CmaCh14G013460 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G013460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionAt1g52565
LocationCma_Chr14: 10473666 .. 10474351 (+)
RNA-Seq ExpressionCmaCh14G013460
SyntenyCmaCh14G013460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTAGACAAGTGTAGAGGGCCACGCATGCAATTAAAATCTCCATCTTCATCTCCCCCACTTGCCAACTAAATTCCACCATCCATTTTCAAAACAATACCCAAAATAAACACCTTCCGCCACCCATGTCTTCCATTCTCACCTCTCAAGGTCTCGTCATTGCCACCGCCATGGTCGTCTCCTCCACCGCTCTCTTCCTCGCCTTCTCCAAGCACCACAAGATCAATCCCCTCCCTTCCAAAGCCCTTCTTTCTTCCTGCTTTTCCTCTGGTAAATCCCCTTTTCTTTTCTTCAATCATGTTTTGAACATAAGAAGCTGAATCTTGGTGGGTTTTTGATGTTGAATTAACTTAAAACTTGATGGGTTTTTGTGAAGTTTGTGTTTTTAGTGTTGTTTTGAAGATTTGGGGCTGAAATTTTGGTGGGTTTTTGATGTTTTTGTGTTTAGACAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGAGATTTGCAGAGGATGTGAAGGAGCCAAAAGGGAATGGAGAAGAGTACAGAAGAGAGCACGATGAGAGAGTGGGTATGGCGGAAAGAAGAAGAACAACAACAAGTAGCAGCTGCTGTCGAAATGAAATTCCTGCAAATCGTGTTGCTTTGTATAATGGAATGCTCAAACAACGATCGCTAAGAACCCAATGTTCATTTTGA

mRNA sequence

TTCTAGACAAGTGTAGAGGGCCACGCATGCAATTAAAATCTCCATCTTCATCTCCCCCACTTGCCAACTAAATTCCACCATCCATTTTCAAAACAATACCCAAAATAAACACCTTCCGCCACCCATGTCTTCCATTCTCACCTCTCAAGGTCTCGTCATTGCCACCGCCATGGTCGTCTCCTCCACCGCTCTCTTCCTCGCCTTCTCCAAGCACCACAAGATCAATCCCCTCCCTTCCAAAGCCCTTCTTTCTTCCTGCTTTTCCTCTGACAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGAGATTTGCAGAGGATGTGAAGGAGCCAAAAGGGAATGGAGAAGAGTACAGAAGAGAGCACGATGAGAGAGTGGGTATGGCGGAAAGAAGAAGAACAACAACAAGTAGCAGCTGCTGTCGAAATGAAATTCCTGCAAATCGTGTTGCTTTGTATAATGGAATGCTCAAACAACGATCGCTAAGAACCCAATGTTCATTTTGA

Coding sequence (CDS)

ATGTCTTCCATTCTCACCTCTCAAGGTCTCGTCATTGCCACCGCCATGGTCGTCTCCTCCACCGCTCTCTTCCTCGCCTTCTCCAAGCACCACAAGATCAATCCCCTCCCTTCCAAAGCCCTTCTTTCTTCCTGCTTTTCCTCTGACAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGAGATTTGCAGAGGATGTGAAGGAGCCAAAAGGGAATGGAGAAGAGTACAGAAGAGAGCACGATGAGAGAGTGGGTATGGCGGAAAGAAGAAGAACAACAACAAGTAGCAGCTGCTGTCGAAATGAAATTCCTGCAAATCGTGTTGCTTTGTATAATGGAATGCTCAAACAACGATCGCTAAGAACCCAATGTTCATTTTGA

Protein sequence

MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKKVRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQRSLRTQCSF
Homology
BLAST of CmaCh14G013460 vs. ExPASy TrEMBL
Match: A0A6J1IWF1 (uncharacterized protein LOC111479184 OS=Cucurbita maxima OX=3661 GN=LOC111479184 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.1e-59
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKK 60
           MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKK
Sbjct: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKK 60

Query: 61  VRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQRS 120
           VRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQRS
Sbjct: 61  VRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQRS 120

