CmaCh14G015090 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G015090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 11421948 .. 11424515 (-)
RNA-Seq ExpressionCmaCh14G015090
SyntenyCmaCh14G015090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATTTTGGTTGGGTTGTACCAAATTTTGCAACATCAGCGTAGAGTCCTATTGTTGTAGTTTTGCTTGTAGTTCCAAAATATAAATGGAAAATGGTCTTGCTTTTCTTGAACTCAGCTATGTGAAATATTAGATGGAAGCTGTTCTATACATTCTTTAATCTTCCATTTTTCAGGATTGTGGACTATTACATCATTCATATAATTGTCTTAGTGCTGGAAATAGATGTCTGTCGATCCAATAAATAATCTACTCTTATCAGAAGTATTTGAAAAGTTCACTTTTTAGTCCATTAGTTATGAACATTAAGTGTGTTAGTCCTTGGTGATTCACCACCAATAGGAACTATTAGAAACAAACAGAAAGCTGACTGGACTTTTAACTGCTTATGTGGCTTGCTGAGAGAGAAAAAAAATTGTCCAAGTGAACTTTCTTTCTCACTTGCTCCTTCAACCACATGAGGTGTCCATCCAATTGACTTTCACGAGCAAAGGCATGTGACGAAAAGGACCCAACCCACACTGTGATGACCCCTGCTTCACTTGCGATGATACATTTCCAATTGTTGTTTGTGACCTTGGGGGATCGAGCGGACAACTTGCTGCACATGATTTCAGGCAAGTTTCGACACATGCACACCAAAAAAATGTTGGTTGTTTGTTCAAACACCATCGTTAGAATATATTGTCATAGATGGAAGAAGTAGCAGTGTTGTGCAGCATCAGGGGTGGAACAAGTAGTGCTGTTGTGCAGCAATAGGGGTCCATACCCGCTGTTGTGCAGCGTTAGGGGTGCCATGGTATGGACGATTTCATTTGGGACGTGACCTTCCTTATTGAAGAAGCAGATTGAGGTTGATTGGGATTGAGTTTTTGGTGGCTCATGTGTGAAACGGAGGGGAAAGGACATCTTTTTCCCACTTGGCAAGCCACGTAAATATCTAGGTTGACAACATAATGGAATGGTGTTAGAGGTCCTTCGGTCAAATATATTCTTGTGATGCACGTGTCGATCGTTGGTTCTGTTAAAATCGTCTAGGTTTGTGTTTTTTGTGACTAGTGCTTACGATTCGTTGTGTCCTAAGACCCAACATCACCTAACAATCCCTTATGATGTGGCTAGCTGTTTGGGATATGTTGTCTCTATTGTTGGAATAGCCTAGTCCCGAAGTTTGTAGGCTTATTGCGATCACTTGTATTTTGAATGCCTCTGTAGTAGGCCTATCTAGGGGCACATTCTCGCTTGGCATCTTTCCATCAATTTTCTTTTGAGACCGTAAATTTGGTTCCACATGTCTCACCTAAATGTTGGGTGACAAATGGCTGTATTATTTGGTACGGAATAGTTATGACTAAGAGTGTAACCTTTGAGTTTATGACTTGTCTGTGGCCTCCTTAAATTGTTCTTTAGGCCACATGGTTTGAGGATCTTTTGATGCGGGTTTTCGGGTCCCTTTAGGATCTGATCTTATGAGGTCGGGTCATTATTTCTTTACTTGGGGCTTACTTGCATTGCTAGTTCTTGTCGTATATGACGGTTATTTGGTATTTTTATGTTTTTTTAGCGATCACAATTGACATGTGCACAAATATATATATTTATGTCTTGATGTGGTGATTATTCCTTCACTAAGAGTAAGTAAACCTTTCCTCGGCTGCTACGGTGAAAGTTCTTGTTCCTAATGTCCTGATGTGATTGACTATTCCTTCAAGATAGTTCTACCCATAAGAAGTGTGGAATTTTTGGTGTGTGTGCGACACATAGTGAGTGAGACAAAAGAGCGTTAAAAATGCAAAGAAAGAAGCTCATGCTTCAATCTATTAGATTTGCCCTCTGCTGCATATACCTCATTATCAAAACTAGATGAAACGAATACAATGTGATTGGATGGCAATGCTCTGAAAGCTAAACATGGTTTGAAGCCAATAACGTCATGATTCATTGAGGTTGATTCTAAAGTTACGGTTTTTAGTTCATTTCTTGGCTCGTAATGGTTGGAATGATTGCGAGAAACTCCTCCAAACTTCTCACAGACGAACCCTTTTCGTTATAATCCTTATAATCCTTGACCGCGGCCTCATCTTGTCCGTAACAATGGCGGCCTTCTTCCTCATCTCTTCCCCTTTCCCACCTTCCCCCATCACCGTTTCTATCATCTCCTTCACCTTCCCTCTCTGAATCTCTCTCTCTCTTCCCCTTGTCAGCTCCACTCCAACCCCCATCTCCTCCACCATCATCTTCGAGTTGTACGCCTGTTCTGCCGCCATTGGCCACCCTATCATCGGCACCCCCTGGCTCAGGCTCTCCACCATTGAATTCCATCCACAGTGGCTCAAAAACGCCCCCACCGCTTCATGCGACAAAATATCCAACTGGGGTGCCCAATTTCTGATCAACAATCCTCCATTCCTCTCCATTTGTTCCTCGAATCGCTCCGGCAGCCATTCATCAGCTCTGAACTCTGCTTTCATGTCGTGCCCCAATGGCGGCCTCACCATCCATATGAACGCCTTCCCACTTTCCTCCAATCCGTGCGCCAATTCTAGCATCTGGGTCTCTCGCTGA

