GTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           K A N++   LV LGTC GKFT    F L V +L  L+  AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLK GLGRITEN +   GVVVYSM+D+PLGFG+AAKSTQDCRK+DP  IV
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIV 162

[Close]

BLAST of CmaCh14G016250 vs. ExPASy TrEMBL
Match: A0A6J1IQ28 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111479477 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.4e-93
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. ExPASy TrEMBL
Match: A0A6J1GYK7 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458029 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.6e-92
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTVHSLGLL+SNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. ExPASy TrEMBL
Match: A0A6J1I8G6 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111472343 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 6.5e-91
Identity = 163/170 (95.88%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV LGTCIGKFTHGGSFHLTVHSLGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHSLGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSD+PLGFGIAAKSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDIPLGFGIAAKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. ExPASy TrEMBL
Match: A0A6J1G8L8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451723 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 1.1e-90
Identity = 163/170 (95.88%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR+NLV LGTCIGKFTHGGSFHLTVH+LGLLS+NA+HKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. ExPASy TrEMBL
Match: A0A6J1C974 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3673 GN=LOC111009133 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 7.9e-89
Identity = 162/170 (95.29%), Postives = 164/170 (96.47%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNL+NIVENPSHEGPE NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVAR NLV LGTCIGK THGGSFHLTV SLGLL+ NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. NCBI nr
Match: XP_022979935.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979936.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979937.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979939.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979940.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_022979941.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 352.8 bits (904), Expect = 2.9e-93
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. NCBI nr
Match: KAG6582220.1 (60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 351.3 bits (900), Expect = 8.4e-93
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. NCBI nr
Match: KAG7018619.1 (60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.7 bits (896), Expect = 2.4e-92
Identity = 168/170 (98.82%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. NCBI nr
Match: XP_022956278.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956279.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956280.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956281.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956282.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956283.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_022956284.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 5.5e-92
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTVHSLGLL+SNAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIA KSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIV 170

[Close]

BLAST of CmaCh14G016250 vs. NCBI nr
Match: XP_023528444.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528446.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528447.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528448.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528449.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528450.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.9 bits (886), Expect = 3.5e-91
Identity = 167/170 (98.24%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGP  NPGRYCFRLHKNKVYYVSDSLV
Sbjct: 25  MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPGPNPGRYCFRLHKNKVYYVSDSLV 84

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATNVARSNLV LGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH
Sbjct: 85  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 144

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV
Sbjct: 145 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 194

[Close]

BLAST of CmaCh14G016250 vs. TAIR 10
Match: AT4G15770.1 (RNA binding )

HSP 1 Score: 297.7 bits (761), Expect = 1.0e-80
Identity = 140/170 (82.35%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60
           MRPLDE ETT VFEKL KF GNNLK IVENPS EGPE  PG YCFRL KN+VYYVS++LV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120
           KRATN++R NLV  GTCIGK+TH GSFHLT+ SL +L++NAKHKVWLKPTSEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIV 171
           VLKGGLGRIT++I PGDGVVV+SMSDVPLGFGIAAKSTQDCRKLDPNGIV
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIV 170

The following BLAST results are available for this feature:

BLAST of CmaCh14G016250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QND5	3.0e-53	60.59	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83...	[more]
Q6DFH9	5.2e-53	60.59	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G...	[more]
Q4T2X8	4.4e-52	58.82	60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O...	[more]
Q9WV50	2.8e-51	58.82	60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101...	[more]
Q9Y221	3.7e-51	58.24	60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=...	[more]

BLAST of CmaCh14G016250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQ28	1.4e-93	100.00	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1GYK7	2.6e-92	98.24	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1I8G6	6.5e-91	95.88	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1G8L8	1.1e-90	95.88	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1C974	7.9e-89	95.29	60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3...	[more]

BLAST of CmaCh14G016250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979935.1	2.9e-93	100.00	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima] >XP_0229...	[more]
KAG6582220.1	8.4e-93	99.41	60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita ar...	[more]
KAG7018619.1	2.4e-92	98.82	60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita ar...	[more]
XP_022956278.1	5.5e-92	98.24	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_02...	[more]
XP_023528444.1	3.5e-91	98.24	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo...	[more]

BLAST of CmaCh14G016250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15770.1	1.0e-80	82.35	RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 103..178 e-value: 1.0E-14 score: 64.9
None	No IPR available	GENE3D	3.10.450.220		coord: 1..101 e-value: 4.3E-36 score: 124.8
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..170
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..170
None	No IPR available	PROSITE	PS50890	PUA	coord: 102..183 score: 13.552995
None	No IPR available	SUPERFAMILY	88802	Pre-PUA domain	coord: 1..101
IPR005155	UPF0113, PUA domain	PFAM	PF03657	UPF0113	coord: 104..162 e-value: 1.5E-14 score: 54.0
IPR040598	UPF0113, pre-PUA domain	PFAM	PF17833	UPF0113_N	coord: 2..90 e-value: 2.3E-23 score: 82.5
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 102..177 e-value: 2.8E-30 score: 106.0
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 103..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G016250.1	CmaCh14G016250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0003723	RNA binding