Query: 121 LRTQCSF 128
           LRTQCSF
Sbjct: 121 LRTQCSF 127

BLAST of CmaCh14G013460 vs. ExPASy TrEMBL
Match: A0A6J1GVB7 (uncharacterized protein LOC111457756 OS=Cucurbita moschata OX=3662 GN=LOC111457756 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.3e-52
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDK--RKKKKKKK 60
           MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSK+LLSSCFSSD+  +KKKKKKK
Sbjct: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKSLLSSCFSSDEKNKKKKKKKK 60

Query: 61  KKVRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQ 120
           KKVRFAEDVKEPKGNGEEYRREHDERV MAERR   TSSSCCRNEIPANRVALYNG+LKQ
Sbjct: 61  KKVRFAEDVKEPKGNGEEYRREHDERVAMAERR---TSSSCCRNEIPANRVALYNGILKQ 120

Query: 121 RSLRTQCSF 128
           RSLRTQCSF
Sbjct: 121 RSLRTQCSF 126

BLAST of CmaCh14G013460 vs. ExPASy TrEMBL
Match: A0A6J1K8H4 (uncharacterized protein LOC111493207 OS=Cucurbita maxima OX=3661 GN=LOC111493207 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 99/133 (74.44%), Postives = 112/133 (84.21%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRK------KK 60
           MSSIL+SQGLVIATAMVVSSTALFLAFSKHHKI P  SK+LL SC SSD +K      K 
Sbjct: 1   MSSILSSQGLVIATAMVVSSTALFLAFSKHHKITPTSSKSLLRSCLSSDDKKREKNQNKN 60

Query: 61  KKKKKKVRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNG 120
           KKK KKVRFAEDVKEP+GNGEEYR+EHDE+V MAERRR TT++  C+N+ PAN++ALYNG
Sbjct: 61  KKKGKKVRFAEDVKEPRGNGEEYRKEHDEKVAMAERRRRTTTTRSCKNQTPANQLALYNG 120

Query: 121 MLKQRSLRTQCSF 128
           +LKQRS R QCSF
Sbjct: 121 ILKQRSQRIQCSF 133

BLAST of CmaCh14G013460 vs. ExPASy TrEMBL
Match: A0A6J1GAK8 (uncharacterized protein LOC111452283 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452283 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.4e-41
Identity = 100/135 (74.07%), Postives = 114/135 (84.44%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRK------KK 60
           MSSIL+SQGLVIATAMVVSSTALFLAFSKHHKI P PSK+LL SC SSD +K      K 
Sbjct: 1   MSSILSSQGLVIATAMVVSSTALFLAFSKHHKITPTPSKSLLRSCLSSDDKKREKNKNKN 60

Query: 61  KKKKKKVRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSS--CCRNEIPANRVALY 120
           KKK KKVRFAEDVKEP+GNGEEYR+EHDE++ MAERRR TTS++   C+N+ PAN++ALY
Sbjct: 61  KKKGKKVRFAEDVKEPRGNGEEYRKEHDEKMAMAERRRRTTSTTTRSCKNQTPANQLALY 120

Query: 121 NGMLKQRSLRTQCSF 128
           NG+LKQRS R QCSF
Sbjct: 121 NGILKQRSQRIQCSF 135

BLAST of CmaCh14G013460 vs. ExPASy TrEMBL
Match: A0A1S3BY99 (uncharacterized protein LOC103494703 OS=Cucumis melo OX=3656 GN=LOC103494703 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.7e-37
Identity = 98/131 (74.81%), Postives = 110/131 (83.97%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHH--KINPL--PSKALLSSCFSSDKRKKKKK 60
           MSSIL+SQGLVIATAMVVSSTALFLAFS HH   I+P+  PS +LL SCFSSD+ KKK+K
Sbjct: 1   MSSILSSQGLVIATAMVVSSTALFLAFSNHHHKMISPIIPPSTSLLPSCFSSDE-KKKQK 60

Query: 61  KKKKVRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGML 120
           KKKKVRFAEDVKEPKGNGEEYRREHDE++G+ E  R     S CRN+IPANR+ALYNG+L
Sbjct: 61  KKKKVRFAEDVKEPKGNGEEYRREHDEKIGLMEETRRGRRIS-CRNDIPANRIALYNGIL 120