mRNA sequence

ATGGCCATTTTGGTTGGCTCCACTCCAACCCCCATCTCCTCCACCATCATCTTCGAGTTGTACGCCTGTTCTGCCGCCATTGGCCACCCTATCATCGGCACCCCCTGGCTCAGGCTCTCCACCATTGAATTCCATCCACAGTGGCTCAAAAACGCCCCCACCGCTTCATGCGACAAAATATCCAACTGGGGTGCCCAATTTCTGATCAACAATCCTCCATTCCTCTCCATTTGTTCCTCGAATCGCTCCGGCAGCCATTCATCAGCTCTGAACTCTGCTTTCATGTCGTGCCCCAATGGCGGCCTCACCATCCATATGAACGCCTTCCCACTTTCCTCCAATCCGTGCGCCAATTCTAGCATCTGGGTCTCTCGCTGA

Coding sequence (CDS)

ATGGCCATTTTGGTTGGCTCCACTCCAACCCCCATCTCCTCCACCATCATCTTCGAGTTGTACGCCTGTTCTGCCGCCATTGGCCACCCTATCATCGGCACCCCCTGGCTCAGGCTCTCCACCATTGAATTCCATCCACAGTGGCTCAAAAACGCCCCCACCGCTTCATGCGACAAAATATCCAACTGGGGTGCCCAATTTCTGATCAACAATCCTCCATTCCTCTCCATTTGTTCCTCGAATCGCTCCGGCAGCCATTCATCAGCTCTGAACTCTGCTTTCATGTCGTGCCCCAATGGCGGCCTCACCATCCATATGAACGCCTTCCCACTTTCCTCCAATCCGTGCGCCAATTCTAGCATCTGGGTCTCTCGCTGA

Protein sequence

MAILVGSTPTPISSTIIFELYACSAAIGHPIIGTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNPPFLSICSSNRSGSHSSALNSAFMSCPNGGLTIHMNAFPLSSNPCANSSIWVSR
Homology
BLAST of CmaCh14G015090 vs. ExPASy TrEMBL
Match: A0A7J6FQE2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_001510 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.0e-21
Identity = 57/95 (60.00%), Postives = 66/95 (69.47%), Query Frame = 0

Query: 31  IIGTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNPPFLSIC-SSNRSGSHSSA 90
           +IGTPWL+LS  EFHPQWL+NAP   C K+SNWGA F  NNP F S+  SSN SG+H S 
Sbjct: 1   MIGTPWLKLSITEFHPQWLRNAPVDLCPKMSNWGAHFRTNNPRFFSLARSSNPSGNH-SG 60

Query: 91  LNSAFMSCPNGGLTIHMNAFPLSSNPCANSSIWVS 125
           LNS F S P+GGL      F L S+P ANS IWV+
Sbjct: 61  LNSPFKSKPSGGLMTQTKGFSLFSSPIANSIIWVA 94

