CmaCh14G013430 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G013430
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr14: 10466915 .. 10467426 (-)
RNA-Seq ExpressionCmaCh14G013430
SyntenyCmaCh14G013430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCATGTCGGTGCACTTTCCCTTTCGATGAGCAATCACTAATGTCCATGGACACTAGGGGAGGTTCACTCTCTCTGCTGTGTTGGTTGGGCGAGGTTTCTTCAGGTGAGGCTGTATTTGAGTATTCGAACAATGAACTTGATTCCACCTCTTATTCTTCCCTGATCAAGTTATGTTATTGGCAGAAGTTCATGAGCTAATATTTGATGCAAAACTCAGGCGAAAACTTTTAGTTAGCGTGCATCTCGACTGGTGGTTAGGTGATCTCTCGAGTGTTGACTTAAATGGAGATGAAGAACATGCAGGAGCAGTGGCTGTCTGTGCTTCAACTTGAATGCTTGTTAGATCCTTTGTTTTTCTTTCAAATGAGATCTTTTATTGGGCATCTGTGTTTCTCTGCCATGAATTCTGTTCTTGTCTCAGCATTTTCCTGTGTATTTTCCTGTCATTAGGTAAGGGGAAATGGAGACTACAGCAGGAGTGTGCCATATTTTGGGTAACCGTCTGA

mRNA sequence

ATGGTAGCATGTCGGTGCACTTTCCCTTTCGATGAGCAATCACTAATGTCCATGGACACTAGGGGAGGTTCACTCTCTCTGCTGTGTTGGTTGGGCGAGGTTTCTTCAGAAGTTCATGAGCTAATATTTGATGCAAAACTCAGGCGAAAACTTTTAGTTAGCGTGCATCTCGACTGGTGATCCTTTGTTTTTCTTTCAAATGAGATCTTTTATTGGGCATCTGTGTTTCTCTGCCATGAATTCTGTTCTTGTCTCAGCATTTTCCTGTGTATTTTCCTGTCATTAGGTAAGGGGAAATGGAGACTACAGCAGGAGTGTGCCATATTTTGGGTAACCGTCTGA

Coding sequence (CDS)

ATGGTAGCATGTCGGTGCACTTTCCCTTTCGATGAGCAATCACTAATGTCCATGGACACTAGGGGAGGTTCACTCTCTCTGCTGTGTTGGTTGGGCGAGGTTTCTTCAGAAGTTCATGAGCTAATATTTGATGCAAAACTCAGGCGAAAACTTTTAGTTAGCGTGCATCTCGACTGGTGA

Protein sequence

MVACRCTFPFDEQSLMSMDTRGGSLSLLCWLGEVSSEVHELIFDAKLRRKLLVSVHLDW
Homology
[Close]
BLAST of CmaCh14G013430 vs. NCBI nr
Match: KAG7018352.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1   MVACRCTFPFDEQSLMSMDTRGGSLSLLCWLGEVSSEVHELIFDAKL-RRKLLVSVHLDW 60
           MVACRCTFPFDE SLMSMDTRGGS SL+CWL EVSSEVHELIFDAKL RRKLLVSVHLDW
Sbjct: 407 MVACRCTFPFDELSLMSMDTRGGSFSLMCWLHEVSSEVHELIFDAKLRRRKLLVSVHLDW 466

The following BLAST results are available for this feature:
BLAST of CmaCh14G013430 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G013430 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh14G013430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018352.14.4e-2291.67Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
BLAST of CmaCh14G013430 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G013430.1CmaCh14G013430.1mRNA