Query: 121 KQRSLRTQCSF 128
           K RS R QCSF
Sbjct: 121 KDRSQRIQCSF 129

BLAST of CmaCh14G013460 vs. NCBI nr
Match: XP_022979503.1 (uncharacterized protein LOC111479184 [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKK 60
           MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKK
Sbjct: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKK 60

Query: 61  VRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQRS 120
           VRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQRS
Sbjct: 61  VRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQRS 120

Query: 121 LRTQCSF 128
           LRTQCSF
Sbjct: 121 LRTQCSF 127

BLAST of CmaCh14G013460 vs. NCBI nr
Match: XP_023528178.1 (uncharacterized protein LOC111791169 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 9.4e-54
Identity = 120/128 (93.75%), Postives = 124/128 (96.88%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKK 60
           MSSILTSQGLVIATAMVVSSTALFLAFS HHKINPLPSK+LLSSCFSSDK+KKKKKKKKK
Sbjct: 1   MSSILTSQGLVIATAMVVSSTALFLAFSNHHKINPLPSKSLLSSCFSSDKKKKKKKKKKK 60

Query: 61  VRFAEDVKEPKGNGEEYRREHDERVGMAE-RRRTTTSSSCCRNEIPANRVALYNGMLKQR 120
           VRFAEDVKEPKGNGEEYRREHDER+ MAE RRRT TSSSCCRNEIPANRVALYNG+LKQR
Sbjct: 61  VRFAEDVKEPKGNGEEYRREHDERLAMAERRRRTRTSSSCCRNEIPANRVALYNGILKQR 120

Query: 121 SLRTQCSF 128
           SLRTQCSF
Sbjct: 121 SLRTQCSF 128

BLAST of CmaCh14G013460 vs. NCBI nr
Match: XP_022955913.1 (uncharacterized protein LOC111457756 [Cucurbita moschata])

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDK--RKKKKKKK 60
           MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSK+LLSSCFSSD+  +KKKKKKK
Sbjct: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKSLLSSCFSSDEKNKKKKKKKK 60

Query: 61  KKVRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQ 120
           KKVRFAEDVKEPKGNGEEYRREHDERV MAERR   TSSSCCRNEIPANRVALYNG+LKQ
Sbjct: 61  KKVRFAEDVKEPKGNGEEYRREHDERVAMAERR---TSSSCCRNEIPANRVALYNGILKQ 120

Query: 121 RSLRTQCSF 128
           RSLRTQCSF
Sbjct: 121 RSLRTQCSF 126

BLAST of CmaCh14G013460 vs. NCBI nr
Match: KAG7018354.1 (hypothetical protein SDJN02_20222 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.9 bits (520), Expect = 4.1e-49
Identity = 114/127 (89.76%), Postives = 120/127 (94.49%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKKKKKK 60
           MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSK+LLSSCFSS+   +++KKKKK
Sbjct: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINPLPSKSLLSSCFSSE---EEEKKKKK 60

Query: 61  VRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQRS 120
           VRFAEDVKEPKGNGEEYRREHDERV MAERR   TSSSCCRNEIPANRVALYNG+LKQRS
Sbjct: 61  VRFAEDVKEPKGNGEEYRREHDERVAMAERR---TSSSCCRNEIPANRVALYNGILKQRS 120

Query: 121 LRTQCSF 128
           LRTQCSF
Sbjct: 121 LRTQCSF 121

BLAST of CmaCh14G013460 vs. NCBI nr
Match: XP_038901306.1 (uncharacterized protein LOC120088227 [Benincasa hispida])

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-43
Identity = 105/132 (79.55%), Postives = 116/132 (87.88%), Query Frame = 0

Query: 1   MSSILTSQGLVIATAMVVSSTALFLAFSKHHKINP-LPSKALLSSCFSSDKRKKKKK--- 60
           MSSIL+SQGLVIATAMVVSSTALFLAFS HHKINP +PS +LL SCFSSD++KK+KK   
Sbjct: 1   MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKKEKKKQR 60