BLAST of CmaCh14G015090 vs. ExPASy TrEMBL
Match: A0A7I8KPU1 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_07009635 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 9.1e-15
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 33  GTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNP-PFLSICSSNRSGSHSSALN 92
           GTP LRLS+ EFHPQW +N PT   D+IS+ GAQF    P P L + SSN SGSHSS LN
Sbjct: 3   GTPLLRLSSTEFHPQWDRNPPTDGWDRISSCGAQFRTRRPRPLLPVRSSNPSGSHSS-LN 62

Query: 93  SAFMSCPNGGLTIHMNAFPLSSNPCANSSI 122
           S FMS P GG T  MN   ++S P A + I
Sbjct: 63  SPFMSKPKGGRTTQMNGRRVASRPAARAII 91

BLAST of CmaCh14G015090 vs. ExPASy TrEMBL
Match: A0A0A9L3D0 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 0

Query: 32  IGTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNPPFLS-ICSSNRSGSHSSAL 91
           +GTP ++LS+ EFHPQWL+NAP  +C +I   GA      P  L+   SSN +GSH SA 
Sbjct: 1   MGTPRVKLSSTEFHPQWLRNAPVDACARILTCGAHPRTRRPRLLARTRSSNPAGSHRSAR 60

Query: 92  NSAFMSCPNGGLTIHMNAFPLSSNPCANSSIWVSR 126
           NS  MSCP+GGLT   N  P+ S   A+S++  +R
Sbjct: 61  NSPLMSCPSGGLTAQTNGRPVDSRAAASSAMCSAR 95

BLAST of CmaCh14G015090 vs. ExPASy TrEMBL
Match: A0A7I8KMF2 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_07008948 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.2e-12
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 33  GTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNP-PFLSICSSNRSGSHSSALN 92
           GTP LRLS+ EFHPQW +N PT   D+IS+ G QF    P P   + SSN  GSHSS LN
Sbjct: 3   GTPLLRLSSTEFHPQWDRNPPTDGWDRISSCGDQFRTRRPRPLFPVRSSNPFGSHSS-LN 62

Query: 93  SAFMSCPNGGLTIHMNAFPLSSNPCANSSI 122
           SAF S P GG    MN   ++S P A++ I
Sbjct: 63  SAFTSKPKGGRMTQMNGRRVASRPAASAII 91

BLAST of CmaCh14G015090 vs. ExPASy TrEMBL
Match: A0A7N0UN73 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-11
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0

Query: 31  IIGTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNP-PFLSICSSNRSGSHSSA 90
           ++GTP ++LS+ EF PQWL+NAP    D +S WGA     +P  F     SN SGSH S 
Sbjct: 1   MMGTPCVKLSSTEFQPQWLRNAPVDLWDSMSCWGAHVFTTSPCLFCLTLFSNPSGSH-SP 60

Query: 91  LNSAFMSCPNGGLTIHMNAFPLSSNPCANSSI 122
           LN++    P GGL   MNAFPL+S+P A+S I
Sbjct: 61  LNASVTLNPIGGLITQMNAFPLASSPFASSII 91

BLAST of CmaCh14G015090 vs. NCBI nr
Match: KAF4372010.1 (hypothetical protein G4B88_001510 [Cannabis sativa])

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-21
Identity = 57/95 (60.00%), Postives = 66/95 (69.47%), Query Frame = 0

Query: 31  IIGTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNPPFLSIC-SSNRSGSHSSA 90
           +IGTPWL+LS  EFHPQWL+NAP   C K+SNWGA F  NNP F S+  SSN SG+H S 
Sbjct: 1   MIGTPWLKLSITEFHPQWLRNAPVDLCPKMSNWGAHFRTNNPRFFSLARSSNPSGNH-SG 60

Query: 91  LNSAFMSCPNGGLTIHMNAFPLSSNPCANSSIWVS 125
           LNS F S P+GGL      F L S+P ANS IWV+
Sbjct: 61  LNSPFKSKPSGGLMTQTKGFSLFSSPIANSIIWVA 94

BLAST of CmaCh14G015090 vs. NCBI nr
Match: CAA7398965.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 33  GTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNP-PFLSICSSNRSGSHSSALN 92
           GTP LRLS+ EFHPQW +N PT   D+IS+ GAQF    P P L + SSN SGSHSS LN
Sbjct: 3   GTPLLRLSSTEFHPQWDRNPPTDGWDRISSCGAQFRTRRPRPLLPVRSSNPSGSHSS-LN 62

Query: 93  SAFMSCPNGGLTIHMNAFPLSSNPCANSSI 122
           S FMS P GG T  MN   ++S P A + I
Sbjct: 63  SPFMSKPKGGRTTQMNGRRVASRPAARAII 91

BLAST of CmaCh14G015090 vs. NCBI nr
Match: CAB3485059.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 58/122 (47.54%), Postives = 68/122 (55.74%), Query Frame = 0

Query: 1   MAILVGSTPTPISSTIIFELYACSAAIGHPIIGTPWLRLSTIEFHPQWLKNAPTASCDKI 60
           M  L  ST TP  ST  F L  CSA  GHPI GTPW RLS +EFHPQWL+NAP    D  
Sbjct: 58  MLPLATSTQTP-HSTTSFALKNCSAPSGHPISGTPWERLSRMEFHPQWLRNAPV---DGT 117

Query: 61  SNWGAQFLINNPPFLSIC-SSNRSGSHSSALNSAFMSCPNGGLTIHMNAFPLSSNPCANS 120
              GA    ++P       SS  SGSH S LN +  S P+GG +      PL+S+P A+S
Sbjct: 118 RTCGAHPRTSSPDLARAARSSKPSGSH-SGLNPSLGSNPSGGRSAQRKGRPLASSPSASS 174

Query: 121 SI 122
            I
Sbjct: 178 FI 174

BLAST of CmaCh14G015090 vs. NCBI nr
Match: CAA2622995.1 (unnamed protein product [Spirodela intermedia] >CAA7398967.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-12
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 33  GTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFLINNP-PFLSICSSNRSGSHSSALN 92
           GTP LRLS+ EFHPQW +N PT   D+IS+ G QF    P P   + SSN  GSHSS LN
Sbjct: 3   GTPLLRLSSTEFHPQWDRNPPTDGWDRISSCGDQFRTRRPRPLFPVRSSNPFGSHSS-LN 62

Query: 93  SAFMSCPNGGLTIHMNAFPLSSNPCANSSI 122
           SAF S P GG    MN   ++S P A++ I
Sbjct: 63  SAFTSKPKGGRMTQMNGRRVASRPAASAII 91

BLAST of CmaCh14G015090 vs. NCBI nr
Match: PON57033.1 (hypothetical protein TorRG33x02_294610 [Trema orientale])

HSP 1 Score: 77.8 bits (190), Expect = 7.4e-11
Identity = 50/113 (44.25%), Postives = 57/113 (50.44%), Query Frame = 0

Query: 9   PTPISSTIIFELYACSAAIGHPIIGTPWLRLSTIEFHPQWLKNAPTASCDKISNWGAQFL 68
           PTP +          S  IGH  IGTP + LST EFHPQWLKN P   C KISNWGA  L
Sbjct: 47  PTPSNFVTSIAFLGWSVCIGHAPIGTPIVMLSTHEFHPQWLKNPPVDGCPKISNWGAHSL 106

Query: 69  INNPPFLSICSSNRSGSHSSALNSAFMSCP-NGGLTIHMNAFPLSSNPCANSS 121
               P LS   S   GS +    S   + P +  L+  MN   L SNP A+ S
Sbjct: 107 -TTIPILSTLFSYPFGSSNFLTCSPSKTSPLSASLSTQMNFISLCSNPKASCS 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6FQE21.0e-2160.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_001510 PE=4 SV=1[more]
A0A7I8KPU19.1e-1556.67Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_07009635 PE=4 SV... [more]
A0A0A9L3D01.7e-1347.37Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7I8KMF23.2e-1252.22Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_07008948 PE=4 SV... [more]
A0A7N0UN732.1e-1148.91Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAF4372010.12.1e-2160.00hypothetical protein G4B88_001510 [Cannabis sativa][more]
CAA7398965.11.9e-1456.67unnamed protein product [Spirodela intermedia][more]
CAB3485059.12.1e-1347.54unnamed protein product [Digitaria exilis][more]
CAA2622995.16.7e-1252.22unnamed protein product [Spirodela intermedia] >CAA7398967.1 unnamed protein pro... [more]
PON57033.17.4e-1144.25hypothetical protein TorRG33x02_294610 [Trema orientale][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G015090.1CmaCh14G015090.1mRNA