Query: 61  -KKKKVRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGM 120
            KKKKVRFAEDVKEPKGNGEEYRREHDE++GM ER+ T T +S CRNEIPANRVALYNG+
Sbjct: 61  RKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMEERKLTRTRTSNCRNEIPANRVALYNGI 120

Query: 121 LKQRSLRTQCSF 128
           LK RS R QCSF
Sbjct: 121 LKDRSQRIQCSF 132

BLAST of CmaCh14G013460 vs. TAIR 10
Match: AT1G52565.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-26
Identity = 69/129 (53.49%), Postives = 94/129 (72.87%), Query Frame = 0

Query: 1   MSSILT-SQGLVIATAMVVSSTALFLAFSKHHKINPLPSKALLSSCFSSDKRKKKKK-KK 60
           M+ IL+ S G+VIATAMV SSTALFLA S+    N    + +L SC SS+++KK++K KK
Sbjct: 1   MTCILSCSHGVVIATAMVFSSTALFLAISRQFSGNQTSDQQILRSCLSSEEKKKQRKNKK 60

Query: 61  KKVRFAEDVKEPKGNGEEYRREHDERVGMAERRRTTTSSSCCRNEIPANRVALYNGMLKQ 120
           KKV+FAE+VKE KGNGEEYR++   R+   +  +   + S CRN++PANR+ALYNG+L+ 
Sbjct: 61  KKVKFAENVKETKGNGEEYRKKSLRRIVPEQMIKPEKTGSVCRNDMPANRIALYNGILRD 120

Query: 121 RSLRTQCSF 128
           R  R QCS+
Sbjct: 121 RDHRIQCSY 129

BLAST of CmaCh14G013460 vs. TAIR 10
Match: AT3G15760.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 5.2e-18
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 0

Query: 10  LVIATAMVVSSTALFLAFSKHHKINPLPSKAL-------LSSCFSSDKRKKKKKKKKKVR 69
           +VIATAMV SSTALFLA ++    N    K L       L SC SS++ KK+ KK KKVR
Sbjct: 9   VVIATAMVCSSTALFLAMARQFHGNHQNPKVLDQTLRPILRSCLSSEETKKQGKKIKKVR 68

Query: 70  FAEDVKEPKGNGEEYRREHDERVGMAE--RRRTTTSSSCCRNEIPANRVALYNGMLKQRS 128
           FA++VK+ KGNGEEYRR    R  + +   +   T S C  + +PANR+ALYNG+L+ R 
Sbjct: 69  FADNVKDTKGNGEEYRRRELNRKSVPKPVTKPGKTGSMCRISTMPANRMALYNGILRDRD 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IWF16.1e-59100.00uncharacterized protein LOC111479184 OS=Cucurbita maxima OX=3661 GN=LOC111479184... [more]
A0A6J1GVB77.3e-5292.25uncharacterized protein LOC111457756 OS=Cucurbita moschata OX=3662 GN=LOC1114577... [more]
A0A6J1K8H42.0e-4174.44uncharacterized protein LOC111493207 OS=Cucurbita maxima OX=3661 GN=LOC111493207... [more]
A0A6J1GAK84.4e-4174.07uncharacterized protein LOC111452283 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3BY991.7e-3774.81uncharacterized protein LOC103494703 OS=Cucumis melo OX=3656 GN=LOC103494703 PE=... [more]
Match NameE-valueIdentityDescription
XP_022979503.11.3e-58100.00uncharacterized protein LOC111479184 [Cucurbita maxima][more]
XP_023528178.19.4e-5493.75uncharacterized protein LOC111791169 [Cucurbita pepo subsp. pepo][more]
XP_022955913.11.5e-5192.25uncharacterized protein LOC111457756 [Cucurbita moschata][more]
KAG7018354.14.1e-4989.76hypothetical protein SDJN02_20222 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038901306.13.3e-4379.55uncharacterized protein LOC120088227 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT1G52565.15.2e-2653.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G15760.15.2e-1848.82unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..90
NoneNo IPR availablePANTHERPTHR33564:SF21BNAA03G00170D PROTEINcoord: 5..127
NoneNo IPR availablePANTHERPTHR33564TRANSMEMBRANE PROTEINcoord: 5..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G013460.1CmaCh14G013460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane